Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8357507.1

Orthogroup ID

OG0000711

Physical Location & Seq

Genomic Coordinates Forward (+)

249 .. 992

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8357507.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atggtggaaggaggagcacacccctctagtaagacagaattcacagaatgctggaagacgacatggcggacgccttacattatgcgcctcgcgctctctgccggcattggaggccttctttttggatatgacacaggtgtcatttctggggcgctgctatacattcgtgaggactttgacgaagttgacaagaaaacatggctgcaagaaaccattgtgagtatggcagttgcgggcgctatcattggtgctgcaattggaggatggatgaacgatgccctcggccgcaagaaatcaatactaatagcagatgtggtgttctttgtgggtgcaatagttatggcagtggctccaactccttgggtgatcatcattggaagaatcatagttggtttgggagttggaatggcttccatgaccgcacccctttacatttcagaagcctctcctcatagaatcagaggagctcttgttagtacaaatggtcttctcatcacaggaggtcagtttttgtcatacctcatcaatctggcattcaccaaggctcctggaacatggcgttggatgcttggagttgccggtctaccagctgtcgttcagtttgttttgatgttgtcactccctgagtctccaagatggctctaccgagatgtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

218

Amino Acids

23.5

Weight (kDa)

8.73

Isoelectric Point (pI)

31.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35740 AT4G16480 AT4G16480 AT4G16480
fragaria_vesca	FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00760
malus_domestica	MD05G1108700.v1.1 MD05G1359700.v1.1 MD05G1359900.v1.1 MD10G1335300.v1.1 MD10G1335500.v1.1
prunus_persica	Prupe.4G008300_v2.0.a1 Prupe.4G008300_v2.0.a1 Prupe.4G008400_v2.0.a1
pyrus_communis	pycom05g32480 pycom05g32490 pycom10g28510
rosa_chinensis	RchiOBHm_Chr1g0370501 RchiOBHm_Chr4g0424641 RchiOBHm_Chr5g0000981 RchiOBHm_Chr5g0001001 RchiOBHm_Chr7g0190531
rosa_laevigata	RLG00000004519 RLG00000030911 RLG00000030912
rosa_multiflora	Rmu_co8357507.1_g000001 Rmu_co8503263.1_g000001 Rmu_sc0000255.1_g000023 Rmu_sc0000255.1_g000024 Rmu_sc0002558.1_g000005 Rmu_sc0007329.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075280 Rroxscaffold_1G00075290 Rroxscaffold_3G00264530
rosa_rugosa	Rorug04G0198700 Rorug04G0388100 Rorug04G0388200 Rorug04G0388300 Rorug04G0388400 Rorug04G0388500 Rorug04G0388600 Rorug04G0388700 Rorug04G0388800
rosa_samantha	Rh1AG366200 Rh1BG329000 Rh1CG342600 Rh1DG359300 Rh1DG360000 Rh4AG255600 Rh4BG261000 Rh4CG272100 Rh4DG255600 Rh5AG007800 Rh5AG007900 Rh5BG010000 Rh5BG010100 Rh5CG008500 Rh5CG008600 Rh5DG008500 Rh5DG008600
rosa_wichuraiana	Rw1G032250 Rw5G000810 Rw5G000820 Rw7G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	137
AccI	GTMKAC	1 cut(s)	583
AccII	CGCG	1 cut(s)	92
AciI	CCGC	4 cut(s)	67, 233, 286, 420
AcoI	YGGCCR	1 cut(s)	283
AcsI	RAATTY	1 cut(s)	38
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	1 cut(s)	478
AjnI	CCWGG	1 cut(s)	547
AjuI	GAANNNNNNNTTGG	2 cut(s)	544, 576
AluBI	AGCT	2 cut(s)	467, 590
AluI	AGCT	2 cut(s)	467, 590
Alw21I	GWGCWC	2 cut(s)	19, 469
Alw26I	GTCTC	1 cut(s)	633
AoxI	GGCC	2 cut(s)	112, 283
ApeKI	GCWGC	3 cut(s)	154, 202, 251
ApoI	RAATTY	1 cut(s)	38
Asp700I	GAANNNNTTC	1 cut(s)	409
AspLEI	GCGC	4 cut(s)	87, 94, 154, 239
AsuHPI	GGTGA	2 cut(s)	376, 529
BanII	GRGCYC	1 cut(s)	469
BbsI	GAAGAC	2 cut(s)	62, 479
Bbv12I	GWGCWC	2 cut(s)	19, 469
BbvI	GCAGC	3 cut(s)	141, 189, 238
BccI	CCATC	2 cut(s)	258, 630
BciT130I	CCWGG	1 cut(s)	549
BclI	TGATCA	1 cut(s)	366
BcoDI	GTCTC	1 cut(s)	633
BfaI	CTAG	1 cut(s)	27
BfoI	RGCGCY	2 cut(s)	155, 240
BisI	GCNGC	4 cut(s)	155, 203, 252, 286
BlsI	GCNGC	4 cut(s)	156, 204, 253, 287
Bme1390I	CCNGG	1 cut(s)	549
BmiI	GGNNCC	2 cut(s)	351, 546
BmrFI	CCNGG	1 cut(s)	549
BmsI	GCATC	2 cut(s)	265, 555
BpiI	GAAGAC	2 cut(s)	62, 479
BsaHI	GRCGYC	1 cut(s)	71
BsaJI	CCNNGG	3 cut(s)	280, 359, 540
BsaXI	ACNNNNNCTCC	4 cut(s)	456, 486, 529, 559
Bse118I	RCCGGY	2 cut(s)	101, 578
BseBI	CCWGG	1 cut(s)	549
BseDI	CCNNGG	3 cut(s)	280, 359, 540
BseGI	GGATG	3 cut(s)	269, 273, 570
BseMII	CTCAG	1 cut(s)	615
BseRI	GAGGAG	3 cut(s)	27, 438, 477
BseX3I	CGGCCG	1 cut(s)	283
BseXI	GCAGC	3 cut(s)	141, 189, 238
Bsh1236I	CGCG	1 cut(s)	92
Bsh1285I	CGRYCG	1 cut(s)	286
BshFI	GGCC	2 cut(s)	114, 285
BsiEI	CGRYCG	1 cut(s)	286
BsiHKAI	GWGCWC	2 cut(s)	19, 469
BsiSI	CCGG	2 cut(s)	102, 579
BsmAI	GTCTC	1 cut(s)	633
BsmI	GAATGC	2 cut(s)	53, 533
BsnI	GGCC	2 cut(s)	114, 285
Bsp1286I	GDGCHC	2 cut(s)	19, 469
Bsp143I	GATC	1 cut(s)	366
BspACI	CCGC	4 cut(s)	67, 233, 286, 420
BspANI	GGCC	2 cut(s)	114, 285
BspCNI	CTCAG	1 cut(s)	616
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	2 cut(s)	351, 546
BsrFI	RCCGGY	2 cut(s)	101, 578
BssAI	RCCGGY	2 cut(s)	101, 578
BssECI	CCNNGG	3 cut(s)	280, 359, 540
BssMI	GATC	1 cut(s)	366
BssNI	GRCGYC	1 cut(s)	71
BssT1I	CCWWGG	2 cut(s)	359, 540
Bst2UI	CCWGG	1 cut(s)	549
BstACI	GRCGYC	1 cut(s)	71
BstC8I	GCNNGC	2 cut(s)	103, 235
BstDEI	CTNAG	1 cut(s)	624
BstF5I	GGATG	3 cut(s)	269, 273, 570
BstFNI	CGCG	1 cut(s)	92
BstH2I	RGCGCY	2 cut(s)	155, 240
BstHHI	GCGC	4 cut(s)	87, 94, 154, 239
BstKTI	GATC	1 cut(s)	369
BstMAI	GTCTC	1 cut(s)	633
BstMBI	GATC	1 cut(s)	366
BstMCI	CGRYCG	1 cut(s)	286
BstMWI	GCNNNNNNNGC	4 cut(s)	91, 98, 111, 565
BstNI	CCWGG	1 cut(s)	549
BstSCI	CCNGG	1 cut(s)	547
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	3 cut(s)	141, 189, 238
BstV2I	GAAGAC	2 cut(s)	62, 479
BstXI	CCANNNNNNTGG	1 cut(s)	360
BstZI	CGGCCG	1 cut(s)	283
BsuRI	GGCC	2 cut(s)	114, 285
BtsCI	GGATG	3 cut(s)	269, 273, 570
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	1 cut(s)	351
Cac8I	GCNNGC	2 cut(s)	103, 235
CfoI	GCGC	4 cut(s)	87, 94, 154, 239
Cfr10I	RCCGGY	2 cut(s)	101, 578
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	477
CviAII	CATG	4 cut(s)	63, 198, 415, 555
CviQI	GTAC	1 cut(s)	477
DdeI	CTNAG	1 cut(s)	624
DpnI	GATC	1 cut(s)	368
DpnII	GATC	1 cut(s)	366
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
EaeI	YGGCCR	1 cut(s)	283
EagI	CGGCCG	1 cut(s)	283
EciI	GGCGGA	1 cut(s)	82
Ecl136II	GAGCTC	1 cut(s)	467
EclXI	CGGCCG	1 cut(s)	283
Eco130I	CCWWGG	2 cut(s)	359, 540
Eco147I	AGGCCT	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	469
Eco52I	CGGCCG	1 cut(s)	283
Eco53kI	GAGCTC	1 cut(s)	467
EcoICRI	GAGCTC	1 cut(s)	467
EcoRI	GAATTC	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	547
EcoT14I	CCWWGG	2 cut(s)	359, 540
EcoT38I	GRGCYC	1 cut(s)	469
ErhI	CCWWGG	2 cut(s)	359, 540
FaeI	CATG	4 cut(s)	66, 201, 418, 558
FatI	CATG	4 cut(s)	62, 197, 414, 554
FauI	CCCGC	1 cut(s)	226
FbaI	TGATCA	1 cut(s)	366
FblI	GTMKAC	1 cut(s)	583
Fnu4HI	GCNGC	4 cut(s)	155, 203, 252, 286
FokI	GGATG	3 cut(s)	276, 280, 577
FriOI	GRGCYC	1 cut(s)	469
Fsp4HI	GCNGC	4 cut(s)	155, 203, 252, 286
FspBI	CTAG	1 cut(s)	27
GlaI	GCGC	4 cut(s)	86, 93, 153, 238
GluI	GCNGC	4 cut(s)	155, 203, 252, 286
HaeII	RGCGCY	2 cut(s)	155, 240
HaeIII	GGCC	2 cut(s)	114, 285
HapII	CCGG	2 cut(s)	102, 579
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	4 cut(s)	87, 94, 154, 239
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	4 cut(s)	66, 201, 418, 558
Hin6I	GCGC	4 cut(s)	85, 92, 152, 237
HinP1I	GCGC	4 cut(s)	85, 92, 152, 237
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	3 cut(s)	381, 456, 626
HpaII	CCGG	2 cut(s)	102, 579
HphI	GGTGA	2 cut(s)	376, 529
Hpy166II	GTNNAC	2 cut(s)	187, 584
Hpy188I	TCNGA	2 cut(s)	439, 461
Hpy188III	TCNNGA	1 cut(s)	167
Hpy8I	GTNNAC	2 cut(s)	187, 584
HpyAV	CCTTC	1 cut(s)	125
HpyCH4V	TGCA	3 cut(s)	205, 254, 332
HpyF10VI	GCNNNNNNNGC	4 cut(s)	91, 98, 111, 565
HpyF3I	CTNAG	1 cut(s)	624
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	4 cut(s)	66, 201, 418, 558
HspAI	GCGC	4 cut(s)	85, 92, 152, 237
KroI	GCCGGC	1 cut(s)	101
KroNI	GCCGGC	1 cut(s)	103
Ksp22I	TGATCA	1 cut(s)	366
Kzo9I	GATC	1 cut(s)	366
LmnI	GCTCC	4 cut(s)	14, 355, 464, 550
Lsp1109I	GCAGC	3 cut(s)	141, 189, 238
LweI	GCATC	2 cut(s)	265, 555
MaeI	CTAG	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	615
MalI	GATC	1 cut(s)	368
MboI	GATC	1 cut(s)	366
MboII	GAAGA	3 cut(s)	67, 390, 479
MfeI	CAATTG	1 cut(s)	255
MhlI	GDGCHC	2 cut(s)	19, 469
MluCI	AATT	2 cut(s)	38, 255
MlyI	GAGTC	1 cut(s)	635
MmeI	TCCRAC	3 cut(s)	377, 382, 542
MroNI	GCCGGC	1 cut(s)	101
MroXI	GAANNNNTTC	1 cut(s)	409
MspA1I	CMGCKG	1 cut(s)	590
MspI	CCGG	2 cut(s)	102, 579
MspR9I	CCNGG	1 cut(s)	549
MunI	CAATTG	1 cut(s)	255
Mva1269I	GAATGC	2 cut(s)	53, 533
MvaI	CCWGG	1 cut(s)	549
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	4 cut(s)	91, 98, 111, 565
NaeI	GCCGGC	1 cut(s)	103
NdeII	GATC	1 cut(s)	366
NgoMIV	GCCGGC	1 cut(s)	101
NlaIII	CATG	4 cut(s)	66, 201, 418, 558
NlaIV	GGNNCC	2 cut(s)	351, 546
NmeAIII	GCCGAG	1 cut(s)	261
NmuCI	GTSAC	1 cut(s)	615
PceI	AGGCCT	1 cut(s)	114
PctI	GAATGC	2 cut(s)	53, 533
PdiI	GCCGGC	1 cut(s)	103
PdmI	GAANNNNTTC	1 cut(s)	409
PfeI	GAWTC	2 cut(s)	381, 456
PfoI	TCCNGGA	1 cut(s)	547
PkrI	GCNGC	4 cut(s)	156, 204, 253, 287
PleI	GAGTC	1 cut(s)	634
PpsI	GAGTC	1 cut(s)	634
Psp124BI	GAGCTC	1 cut(s)	469
Psp6I	CCWGG	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	547
PspN4I	GGNNCC	2 cut(s)	351, 546
PvuII	CAGCTG	1 cut(s)	590
RsaI	GTAC	1 cut(s)	478
RsaNI	GTAC	1 cut(s)	477
SacI	GAGCTC	1 cut(s)	469
SatI	GCNGC	4 cut(s)	155, 203, 252, 286
Sau3AI	GATC	1 cut(s)	366
SchI	GAGTC	1 cut(s)	635
ScrFI	CCNGG	1 cut(s)	549
SduI	GDGCHC	2 cut(s)	19, 469
SetI	ASST	5 cut(s)	139, 469, 505, 522, 592
SfaNI	GCATC	2 cut(s)	265, 555
Sse9I	AATT	2 cut(s)	38, 255
SseBI	AGGCCT	1 cut(s)	114
SsiI	CCGC	4 cut(s)	67, 233, 286, 420
SspMI	CTAG	1 cut(s)	27
SstI	GAGCTC	1 cut(s)	469
StuI	AGGCCT	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	547
StyI	CCWWGG	2 cut(s)	359, 540
TasI	AATT	2 cut(s)	38, 255
TatI	WGTACW	1 cut(s)	476
TauI	GCSGC	1 cut(s)	288
TfiI	GAWTC	2 cut(s)	381, 456
TscAI	CASTG	1 cut(s)	351
TseFI	GTSAC	1 cut(s)	615
TseI	GCWGC	3 cut(s)	154, 202, 251
Tsp45I	GTSAC	1 cut(s)	615
TspDTI	ATGAA	1 cut(s)	284
TspRI	CASTG	1 cut(s)	351
XapI	RAATTY	1 cut(s)	38
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	583
XmnI	GAANNNNTTC	1 cut(s)	409
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.