Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000711

Physical Location & Seq

Genomic Coordinates Forward (+)

22288429 .. 22289143

Gene Structure 715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1108700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCAGTTGCAGGAGCAATCATTGGTGCTGCAATTGGCGGATGGATGAACGATGCCCTAGGCCGGAAAAAATCAATCATAGCAGCAGATTTTGTGTTCTTCATTGGAGCAATAGTAATGGCTGTTGCACCAGCTCCGTGGGTGATCATAATCGGGAGAATTCTAGTCGATTTTGGAGTTGGAATGGCTTCCATGACCTCGCCGCTCTACATCTCAGAAGCCTCTCCTGCTAGAATCCGAGGTGCCCTGGTCAGTACAAATGGTTTTCTAATCACTGGAGGACAGTTCTTGTCATACCTTAAAAATCTTGCTTTCACCAAGGCTCCAGGAACATGGCGTTGGATGCTCGGCGTAGCAGGAGTTCTGGCTTTGAATAAGGCAGATGAGGATAGGGCCATCTTAGAGAAAATTTATCTTGCCGAAGAAGTTGAGCATGAAATACAAGCCTTGCATGAATTCGTCCAAGCTGAAAAGGCCGAGGGAGGAGATGCTAGAGAAGGTGTGCTAGCAAGATTAAAGGGTGCCTTCAACAACCCTGTTGTTCGAAGAGGACTCTATGCAGGCATTACTGTCCAAGTGGCTCAGCAATTTGTCGGTATCAACACTGTCATGTACTACAGCCCAACTATTGTTCAGTTTGCCGGGTTTGCATCCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

220

Amino Acids

23.36

Weight (kDa)

7.95

Isoelectric Point (pI)

28.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	2 - 124	3.7e-34	Sugar (and other) transporter
MFS_1	PF07690	3 - 216	2.1e-13	Major Facilitator Superfamily
Sugar_tr	PF00083	126 - 217	8.1e-11	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35740 AT4G16480 AT4G16480 AT4G16480
fragaria_vesca	FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00760
malus_domestica	MD05G1108700.v1.1 MD05G1359700.v1.1 MD05G1359900.v1.1 MD10G1335300.v1.1 MD10G1335500.v1.1
prunus_persica	Prupe.4G008300_v2.0.a1 Prupe.4G008300_v2.0.a1 Prupe.4G008400_v2.0.a1
pyrus_communis	pycom05g32480 pycom05g32490 pycom10g28510
rosa_chinensis	RchiOBHm_Chr1g0370501 RchiOBHm_Chr4g0424641 RchiOBHm_Chr5g0000981 RchiOBHm_Chr5g0001001 RchiOBHm_Chr7g0190531
rosa_laevigata	RLG00000004519 RLG00000030911 RLG00000030912
rosa_multiflora	Rmu_co8357507.1_g000001 Rmu_co8503263.1_g000001 Rmu_sc0000255.1_g000023 Rmu_sc0000255.1_g000024 Rmu_sc0002558.1_g000005 Rmu_sc0007329.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075280 Rroxscaffold_1G00075290 Rroxscaffold_3G00264530
rosa_rugosa	Rorug04G0198700 Rorug04G0388100 Rorug04G0388200 Rorug04G0388300 Rorug04G0388400 Rorug04G0388500 Rorug04G0388600 Rorug04G0388700 Rorug04G0388800
rosa_samantha	Rh1AG366200 Rh1BG329000 Rh1CG342600 Rh1DG359300 Rh1DG360000 Rh4AG255600 Rh4BG261000 Rh4CG272100 Rh4DG255600 Rh5AG007800 Rh5AG007900 Rh5BG010000 Rh5BG010100 Rh5CG008500 Rh5CG008600 Rh5DG008500 Rh5DG008600
rosa_wichuraiana	Rw1G032250 Rw5G000810 Rw5G000820 Rw7G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	242, 521
AccBSI	CCGCTC	1 cut(s)	205
AciI	CCGC	2 cut(s)	39, 203
AcsI	RAATTY	3 cut(s)	159, 408, 455
AfaI	GTAC	2 cut(s)	256, 614
AfiI	CCNNNNNNNGG	1 cut(s)	63
AgsI	TTSAA	2 cut(s)	373, 529
AjnI	CCWGG	2 cut(s)	246, 325
AjuI	GAANNNNNNNTTGG	2 cut(s)	322, 354
AluBI	AGCT	2 cut(s)	134, 467
AluI	AGCT	2 cut(s)	134, 467
AoxI	GGCC	3 cut(s)	61, 393, 474
ApeKI	GCWGC	2 cut(s)	29, 83
ApoI	RAATTY	3 cut(s)	159, 408, 455
Asp700I	GAANNNNTTC	1 cut(s)	187
AspA2I	CCTAGG	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	393
AsuC2I	CCSGG	1 cut(s)	643
AsuHPI	GGTGA	2 cut(s)	154, 307
AsuII	TTCGAA	1 cut(s)	544
AsuNHI	GCTAGC	1 cut(s)	505
AvrII	CCTAGG	1 cut(s)	58
BaeGI	GKGCMC	1 cut(s)	247
BanI	GGYRCC	2 cut(s)	242, 521
BbvI	GCAGC	2 cut(s)	16, 95
BccI	CCATC	2 cut(s)	36, 404
BciT130I	CCWGG	2 cut(s)	248, 327
BclI	TGATCA	1 cut(s)	144
BcnI	CCSGG	1 cut(s)	643
BfaI	CTAG	6 cut(s)	59, 164, 231, 492, 506, 658
BfmI	CTRYAG	1 cut(s)	616
BisI	GCNGC	3 cut(s)	30, 84, 203
BlnI	CCTAGG	1 cut(s)	58
BlpI	GCTNAGC	1 cut(s)	582
BlsI	GCNGC	3 cut(s)	31, 85, 204
Bme1390I	CCNGG	3 cut(s)	248, 327, 643
BmgT120I	GGNCC	1 cut(s)	393
BmiI	GGNNCC	3 cut(s)	244, 324, 523
BmrFI	CCNGG	3 cut(s)	248, 327, 643
BmsI	GCATC	3 cut(s)	43, 333, 478
BmtI	GCTAGC	1 cut(s)	509
BpmI	CTGGAG	2 cut(s)	297, 309
Bpu1102I	GCTNAGC	1 cut(s)	582
Bpu14I	TTCGAA	1 cut(s)	544
BpuMI	CCSGG	1 cut(s)	643
BsaBI	GATNNNNATC	1 cut(s)	149
BsaJI	CCNNGG	6 cut(s)	58, 137, 238, 246, 318, 477
BsaXI	ACNNNNNCTCC	4 cut(s)	99, 129, 307, 337
Bsc4I	CCNNNNNNNGG	1 cut(s)	63
Bse1I	ACTGG	1 cut(s)	280
Bse8I	GATNNNNATC	1 cut(s)	149
BseBI	CCWGG	2 cut(s)	248, 327
BseDI	CCNNGG	6 cut(s)	58, 137, 238, 246, 318, 477
BseGI	GGATG	4 cut(s)	47, 51, 348, 650
BseJI	GATNNNNATC	1 cut(s)	149
BseLI	CCNNNNNNNGG	1 cut(s)	63
BseMII	CTCAG	2 cut(s)	228, 596
BseNI	ACTGG	1 cut(s)	280
BseRI	GAGGAG	1 cut(s)	498
BseSI	GKGCMC	1 cut(s)	247
BseXI	GCAGC	2 cut(s)	16, 95
BshFI	GGCC	3 cut(s)	63, 395, 476
BshNI	GGYRCC	2 cut(s)	242, 521
BsiSI	CCGG	2 cut(s)	64, 642
BslI	CCNNNNNNNGG	1 cut(s)	63
BsnI	GGCC	3 cut(s)	63, 395, 476
Bsp119I	TTCGAA	1 cut(s)	544
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	1 cut(s)	144
Bsp1720I	GCTNAGC	1 cut(s)	582
BspACI	CCGC	2 cut(s)	39, 203
BspANI	GGCC	3 cut(s)	63, 395, 476
BspCNI	CTCAG	2 cut(s)	227, 595
BspLI	GGNNCC	3 cut(s)	244, 324, 523
BspOI	GCTAGC	1 cut(s)	509
BspT104I	TTCGAA	1 cut(s)	544
BspT107I	GGYRCC	2 cut(s)	242, 521
BsrBI	CCGCTC	1 cut(s)	205
BsrI	ACTGG	1 cut(s)	280
BssECI	CCNNGG	6 cut(s)	58, 137, 238, 246, 318, 477
BssMI	GATC	1 cut(s)	144
BssT1I	CCWWGG	2 cut(s)	58, 318
Bst2UI	CCWGG	2 cut(s)	248, 327
Bst4CI	ACNGT	3 cut(s)	285, 571, 607
Bst6I	CTCTTC	1 cut(s)	541
BstBI	TTCGAA	1 cut(s)	544
BstC8I	GCNNGC	2 cut(s)	507, 562
BstDEI	CTNAG	3 cut(s)	214, 400, 582
BstDSI	CCRYGG	1 cut(s)	137
BstF5I	GGATG	4 cut(s)	47, 51, 348, 650
BstKTI	GATC	1 cut(s)	147
BstMBI	GATC	1 cut(s)	144
BstMWI	GCNNNNNNNGC	4 cut(s)	227, 343, 473, 647
BstNI	CCWGG	2 cut(s)	248, 327
BstSCI	CCNGG	3 cut(s)	246, 325, 641
BstSFI	CTRYAG	1 cut(s)	616
BstSLI	GKGCMC	1 cut(s)	247
BstV1I	GCAGC	2 cut(s)	16, 95
BstXI	CCANNNNNNTGG	2 cut(s)	138, 333
BsuRI	GGCC	3 cut(s)	63, 395, 476
BtgI	CCRYGG	1 cut(s)	137
BtsCI	GGATG	4 cut(s)	47, 51, 348, 650
BtsIMutI	CAGTG	2 cut(s)	273, 603
Cac8I	GCNNGC	2 cut(s)	507, 562
Cfr13I	GGNCC	1 cut(s)	393
Csp6I	GTAC	2 cut(s)	255, 613
CviAII	CATG	5 cut(s)	193, 333, 434, 452, 610
CviQI	GTAC	2 cut(s)	255, 613
DdeI	CTNAG	3 cut(s)	214, 400, 582
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	541
EarI	CTCTTC	1 cut(s)	541
EciI	GGCGGA	1 cut(s)	54
Eco130I	CCWWGG	2 cut(s)	58, 318
EcoRI	GAATTC	2 cut(s)	159, 455
EcoRII	CCWGG	2 cut(s)	246, 325
EcoT14I	CCWWGG	2 cut(s)	58, 318
ErhI	CCWWGG	2 cut(s)	58, 318
FaeI	CATG	5 cut(s)	196, 336, 437, 455, 613
FaiI	YATR	9 cut(s)	80, 149, 194, 295, 334, 435, 453, 558, 611
FalI	AAGNNNNNCTT	2 cut(s)	509, 541
FatI	CATG	5 cut(s)	192, 332, 433, 451, 609
FbaI	TGATCA	1 cut(s)	144
Fnu4HI	GCNGC	3 cut(s)	30, 84, 203
FokI	GGATG	4 cut(s)	54, 58, 355, 637
Fsp4HI	GCNGC	3 cut(s)	30, 84, 203
FspBI	CTAG	6 cut(s)	59, 164, 231, 492, 506, 658
GluI	GCNGC	3 cut(s)	30, 84, 203
GsuI	CTGGAG	2 cut(s)	297, 309
HaeIII	GGCC	3 cut(s)	63, 395, 476
HapII	CCGG	2 cut(s)	64, 642
Hin1II	CATG	5 cut(s)	196, 336, 437, 455, 613
HinfI	GANTC	2 cut(s)	234, 552
HpaII	CCGG	2 cut(s)	64, 642
HphI	GGTGA	2 cut(s)	154, 307
Hpy188I	TCNGA	2 cut(s)	217, 239
Hpy188III	TCNNGA	1 cut(s)	154
HpyAV	CCTTC	2 cut(s)	491, 535
HpyCH4III	ACNGT	3 cut(s)	285, 571, 607
HpyCH4V	TGCA	6 cut(s)	11, 32, 128, 451, 560, 650
HpyF10VI	GCNNNNNNNGC	4 cut(s)	227, 343, 473, 647
HpyF3I	CTNAG	3 cut(s)	214, 400, 582
Hsp92II	CATG	5 cut(s)	196, 336, 437, 455, 613
Ksp22I	TGATCA	1 cut(s)	144
Kzo9I	GATC	1 cut(s)	144
LmnI	GCTCC	4 cut(s)	14, 107, 139, 328
Lsp1109I	GCAGC	2 cut(s)	16, 95
LweI	GCATC	3 cut(s)	43, 333, 478
MaeI	CTAG	6 cut(s)	59, 164, 231, 492, 506, 658
MalI	GATC	1 cut(s)	146
MbiI	CCGCTC	1 cut(s)	205
MboI	GATC	1 cut(s)	144
MboII	GAAGA	3 cut(s)	91, 434, 558
MfeI	CAATTG	1 cut(s)	33
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	5 cut(s)	33, 159, 408, 455, 587
MlyI	GAGTC	1 cut(s)	546
MmeI	TCCRAC	2 cut(s)	160, 320
MnlI	CCTC	8 cut(s)	208, 232, 233, 272, 379, 472, 476, 542
MroXI	GAANNNNTTC	1 cut(s)	187
MseI	TTAA	2 cut(s)	300, 515
MslI	CAYNNNNRTG	1 cut(s)	608
MspI	CCGG	2 cut(s)	64, 642
MspR9I	CCNGG	3 cut(s)	248, 327, 643
MunI	CAATTG	1 cut(s)	33
MvaI	CCWGG	2 cut(s)	248, 327
MwoI	GCNNNNNNNGC	4 cut(s)	227, 343, 473, 647
NciI	CCSGG	1 cut(s)	643
NdeII	GATC	1 cut(s)	144
NheI	GCTAGC	1 cut(s)	505
NlaIII	CATG	5 cut(s)	196, 336, 437, 455, 613
NlaIV	GGNNCC	3 cut(s)	244, 324, 523
NmeAIII	GCCGAG	2 cut(s)	327, 502
NspV	TTCGAA	1 cut(s)	544
PdmI	GAANNNNTTC	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	234
PfoI	TCCNGGA	1 cut(s)	325
PkrI	GCNGC	3 cut(s)	31, 85, 204
PleI	GAGTC	1 cut(s)	546
PpsI	GAGTC	1 cut(s)	546
Psp6I	CCWGG	2 cut(s)	246, 325
PspGI	CCWGG	2 cut(s)	246, 325
PspN4I	GGNNCC	3 cut(s)	244, 324, 523
PspPI	GGNCC	1 cut(s)	393
PsrI	GAACNNNNNNTAC	2 cut(s)	345, 377
RsaI	GTAC	2 cut(s)	256, 614
RsaNI	GTAC	2 cut(s)	255, 613
RseI	CAYNNNNRTG	1 cut(s)	608
SaqAI	TTAA	2 cut(s)	300, 515
SatI	GCNGC	3 cut(s)	30, 84, 203
Sau3AI	GATC	1 cut(s)	144
Sau96I	GGNCC	1 cut(s)	393
SchI	GAGTC	1 cut(s)	546
ScrFI	CCNGG	3 cut(s)	248, 327, 643
SduI	GDGCHC	1 cut(s)	247
SetI	ASST	6 cut(s)	136, 200, 244, 300, 469, 502
SfaNI	GCATC	3 cut(s)	43, 333, 478
SfcI	CTRYAG	1 cut(s)	616
SfuI	TTCGAA	1 cut(s)	544
SmiMI	CAYNNNNRTG	1 cut(s)	608
Sse9I	AATT	5 cut(s)	33, 159, 408, 455, 587
SsiI	CCGC	2 cut(s)	39, 203
SspMI	CTAG	6 cut(s)	59, 164, 231, 492, 506, 658
StyD4I	CCNGG	3 cut(s)	246, 325, 641
StyI	CCWWGG	2 cut(s)	58, 318
TaaI	ACNGT	3 cut(s)	285, 571, 607
TaqI	TCGA	2 cut(s)	168, 544
TasI	AATT	5 cut(s)	33, 159, 408, 455, 587
TatI	WGTACW	2 cut(s)	254, 612
TauI	GCSGC	1 cut(s)	205
TfiI	GAWTC	1 cut(s)	234
Tru1I	TTAA	2 cut(s)	300, 515
Tru9I	TTAA	2 cut(s)	300, 515
TscAI	CASTG	2 cut(s)	280, 610
TseI	GCWGC	2 cut(s)	29, 83
TspDTI	ATGAA	4 cut(s)	62, 91, 450, 468
TspGWI	ACGGA	1 cut(s)	126
TspRI	CASTG	2 cut(s)	280, 610
XapI	RAATTY	3 cut(s)	159, 408, 455
XmaJI	CCTAGG	1 cut(s)	58
XmnI	GAANNNNTTC	1 cut(s)	187
XspI	CTAG	6 cut(s)	59, 164, 231, 492, 506, 658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.