Rw3G000990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0002273
Physical Location & Seq
Reverse (-)
801791 .. 804944
3154 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G000990.1

Sequence Viewer

Length: 948 bp
ATGACGACGACGAGCAGTGAGAAGAAGAAGAAGACTCGGGAGTTGCCGAACCTGACGGAGTGCCATTGCTGCCACCTCAGGGTCGACCTCGCCAAATCCTCCCAGAACAACAAGCTTCAGATTCTCTACAGCGAGTGGCGAATCGTCCTCCTCTGCAACAAGTGCTTGGCCCGCGTCGAATCCACCGAGCTCTGCTCCTACTGCTTCAACGACTCGTCGTCCGGCCACTGCTTCTCTTGCCGCCAGTGCAGGCGGCGAGTCCACAGGGACTGCGATTCCGAGTACCGCAGCGCCGCCGTCTGGTCCGGGTCGTCGTCTGCGGCCGCCGACGAGGTCTCTGTCTGCGCCGATTGCTGGGTGTCGGAGTCGCTGGCCAGGTGGAGGAGAAGTAGAAACGTCGGTAGTGGTAGAAAGAGTAGGGCGGATTTGGGATTGGGGAGATCTAGGGTTTTGAAGTATGAGAGGAAATGTGATCCAAATTCGACTGATTCATCTACAGAGGAGGAGGCCGGGTGCTTGAGACTTGATGGTGTTGAAGAAGAAGAAGAAGAGATTGGGGATGATGAGCCGTTGAAGGAAGGACAAGGGAGTTGCTCAAATGGTGTCGAATCGGAGTCTCCACCGTCTTATAAACAAGATGACTGCAACTGTATCGCTTTGCCGAAAGTCGAAATTGGGAATGCAAAGCTTGATCCTTATTATTTCAAGTACAGGAGGAGGAGCAGTGTTGATCAGTCTCTGTTGACGTACAAGAGGAGGAGCATTGTTGACTGCTTTAAGATTGATTGTCCTCTGTTGACATATAAGAGGAGAGGCAGTGTTGACTATCGGTTTATGTTTACGTATAAGAGGAGGAGGAACTTTGATCAATCTATGTTGACATATAAGAGGAGGAGACCTGAAATCGTTTACGCGAGTTCAAAGATGCAGCTCGAGGGTCAGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

315

Amino Acids

36.23

Weight (kDa)

8.65

Isoelectric Point (pI)

84.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 630
AccI GTMKAC 1 cut(s) 84
AccII CGCG 2 cut(s) 174, 914
AciI CCGC 8 cut(s) 172, 241, 253, 286, 294, 320, 324, 422
AclWI GGATC 2 cut(s) 467, 686
AcoI YGGCCR 3 cut(s) 223, 321, 372
AcsI RAATTY 1 cut(s) 478
AcuI CTGAAG 1 cut(s) 101
AfaI GTAC 3 cut(s) 284, 710, 749
AfiI CCNNNNNNNGG 4 cut(s) 79, 300, 354, 381
AgsI TTSAA 6 cut(s) 208, 454, 536, 574, 706, 921
AhdI GACNNNNNGTC 1 cut(s) 217
AjnI CCWGG 1 cut(s) 374
AjuI GAANNNNNNNTTGG 2 cut(s) 537, 569
AluBI AGCT 4 cut(s) 115, 190, 688, 931
AluI AGCT 4 cut(s) 115, 190, 688, 931
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 5 cut(s) 340, 514, 621, 741, 889
AlwI GGATC 2 cut(s) 467, 686
AlwNI CAGNNNCTG 2 cut(s) 270, 739
Ama87I CYCGRG 2 cut(s) 36, 932
AoxI GGCC 5 cut(s) 168, 223, 321, 372, 507
ApeKI GCWGC 3 cut(s) 69, 288, 928
ApoI RAATTY 1 cut(s) 478
AspLEI GCGC 2 cut(s) 293, 347
AspS9I GGNCC 2 cut(s) 169, 303
AsuC2I CCSGG 2 cut(s) 307, 511
AvaI CYCGRG 2 cut(s) 36, 932
AvaII GGWCC 1 cut(s) 303
AxyI CCTNAGG 1 cut(s) 77
BalI TGGCCA 1 cut(s) 374
BanII GRGCYC 1 cut(s) 192
BbsI GAAGAC 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 3 cut(s) 56, 300, 940
BccI CCATC 1 cut(s) 521
BceAI ACGGC 2 cut(s) 281, 553
BcgI CGANNNNNNTGC 2 cut(s) 634, 668
BciT130I CCWGG 1 cut(s) 376
BclI TGATCA 2 cut(s) 730, 865
BcnI CCSGG 2 cut(s) 307, 511
BcoDI GTCTC 5 cut(s) 340, 514, 621, 741, 889
BfaI CTAG 1 cut(s) 444
BfmI CTRYAG 2 cut(s) 127, 495
BfoI RGCGCY 1 cut(s) 294
BglII AGATCT 1 cut(s) 440
BisI GCNGC 8 cut(s) 70, 241, 254, 289, 294, 321, 324, 929
BlsI GCNGC 8 cut(s) 71, 242, 255, 290, 295, 322, 325, 930
Bme1390I CCNGG 3 cut(s) 307, 376, 511
Bme18I GGWCC 1 cut(s) 303
BmeRI GACNNNNNGTC 1 cut(s) 217
BmeT110I CYCGRG 2 cut(s) 36, 932
BmgT120I GGNCC 2 cut(s) 169, 303
BmrFI CCNGG 3 cut(s) 307, 376, 511
BmsI GCATC 1 cut(s) 915
BpiI GAAGAC 1 cut(s) 38
BplI GAGNNNNNCTC 2 cut(s) 179, 211
BpuEI CTTGAG 1 cut(s) 538
BpuMI CCSGG 2 cut(s) 307, 511
BsaAI YACGTR 1 cut(s) 843
BsaI GGTCTC 2 cut(s) 340, 889
BsaXI ACNNNNNCTCC 8 cut(s) 373, 403, 497, 527, 709, 739, 802, 832
Bsc4I CCNNNNNNNGG 4 cut(s) 79, 300, 354, 381
Bse1I ACTGG 1 cut(s) 244
Bse21I CCTNAGG 1 cut(s) 77
Bse3DI GCAATG 1 cut(s) 64
BseBI CCWGG 1 cut(s) 376
BseGI GGATG 1 cut(s) 565
BseLI CCNNNNNNNGG 4 cut(s) 79, 300, 354, 381
BseMI GCAATG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 91
BseNI ACTGG 1 cut(s) 244
BseX3I CGGCCG 1 cut(s) 321
BseXI GCAGC 3 cut(s) 56, 300, 940
BseYI CCCAGC 1 cut(s) 354
BsgI GTGCAG 1 cut(s) 268
Bsh1236I CGCG 2 cut(s) 174, 914
Bsh1285I CGRYCG 1 cut(s) 324
BshFI GGCC 5 cut(s) 170, 225, 323, 374, 509
BsiEI CGRYCG 1 cut(s) 324
BsiHKAI GWGCWC 1 cut(s) 192
BsiHKCI CYCGRG 2 cut(s) 36, 932
BsiSI CCGG 3 cut(s) 222, 306, 510
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 4 cut(s) 79, 300, 354, 381
BsmAI GTCTC 5 cut(s) 340, 514, 621, 741, 889
BsmFI GGGAC 1 cut(s) 281
BsmI GAATGC 1 cut(s) 685
BsnI GGCC 5 cut(s) 170, 225, 323, 374, 509
Bso31I GGTCTC 2 cut(s) 340, 889
BsoBI CYCGRG 2 cut(s) 36, 932
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 5 cut(s) 440, 472, 691, 730, 865
BspACI CCGC 8 cut(s) 172, 241, 253, 286, 294, 320, 324, 422
BspANI GGCC 5 cut(s) 170, 225, 323, 374, 509
BspCNI CTCAG 1 cut(s) 90
BspFNI CGCG 2 cut(s) 174, 914
BspPI GGATC 2 cut(s) 467, 686
BspTNI GGTCTC 2 cut(s) 340, 889
BsrDI GCAATG 1 cut(s) 64
BsrI ACTGG 1 cut(s) 244
BssMI GATC 5 cut(s) 440, 472, 691, 730, 865
Bst2UI CCWGG 1 cut(s) 376
Bst4CI ACNGT 2 cut(s) 624, 650
Bst6I CTCTTC 1 cut(s) 543
BstAPI GCANNNNNTGC 1 cut(s) 162
BstBAI YACGTR 1 cut(s) 843
BstC8I GCNNGC 3 cut(s) 172, 251, 372
BstDEI CTNAG 1 cut(s) 77
BstF5I GGATG 1 cut(s) 565
BstFNI CGCG 2 cut(s) 174, 914
BstH2I RGCGCY 1 cut(s) 294
BstHHI GCGC 2 cut(s) 293, 347
BstKTI GATC 5 cut(s) 443, 475, 694, 733, 868
BstMAI GTCTC 5 cut(s) 340, 514, 621, 741, 889
BstMBI GATC 5 cut(s) 440, 472, 691, 730, 865
BstMCI CGRYCG 1 cut(s) 324
BstMWI GCNNNNNNNGC 7 cut(s) 69, 162, 171, 201, 237, 246, 351
BstNI CCWGG 1 cut(s) 376
BstSCI CCNGG 3 cut(s) 305, 374, 509
BstSFI CTRYAG 2 cut(s) 127, 495
BstSNI TACGTA 1 cut(s) 843
BstUI CGCG 2 cut(s) 174, 914
BstV1I GCAGC 3 cut(s) 56, 300, 940
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 440
BstYI RGATCY 1 cut(s) 440
BstZI CGGCCG 1 cut(s) 321
Bsu36I CCTNAGG 1 cut(s) 77
BsuRI GGCC 5 cut(s) 170, 225, 323, 374, 509
BtsCI GGATG 1 cut(s) 565
BtsI GCAGTG 4 cut(s) 22, 226, 730, 823
BtsIMutI CAGTG 6 cut(s) 22, 226, 251, 730, 823, 947
Cac8I GCNNGC 3 cut(s) 172, 251, 372
CaiI CAGNNNCTG 2 cut(s) 270, 739
CciNI GCGGCCGC 1 cut(s) 321
CfoI GCGC 2 cut(s) 293, 347
Cfr13I GGNCC 2 cut(s) 169, 303
CseI GACGC 1 cut(s) 163
Csp6I GTAC 3 cut(s) 283, 709, 748
CviQI GTAC 3 cut(s) 283, 709, 748
DdeI CTNAG 1 cut(s) 77
DpnI GATC 5 cut(s) 442, 474, 693, 732, 867
DpnII GATC 5 cut(s) 440, 472, 691, 730, 865
DriI GACNNNNNGTC 1 cut(s) 217
EaeI YGGCCR 3 cut(s) 223, 321, 372
EagI CGGCCG 1 cut(s) 321
Eam1104I CTCTTC 1 cut(s) 543
Eam1105I GACNNNNNGTC 1 cut(s) 217
EarI CTCTTC 1 cut(s) 543
EciI GGCGGA 1 cut(s) 437
Ecl136II GAGCTC 1 cut(s) 190
EclXI CGGCCG 1 cut(s) 321
Eco105I TACGTA 1 cut(s) 843
Eco24I GRGCYC 1 cut(s) 192
Eco31I GGTCTC 2 cut(s) 340, 889
Eco47I GGWCC 1 cut(s) 303
Eco52I CGGCCG 1 cut(s) 321
Eco53kI GAGCTC 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 101
Eco81I CCTNAGG 1 cut(s) 77
Eco88I CYCGRG 2 cut(s) 36, 932
EcoICRI GAGCTC 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 374
EcoT38I GRGCYC 1 cut(s) 192
FaiI YATR 9 cut(s) 459, 630, 802, 804, 836, 846, 875, 883, 885
FaqI GGGAC 1 cut(s) 281
FauI CCCGC 1 cut(s) 179
FbaI TGATCA 2 cut(s) 730, 865
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 8 cut(s) 70, 241, 254, 289, 294, 321, 324, 929
FokI GGATG 1 cut(s) 572
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 8 cut(s) 70, 241, 254, 289, 294, 321, 324, 929
FspBI CTAG 1 cut(s) 444
GlaI GCGC 2 cut(s) 292, 346
GluI GCNGC 8 cut(s) 70, 241, 254, 289, 294, 321, 324, 929
GsaI CCCAGC 1 cut(s) 358
HaeII RGCGCY 1 cut(s) 294
HaeIII GGCC 5 cut(s) 170, 225, 323, 374, 509
HapII CCGG 3 cut(s) 222, 306, 510
HgaI GACGC 1 cut(s) 163
HhaI GCGC 2 cut(s) 293, 347
Hin6I GCGC 2 cut(s) 291, 345
HinP1I GCGC 2 cut(s) 291, 345
HincII GTYRAC 6 cut(s) 85, 744, 769, 798, 823, 879
HindII GTYRAC 6 cut(s) 85, 744, 769, 798, 823, 879
HindIII AAGCTT 2 cut(s) 113, 686
HpaII CCGG 3 cut(s) 222, 306, 510
Hpy166II GTNNAC 9 cut(s) 85, 262, 744, 769, 798, 823, 840, 879, 910
Hpy188I TCNGA 4 cut(s) 120, 280, 364, 613
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 9 cut(s) 85, 262, 744, 769, 798, 823, 840, 879, 910
Hpy99I CGWCG 7 cut(s) 10, 13, 179, 220, 316, 332, 401
HpyAV CCTTC 2 cut(s) 568, 572
HpyCH4III ACNGT 2 cut(s) 624, 650
HpyCH4IV ACGT 3 cut(s) 396, 746, 842
HpyCH4V TGCA 5 cut(s) 156, 249, 645, 683, 928
HpyF10VI GCNNNNNNNGC 7 cut(s) 69, 162, 171, 201, 237, 246, 351
HpyF3I CTNAG 1 cut(s) 77
HpySE526I ACGT 3 cut(s) 396, 746, 842
HspAI GCGC 2 cut(s) 291, 345
Ksp22I TGATCA 2 cut(s) 730, 865
Kzo9I GATC 5 cut(s) 440, 472, 691, 730, 865
LmnI GCTCC 3 cut(s) 200, 720, 759
Lsp1109I GCAGC 3 cut(s) 56, 300, 940
LweI GCATC 1 cut(s) 915
MaeI CTAG 1 cut(s) 444
MaeII ACGT 3 cut(s) 396, 746, 842
MalI GATC 5 cut(s) 442, 474, 693, 732, 867
MboI GATC 5 cut(s) 440, 472, 691, 730, 865
MboII GAAGA 9 cut(s) 34, 37, 40, 43, 548, 551, 554, 557, 560
MflI RGATCY 1 cut(s) 440
MhlI GDGCHC 1 cut(s) 192
MlsI TGGCCA 1 cut(s) 374
MluCI AATT 2 cut(s) 478, 672
MluNI TGGCCA 1 cut(s) 374
MlyI GAGTC 5 cut(s) 28, 206, 267, 374, 623
MmeI TCCRAC 1 cut(s) 342
Mox20I TGGCCA 1 cut(s) 374
MscI TGGCCA 1 cut(s) 374
MseI TTAA 1 cut(s) 777
Msp20I TGGCCA 1 cut(s) 374
MspI CCGG 3 cut(s) 222, 306, 510
MspR9I CCNGG 3 cut(s) 307, 376, 511
Mva1269I GAATGC 1 cut(s) 685
MvaI CCWGG 1 cut(s) 376
MvnI CGCG 2 cut(s) 174, 914
MwoI GCNNNNNNNGC 7 cut(s) 69, 162, 171, 201, 237, 246, 351
NciI CCSGG 2 cut(s) 307, 511
NdeII GATC 5 cut(s) 440, 472, 691, 730, 865
NotI GCGGCCGC 1 cut(s) 321
PaeR7I CTCGAG 1 cut(s) 932
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PctI GAATGC 1 cut(s) 685
PfeI GAWTC 6 cut(s) 121, 141, 179, 275, 488, 608
PflFI GACNNNGTC 1 cut(s) 332
PkrI GCNGC 8 cut(s) 71, 242, 255, 290, 295, 322, 325, 930
PleI GAGTC 5 cut(s) 28, 206, 266, 373, 622
PpsI GAGTC 5 cut(s) 28, 206, 266, 373, 622
Ppu21I YACGTR 1 cut(s) 843
PsiI TTATAA 1 cut(s) 630
Psp124BI GAGCTC 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 374
PspFI CCCAGC 1 cut(s) 354
PspGI CCWGG 1 cut(s) 374
PspPI GGNCC 2 cut(s) 169, 303
PspXI VCTCGAGB 1 cut(s) 932
PstNI CAGNNNCTG 2 cut(s) 270, 739
PsuI RGATCY 1 cut(s) 440
PsyI GACNNNGTC 1 cut(s) 332
RsaI GTAC 3 cut(s) 284, 710, 749
RsaNI GTAC 3 cut(s) 283, 709, 748
SacI GAGCTC 1 cut(s) 192
SalI GTCGAC 1 cut(s) 83
SaqAI TTAA 1 cut(s) 777
SatI GCNGC 8 cut(s) 70, 241, 254, 289, 294, 321, 324, 929
Sau3AI GATC 5 cut(s) 440, 472, 691, 730, 865
Sau96I GGNCC 2 cut(s) 169, 303
SchI GAGTC 5 cut(s) 28, 206, 267, 374, 623
ScrFI CCNGG 3 cut(s) 307, 376, 511
SduI GDGCHC 1 cut(s) 192
SfaNI GCATC 1 cut(s) 915
SfcI CTRYAG 2 cut(s) 127, 495
Sfr274I CTCGAG 1 cut(s) 932
SinI GGWCC 1 cut(s) 303
SlaI CTCGAG 1 cut(s) 932
SmlI CTYRAG 2 cut(s) 517, 932
SmoI CTYRAG 2 cut(s) 517, 932
SnaBI TACGTA 1 cut(s) 843
Sse9I AATT 2 cut(s) 478, 672
SsiI CCGC 8 cut(s) 172, 241, 253, 286, 294, 320, 324, 422
SspMI CTAG 1 cut(s) 444
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 3 cut(s) 305, 374, 509
TaaI ACNGT 2 cut(s) 624, 650
TaiI ACGT 3 cut(s) 399, 749, 845
TaqI TCGA 6 cut(s) 84, 177, 482, 606, 669, 933
TasI AATT 2 cut(s) 478, 672
TatI WGTACW 1 cut(s) 708
TauI GCSGC 5 cut(s) 243, 256, 296, 323, 326
TfiI GAWTC 6 cut(s) 121, 141, 179, 275, 488, 608
Tru1I TTAA 1 cut(s) 777
Tru9I TTAA 1 cut(s) 777
TscAI CASTG 6 cut(s) 22, 233, 251, 730, 823, 947
TseI GCWGC 3 cut(s) 69, 288, 928
TspDTI ATGAA 1 cut(s) 480
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 6 cut(s) 22, 233, 251, 730, 823, 947
Tth111I GACNNNGTC 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 303
XapI RAATTY 1 cut(s) 478
XhoI CTCGAG 1 cut(s) 932
XmiI GTMKAC 1 cut(s) 84
XspI CTAG 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.