Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000711

Physical Location & Seq

Genomic Coordinates Forward (+)

55686810 .. 55688699

Gene Structure 1890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0388300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

ATGATACTCGGACAAAGAAGGAGCCTCACAAAACCCCTGCAAAACCTCGTCCGCTTCCTCACAACCCACCCCAACCCGCCATCCCCGGTGAACCAGGCCCACCTCCTCCGCGTCTGCACCATCCTCTACCAGCAGCAGAACTCGCCCGAGTCACGTCTCCACTCCAATCTCAACTCCCTCAGCTTCAATCTCACCCACGAGTTCTTCCTCCAGGTCTGCAACAACTTCCCACTCTCATGGCGACCCGTCTATCTCTTCTACCAGTACACCCAGACCAATCCCAGTTTCACCCACACCGCCGTATCACTGAACAAAATGGTCGACGTCGTCGGAAAGTCCCGGAACATGGAGCTGTTCTGGGACTTGGTTAATGAGATGGGACGGCGCCGTTTGGTGAATGACAGGACTTTTGTTATTGGGTTGAGGACTCTGGCCAAGGCCAGAGAGTTGAACAAGTGTGTGGAGTTTTTTCATGTGATGAGTGGGTGTGGGATTGAGTGTAATGTGGAGACTTTGAACAAGGTGATCAAGAGTCTTTGTGGGTTGAAACTTGTTGAAGAGGCCAAGTTTGTGGTGTTTAAGTTGAAGGAGAGGATTAGGCCTGATGAGGTTACTTTTAAGTGTTTGATTCAAGGGTTTTGTGATGTGGGGGATTTGGTTGAGGCTTCCAAGATTTGGAATTTGATGGTGGATCAAGGGTTTGATCCTTGCGTTGGTGCTGTTGACAAGATGATGGAGACTCTTTTCAAGACGAATCGGGATGCTGAGGCGATGAAGCTGTTCCAGATGATGAGGTTGAAGAGGATGGAGGAGTTGGGGCTTTCGAGTTATAGGCTCGTGATTGAGTGGATGTGTAAGAAGGGGAAGGTGGAGAATGCACATGTGGTTTATGATGAAATGCGCAAGAGAGGGATCAAAGCAGATAACTTGACATGGGGGTCGCTGGTTTATGGTCTTTTGTCGAGAAGGAGAGTAAATGAAGCTTATGGGATTGTGGAAGGGATTGAGAAGCCGGATATCAGTGTGTACCATGGCTTGATGAAGGGGCTGTTGAGGTTAAAAAGGCCGGGGGAAGCGACACAAGTGTTTAGGGAGATGATCAAGAGGGGGTGTGAGCCTAACATGCACACATATGTCATGTTATTGCAAGGGCATTTGGGAAAGAGAGGGAGGAAGGGAAAGGATCCGCTTGTGAATTTCGACACCATTTTTGTTGGGGGTTTGGTTAAGGCAGGGAAGTCATTGGAAGCCACCAAGTATGTGGAGAGAGCGACTAAAAGAGGGCTTGAGGTGCCTAGATTTGATTATAACAAGTTTTTGCATTACTACTCGAACGAGGAAGGGGTGGCAATGTTTGAGGAGGTGGGGAAGAAATTAAGGAAGGCCGGAATGGTTGATTTGGCGGATATTTTCCAGAGATATGGGGAGAAAATGGCGACGAGAGATAGAAGAAGAGATAGAGTTGTCGAGCCATTAGTAGAGCGTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

496

Amino Acids

57.33

Weight (kDa)

9.53

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	199 - 230	2e-07	PPR repeat
PPR_2	PF13041	201 - 236	3.8e-06	PPR repeat family
PPR_2	PF13041	276 - 319	4.2e-10	PPR repeat family
PPR_2	PF13041	338 - 385	2.6e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35740 AT4G16480 AT4G16480 AT4G16480
fragaria_vesca	FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00760
malus_domestica	MD05G1108700.v1.1 MD05G1359700.v1.1 MD05G1359900.v1.1 MD10G1335300.v1.1 MD10G1335500.v1.1
prunus_persica	Prupe.4G008300_v2.0.a1 Prupe.4G008300_v2.0.a1 Prupe.4G008400_v2.0.a1
pyrus_communis	pycom05g32480 pycom05g32490 pycom10g28510
rosa_chinensis	RchiOBHm_Chr1g0370501 RchiOBHm_Chr4g0424641 RchiOBHm_Chr5g0000981 RchiOBHm_Chr5g0001001 RchiOBHm_Chr7g0190531
rosa_laevigata	RLG00000004519 RLG00000030911 RLG00000030912
rosa_multiflora	Rmu_co8357507.1_g000001 Rmu_co8503263.1_g000001 Rmu_sc0000255.1_g000023 Rmu_sc0000255.1_g000024 Rmu_sc0002558.1_g000005 Rmu_sc0007329.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075280 Rroxscaffold_1G00075290 Rroxscaffold_3G00264530
rosa_rugosa	Rorug04G0198700 Rorug04G0388100 Rorug04G0388200 Rorug04G0388300 Rorug04G0388400 Rorug04G0388500 Rorug04G0388600 Rorug04G0388700 Rorug04G0388800
rosa_samantha	Rh1AG366200 Rh1BG329000 Rh1CG342600 Rh1DG359300 Rh1DG360000 Rh4AG255600 Rh4BG261000 Rh4CG272100 Rh4DG255600 Rh5AG007800 Rh5AG007900 Rh5BG010000 Rh5BG010100 Rh5CG008500 Rh5CG008600 Rh5DG008500 Rh5DG008600
rosa_wichuraiana	Rw1G032250 Rw5G000810 Rw5G000820 Rw7G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1308
AasI	GACNNNNNNGTC	1 cut(s)	937
AatII	GACGTC	1 cut(s)	327
Acc16I	TGCGCA	1 cut(s)	902
AccB1I	GGYRCC	2 cut(s)	384, 1291
AccB7I	CCANNNNNTGG	1 cut(s)	675
AccI	GTMKAC	1 cut(s)	321
AccII	CGCG	1 cut(s)	111
AciI	CCGC	6 cut(s)	52, 77, 109, 297, 1187, 1403
AclWI	GGATC	5 cut(s)	698, 699, 920, 1178, 1191
AcoI	YGGCCR	1 cut(s)	432
AcsI	RAATTY	2 cut(s)	679, 1195
AcyI	GRCGYC	2 cut(s)	324, 385
AfaI	GTAC	2 cut(s)	266, 1028
AfiI	CCNNNNNNNGG	3 cut(s)	346, 675, 713
AflIII	ACRYGT	1 cut(s)	880
AgsI	TTSAA	9 cut(s)	187, 451, 517, 547, 557, 586, 632, 748, 799
AjiI	CACGTC	1 cut(s)	155
AjnI	CCWGG	2 cut(s)	93, 210
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AluBI	AGCT	4 cut(s)	183, 352, 778, 983
AluI	AGCT	4 cut(s)	183, 352, 778, 983
Alw26I	GTCTC	3 cut(s)	161, 503, 731
AlwI	GGATC	5 cut(s)	698, 699, 920, 1178, 1191
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	7 cut(s)	96, 432, 438, 561, 599, 1064, 1383
ApeKI	GCWGC	1 cut(s)	133
ApoI	RAATTY	2 cut(s)	679, 1195
ArsI	GACNNNNNNTTYG	4 cut(s)	392, 424, 1193, 1225
Asp700I	GAANNNNTTC	1 cut(s)	779
AspLEI	GCGC	2 cut(s)	387, 903
AspS9I	GGNCC	1 cut(s)	97
AsuC2I	CCSGG	3 cut(s)	86, 340, 1068
AsuHPI	GGTGA	5 cut(s)	100, 184, 280, 406, 535
AvaI	CYCGRG	1 cut(s)	146
BaeI	ACNNNNGTAYC	2 cut(s)	285, 318
BalI	TGGCCA	1 cut(s)	434
BamHI	GGATCC	1 cut(s)	1183
BanI	GGYRCC	2 cut(s)	384, 1291
BauI	CACGAG	2 cut(s)	197, 836
BbvCI	CCTCAGC	2 cut(s)	179, 765
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	6 cut(s)	88, 128, 370, 679, 727, 799
BceAI	ACGGC	3 cut(s)	284, 372, 398
BciT130I	CCWGG	2 cut(s)	95, 212
BclI	TGATCA	2 cut(s)	525, 1098
BcnI	CCSGG	3 cut(s)	86, 340, 1068
BcoDI	GTCTC	3 cut(s)	161, 503, 731
BfaI	CTAG	1 cut(s)	1296
BfoI	RGCGCY	1 cut(s)	388
BisI	GCNGC	1 cut(s)	134
BlsI	GCNGC	1 cut(s)	135
Bme1390I	CCNGG	5 cut(s)	86, 95, 212, 340, 1068
BmeT110I	CYCGRG	1 cut(s)	146
BmgBI	CACGTC	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	4 cut(s)	23, 386, 1185, 1293
BmrFI	CCNGG	5 cut(s)	86, 95, 212, 340, 1068
BmrI	ACTGGG	1 cut(s)	276
BmsI	GCATC	1 cut(s)	751
BmuI	ACTGGG	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	194
Bpu10I	CCTNAGC	2 cut(s)	179, 765
BpuEI	CTTGAG	1 cut(s)	1307
BpuMI	CCSGG	3 cut(s)	86, 340, 1068
BsaHI	GRCGYC	2 cut(s)	324, 385
BsaJI	CCNNGG	4 cut(s)	84, 435, 1030, 1067
Bsc4I	CCNNNNNNNGG	3 cut(s)	346, 675, 713
Bse1I	ACTGG	2 cut(s)	262, 282
Bse3DI	GCAATG	1 cut(s)	1356
BseBI	CCWGG	2 cut(s)	95, 212
BseDI	CCNNGG	4 cut(s)	84, 435, 1030, 1067
BseGI	GGATG	5 cut(s)	80, 120, 766, 810, 855
BseLI	CCNNNNNNNGG	3 cut(s)	346, 675, 713
BseMI	GCAATG	1 cut(s)	1356
BseMII	CTCAG	2 cut(s)	193, 756
BseNI	ACTGG	2 cut(s)	262, 282
BseRI	GAGGAG	3 cut(s)	95, 824, 1373
BseXI	GCAGC	1 cut(s)	145
BsgI	GTGCAG	1 cut(s)	100
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	7 cut(s)	98, 434, 440, 563, 601, 1066, 1385
BshNI	GGYRCC	2 cut(s)	384, 1291
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	5 cut(s)	86, 340, 1013, 1067, 1386
BslFI	GGGAC	3 cut(s)	322, 374, 393
BslI	CCNNNNNNNGG	3 cut(s)	346, 675, 713
BsmAI	GTCTC	3 cut(s)	161, 503, 731
BsmBI	CGTCTC	1 cut(s)	161
BsmFI	GGGAC	3 cut(s)	322, 374, 393
BsmI	GAATGC	1 cut(s)	880
BsnI	GGCC	7 cut(s)	98, 434, 440, 563, 601, 1066, 1385
BsoBI	CYCGRG	1 cut(s)	146
Bsp143I	GATC	6 cut(s)	525, 691, 703, 912, 1098, 1183
Bsp19I	CCATGG	1 cut(s)	1030
BspACI	CCGC	6 cut(s)	52, 77, 109, 297, 1187, 1403
BspANI	GGCC	7 cut(s)	98, 434, 440, 563, 601, 1066, 1385
BspCNI	CTCAG	2 cut(s)	192, 757
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	4 cut(s)	23, 386, 1185, 1293
BspPI	GGATC	5 cut(s)	698, 699, 920, 1178, 1191
BspT107I	GGYRCC	2 cut(s)	384, 1291
BsrDI	GCAATG	1 cut(s)	1356
BsrI	ACTGG	2 cut(s)	262, 282
BssECI	CCNNGG	4 cut(s)	84, 435, 1030, 1067
BssMI	GATC	6 cut(s)	525, 691, 703, 912, 1098, 1183
BssNI	GRCGYC	2 cut(s)	324, 385
BssSI	CACGAG	2 cut(s)	197, 836
BssT1I	CCWWGG	2 cut(s)	435, 1030
Bst2BI	CACGAG	2 cut(s)	197, 836
Bst2UI	CCWGG	2 cut(s)	95, 212
Bst6I	CTCTTC	4 cut(s)	260, 552, 794, 1447
BstACI	GRCGYC	2 cut(s)	324, 385
BstDEI	CTNAG	2 cut(s)	179, 765
BstDSI	CCRYGG	1 cut(s)	1030
BstF5I	GGATG	5 cut(s)	80, 120, 766, 810, 855
BstFNI	CGCG	1 cut(s)	111
BstH2I	RGCGCY	1 cut(s)	388
BstHHI	GCGC	2 cut(s)	387, 903
BstKTI	GATC	6 cut(s)	528, 694, 706, 915, 1101, 1186
BstMAI	GTCTC	3 cut(s)	161, 503, 731
BstMBI	GATC	6 cut(s)	525, 691, 703, 912, 1098, 1183
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 1123, 1291
BstNI	CCWGG	2 cut(s)	95, 212
BstNSI	RCATGY	2 cut(s)	884, 1126
BstSCI	CCNGG	5 cut(s)	84, 93, 210, 338, 1066
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	145
BstX2I	RGATCY	1 cut(s)	1183
BstXI	CCANNNNNNTGG	4 cut(s)	237, 571, 1261, 1421
BstYI	RGATCY	1 cut(s)	1183
BsuRI	GGCC	7 cut(s)	98, 434, 440, 563, 601, 1066, 1385
BtgI	CCRYGG	1 cut(s)	1030
BtgZI	GCGATG	1 cut(s)	785
BtrI	CACGTC	1 cut(s)	155
BtsCI	GGATG	5 cut(s)	80, 120, 766, 810, 855
BtsIMutI	CAGTG	2 cut(s)	305, 1027
CfoI	GCGC	2 cut(s)	387, 903
Cfr13I	GGNCC	1 cut(s)	97
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	2 cut(s)	265, 1027
CviAII	CATG	8 cut(s)	237, 346, 473, 881, 933, 1031, 1123, 1138
CviQI	GTAC	2 cut(s)	265, 1027
DdeI	CTNAG	2 cut(s)	179, 765
DinI	GGCGCC	1 cut(s)	386
DpnI	GATC	6 cut(s)	527, 693, 705, 914, 1100, 1185
DpnII	GATC	6 cut(s)	525, 691, 703, 912, 1098, 1183
DrdI	GACNNNNNNGTC	1 cut(s)	937
DseDI	GACNNNNNNGTC	1 cut(s)	937
EaeI	YGGCCR	1 cut(s)	432
Eam1104I	CTCTTC	4 cut(s)	260, 552, 794, 1447
EarI	CTCTTC	4 cut(s)	260, 552, 794, 1447
EciI	GGCGGA	1 cut(s)	1418
Eco130I	CCWWGG	2 cut(s)	435, 1030
Eco147I	AGGCCT	1 cut(s)	601
Eco32I	GATATC	1 cut(s)	1018
Eco88I	CYCGRG	1 cut(s)	146
EcoRII	CCWGG	2 cut(s)	93, 210
EcoRV	GATATC	1 cut(s)	1018
EcoT14I	CCWWGG	2 cut(s)	435, 1030
EgeI	GGCGCC	1 cut(s)	386
EheI	GGCGCC	1 cut(s)	386
ErhI	CCWWGG	2 cut(s)	435, 1030
Esp3I	CGTCTC	1 cut(s)	161
FaeI	CATG	8 cut(s)	240, 349, 476, 884, 936, 1034, 1126, 1141
FaqI	GGGAC	3 cut(s)	322, 374, 393
FatI	CATG	8 cut(s)	236, 345, 472, 880, 932, 1030, 1122, 1137
FauI	CCCGC	1 cut(s)	84
FauNDI	CATATG	1 cut(s)	1132
FbaI	TGATCA	2 cut(s)	525, 1098
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	1 cut(s)	134
FokI	GGATG	5 cut(s)	67, 107, 773, 817, 862
Fsp4HI	GCNGC	1 cut(s)	134
FspBI	CTAG	1 cut(s)	1296
FspI	TGCGCA	1 cut(s)	902
GlaI	GCGC	2 cut(s)	386, 902
GluI	GCNGC	1 cut(s)	134
GsuI	CTGGAG	1 cut(s)	194
HaeII	RGCGCY	1 cut(s)	388
HaeIII	GGCC	7 cut(s)	98, 434, 440, 563, 601, 1066, 1385
HapII	CCGG	5 cut(s)	86, 340, 1013, 1067, 1386
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	2 cut(s)	387, 903
Hin1I	GRCGYC	2 cut(s)	324, 385
Hin1II	CATG	8 cut(s)	240, 349, 476, 884, 936, 1034, 1126, 1141
Hin6I	GCGC	2 cut(s)	385, 901
HinP1I	GCGC	2 cut(s)	385, 901
HincII	GTYRAC	2 cut(s)	322, 724
HindII	GTYRAC	2 cut(s)	322, 724
HindIII	AAGCTT	1 cut(s)	981
HinfI	GANTC	6 cut(s)	149, 427, 532, 628, 739, 754
HpaII	CCGG	5 cut(s)	86, 340, 1013, 1067, 1386
HphI	GGTGA	5 cut(s)	100, 184, 280, 406, 535
Hpy166II	GTNNAC	5 cut(s)	91, 267, 322, 724, 1027
Hpy188I	TCNGA	2 cut(s)	11, 332
Hpy188III	TCNNGA	8 cut(s)	529, 748, 758, 784, 838, 963, 1102, 1414
Hpy8I	GTNNAC	5 cut(s)	91, 267, 322, 724, 1027
Hpy99I	CGWCG	4 cut(s)	326, 329, 332, 1441
HpyCH4IV	ACGT	2 cut(s)	154, 324
HpyCH4V	TGCA	7 cut(s)	40, 117, 219, 878, 1126, 1147, 1321
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 1123, 1291
HpyF3I	CTNAG	2 cut(s)	179, 765
HpySE526I	ACGT	2 cut(s)	154, 324
Hsp92I	GRCGYC	2 cut(s)	324, 385
Hsp92II	CATG	8 cut(s)	240, 349, 476, 884, 936, 1034, 1126, 1141
HspAI	GCGC	2 cut(s)	385, 901
KasI	GGCGCC	1 cut(s)	384
Ksp22I	TGATCA	2 cut(s)	525, 1098
Kzo9I	GATC	6 cut(s)	525, 691, 703, 912, 1098, 1183
LmnI	GCTCC	2 cut(s)	21, 349
Lsp1109I	GCAGC	1 cut(s)	145
LweI	GCATC	1 cut(s)	751
MaeI	CTAG	1 cut(s)	1296
MaeII	ACGT	2 cut(s)	154, 324
MaeIII	GTNAC	2 cut(s)	150, 610
MalI	GATC	6 cut(s)	527, 693, 705, 914, 1100, 1185
MboI	GATC	6 cut(s)	525, 691, 703, 912, 1098, 1183
MboII	GAAGA	7 cut(s)	196, 247, 569, 811, 1381, 1461, 1464
MflI	RGATCY	1 cut(s)	1183
MlsI	TGGCCA	1 cut(s)	434
MluCI	AATT	3 cut(s)	679, 1195, 1373
MluNI	TGGCCA	1 cut(s)	434
Mly113I	GGCGCC	1 cut(s)	385
MlyI	GAGTC	4 cut(s)	158, 421, 541, 733
MmeI	TCCRAC	1 cut(s)	310
Mox20I	TGGCCA	1 cut(s)	434
MroXI	GAANNNNTTC	1 cut(s)	779
MscI	TGGCCA	1 cut(s)	434
MseI	TTAA	6 cut(s)	369, 579, 618, 1058, 1227, 1376
MslI	CAYNNNNRTG	2 cut(s)	235, 1131
Msp20I	TGGCCA	1 cut(s)	434
MspI	CCGG	5 cut(s)	86, 340, 1013, 1067, 1386
MspR9I	CCNGG	5 cut(s)	86, 95, 212, 340, 1068
Mva1269I	GAATGC	1 cut(s)	880
MvaI	CCWGG	2 cut(s)	95, 212
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	142, 1123, 1291
NarI	GGCGCC	1 cut(s)	385
NciI	CCSGG	3 cut(s)	86, 340, 1068
NcoI	CCATGG	1 cut(s)	1030
NdeI	CATATG	1 cut(s)	1132
NdeII	GATC	6 cut(s)	525, 691, 703, 912, 1098, 1183
NlaIII	CATG	8 cut(s)	240, 349, 476, 884, 936, 1034, 1126, 1141
NlaIV	GGNNCC	4 cut(s)	23, 386, 1185, 1293
NmuCI	GTSAC	1 cut(s)	150
NsbI	TGCGCA	1 cut(s)	902
NspI	RCATGY	2 cut(s)	884, 1126
PceI	AGGCCT	1 cut(s)	601
PciI	ACATGT	1 cut(s)	880
PctI	GAATGC	1 cut(s)	880
PdmI	GAANNNNTTC	1 cut(s)	779
PfeI	GAWTC	2 cut(s)	628, 754
PflFI	GACNNNGTC	1 cut(s)	326
PflMI	CCANNNNNTGG	1 cut(s)	675
PfoI	TCCNGGA	1 cut(s)	338
PkrI	GCNGC	1 cut(s)	135
PleI	GAGTC	4 cut(s)	157, 421, 540, 733
PluTI	GGCGCC	1 cut(s)	388
PpsI	GAGTC	4 cut(s)	157, 421, 540, 733
PscI	ACATGT	1 cut(s)	880
PsiI	TTATAA	1 cut(s)	1308
Psp6I	CCWGG	2 cut(s)	93, 210
PspGI	CCWGG	2 cut(s)	93, 210
PspN4I	GGNNCC	4 cut(s)	23, 386, 1185, 1293
PspPI	GGNCC	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	1183
PsyI	GACNNNGTC	1 cut(s)	326
RsaI	GTAC	2 cut(s)	266, 1028
RsaNI	GTAC	2 cut(s)	265, 1027
RseI	CAYNNNNRTG	2 cut(s)	235, 1131
SalI	GTCGAC	1 cut(s)	320
SaqAI	TTAA	6 cut(s)	369, 579, 618, 1058, 1227, 1376
SatI	GCNGC	1 cut(s)	134
Sau3AI	GATC	6 cut(s)	525, 691, 703, 912, 1098, 1183
Sau96I	GGNCC	1 cut(s)	97
SchI	GAGTC	4 cut(s)	158, 421, 541, 733
ScrFI	CCNGG	5 cut(s)	86, 95, 212, 340, 1068
SfaNI	GCATC	1 cut(s)	751
SfoI	GGCGCC	1 cut(s)	386
SmiMI	CAYNNNNRTG	2 cut(s)	235, 1131
SmlI	CTYRAG	1 cut(s)	1286
SmoI	CTYRAG	1 cut(s)	1286
Sse9I	AATT	3 cut(s)	679, 1195, 1373
SseBI	AGGCCT	1 cut(s)	601
SsiI	CCGC	6 cut(s)	52, 77, 109, 297, 1187, 1403
SspDI	GGCGCC	1 cut(s)	384
SspMI	CTAG	1 cut(s)	1296
StuI	AGGCCT	1 cut(s)	601
StyD4I	CCNGG	5 cut(s)	84, 93, 210, 338, 1066
StyI	CCWWGG	2 cut(s)	435, 1030
TaiI	ACGT	2 cut(s)	157, 327
TaqI	TCGA	6 cut(s)	321, 824, 962, 1200, 1331, 1467
TasI	AATT	3 cut(s)	679, 1195, 1373
TatI	WGTACW	1 cut(s)	264
TfiI	GAWTC	2 cut(s)	628, 754
Tru1I	TTAA	6 cut(s)	369, 579, 618, 1058, 1227, 1376
Tru9I	TTAA	6 cut(s)	369, 579, 618, 1058, 1227, 1376
TscAI	CASTG	2 cut(s)	312, 1027
TseFI	GTSAC	1 cut(s)	150
TseI	GCWGC	1 cut(s)	133
Tsp45I	GTSAC	1 cut(s)	150
TspDTI	ATGAA	6 cut(s)	461, 788, 909, 993, 1055, 1476
TspRI	CASTG	2 cut(s)	312, 1027
Tth111I	GACNNNGTC	1 cut(s)	326
Van91I	CCANNNNNTGG	1 cut(s)	675
XapI	RAATTY	2 cut(s)	679, 1195
XceI	RCATGY	2 cut(s)	884, 1126
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1258
XmiI	GTMKAC	1 cut(s)	321
XmnI	GAANNNNTTC	1 cut(s)	779
XspI	CTAG	1 cut(s)	1296
ZraI	GACGTC	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.