Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000711

Physical Location & Seq

Genomic Coordinates Reverse (-)

41244182 .. 41245171

Gene Structure 990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1335300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGGGGTAAGGCTAGCCGACATTCACCTCTCCCAGACCCTGCGTAAAGCGGGAGCCTTGTGCACTGGGTACGACCTTTTTTTTTTTTTTTTTTTTTGTACATCAGGAGCATCTTACTGCCAAAAAAATACATGTTTGTATGATTTAGGTTTGCTGCATGCGTCTGCATATATATTATTTATCAAAACTACGTGGCCATCTTATATAATTAACAGATGGAATGCATATAGAAATGAAACATATAAACCAGTAAATGCAGTAGGTATAGTGATGCAATGGATAAAAAAAGAAGAAAATGGTCAAGGAGGAGCCCCACCTTCTAGTAAAACTGAGTTCACAGAGTGTTGGAGGACAACATGGAGGACGCCGGACATTATGCACCTCGCGCTCTCTGCTGTCATCGGAGGCCTCCTTTTTGGATATGATACAGGAGACCATAGTGAGCATGGTAGTTGCTGCGCCATCATTGAAGCTGCTGTTGGTGAATGGATGAACGTCACACTTGGCGGGAAAAAGTCAATCCTAATCACGGACGTGGTGTTCTTCGTTAGGGAAATAGTTATGGGCGCAGCTCCAGCTAAGTGGATGATCGCAATTGGGAGAACTGTAGTTGGTTTGGGAGTTGGAATGGCTTCTATGACCGCACCCCTCTACATATTAGAGTCAGGGGCTTCTCCTCAGAAAATCAGAGGAGCTCTTGTTAGCAGCAATGGTATGTTATGTACGAGAGGACAATTCTTGTCAGACCTTATCAGTGTCACCTTCACCAAGCTCAAGGAACCTGGCGTTGGATGCTTGGAGTCGCCGGAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

272

Amino Acids

29.63

Weight (kDa)

8.04

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	159 - 258	5.4e-19	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35740 AT4G16480 AT4G16480 AT4G16480
fragaria_vesca	FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00760
malus_domestica	MD05G1108700.v1.1 MD05G1359700.v1.1 MD05G1359900.v1.1 MD10G1335300.v1.1 MD10G1335500.v1.1
prunus_persica	Prupe.4G008300_v2.0.a1 Prupe.4G008300_v2.0.a1 Prupe.4G008400_v2.0.a1
pyrus_communis	pycom05g32480 pycom05g32490 pycom10g28510
rosa_chinensis	RchiOBHm_Chr1g0370501 RchiOBHm_Chr4g0424641 RchiOBHm_Chr5g0000981 RchiOBHm_Chr5g0001001 RchiOBHm_Chr7g0190531
rosa_laevigata	RLG00000004519 RLG00000030911 RLG00000030912
rosa_multiflora	Rmu_co8357507.1_g000001 Rmu_co8503263.1_g000001 Rmu_sc0000255.1_g000023 Rmu_sc0000255.1_g000024 Rmu_sc0002558.1_g000005 Rmu_sc0007329.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075280 Rroxscaffold_1G00075290 Rroxscaffold_3G00264530
rosa_rugosa	Rorug04G0198700 Rorug04G0388100 Rorug04G0388200 Rorug04G0388300 Rorug04G0388400 Rorug04G0388500 Rorug04G0388600 Rorug04G0388700 Rorug04G0388800
rosa_samantha	Rh1AG366200 Rh1BG329000 Rh1CG342600 Rh1DG359300 Rh1DG360000 Rh4AG255600 Rh4BG261000 Rh4CG272100 Rh4DG255600 Rh5AG007800 Rh5AG007900 Rh5BG010000 Rh5BG010100 Rh5CG008500 Rh5CG008600 Rh5DG008500 Rh5DG008600
rosa_wichuraiana	Rw1G032250 Rw5G000810 Rw5G000820 Rw7G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	386
AciI	CCGC	3 cut(s)	50, 507, 642
AcoI	YGGCCR	1 cut(s)	194
AcyI	GRCGYC	1 cut(s)	365
AdeI	CACNNNGTG	1 cut(s)	342
AfaI	GTAC	3 cut(s)	71, 100, 724
AfiI	CCNNNNNNNGG	2 cut(s)	529, 788
AflIII	ACRYGT	1 cut(s)	131
AgsI	TTSAA	1 cut(s)	470
AjiI	CACGTC	1 cut(s)	535
AjnI	CCWGG	1 cut(s)	781
AjuI	GAANNNNNNNTTGG	4 cut(s)	462, 494, 771, 803
AleI	CACNNNNGTG	1 cut(s)	533
AloI	GAACNNNNNNTCC	2 cut(s)	524, 556
AluBI	AGCT	5 cut(s)	473, 572, 578, 695, 772
AluI	AGCT	5 cut(s)	473, 572, 578, 695, 772
Alw21I	GWGCWC	2 cut(s)	65, 697
Alw26I	GTCTC	1 cut(s)	426
Alw44I	GTGCAC	1 cut(s)	61
AlwNI	CAGNNNCTG	1 cut(s)	40
AoxI	GGCC	2 cut(s)	194, 406
ApaLI	GTGCAC	1 cut(s)	61
ApeKI	GCWGC	5 cut(s)	154, 456, 473, 569, 705
Asp700I	GAANNNNTTC	1 cut(s)	631
AspLEI	GCGC	3 cut(s)	388, 461, 569
AsuHPI	GGTGA	4 cut(s)	17, 494, 751, 757
AsuNHI	GCTAGC	1 cut(s)	13
BaeGI	GKGCMC	1 cut(s)	65
BalI	TGGCCA	1 cut(s)	196
BanII	GRGCYC	2 cut(s)	313, 697
Bbv12I	GWGCWC	2 cut(s)	65, 697
BbvI	GCAGC	5 cut(s)	141, 443, 460, 581, 717
BccI	CCATC	3 cut(s)	205, 210, 470
BciT130I	CCWGG	1 cut(s)	783
BcoDI	GTCTC	1 cut(s)	426
BfaI	CTAG	3 cut(s)	14, 321, 814
BfmI	CTRYAG	1 cut(s)	606
BisI	GCNGC	5 cut(s)	155, 457, 474, 570, 706
BlsI	GCNGC	5 cut(s)	156, 458, 475, 571, 707
Bme1390I	CCNGG	1 cut(s)	783
BmgBI	CACGTC	1 cut(s)	535
BmiI	GGNNCC	3 cut(s)	55, 310, 780
BmrFI	CCNGG	1 cut(s)	783
BmrI	ACTGGG	1 cut(s)	75
BmsI	GCATC	3 cut(s)	119, 261, 782
BmtI	GCTAGC	1 cut(s)	17
BmuI	ACTGGG	1 cut(s)	75
BpmI	CTGGAG	1 cut(s)	558
BpuEI	CTTGAG	1 cut(s)	758
BsaAI	YACGTR	1 cut(s)	192
BsaHI	GRCGYC	1 cut(s)	365
BsaI	GGTCTC	1 cut(s)	426
BsaXI	ACNNNNNCTCC	2 cut(s)	684, 714
Bsc4I	CCNNNNNNNGG	2 cut(s)	529, 788
Bse1I	ACTGG	2 cut(s)	70, 248
Bse3DI	GCAATG	2 cut(s)	281, 715
BseBI	CCWGG	1 cut(s)	783
BseGI	GGATG	3 cut(s)	495, 591, 797
BseLI	CCNNNNNNNGG	2 cut(s)	529, 788
BseMI	GCAATG	2 cut(s)	281, 715
BseMII	CTCAG	2 cut(s)	321, 692
BseNI	ACTGG	2 cut(s)	70, 248
BseRI	GAGGAG	3 cut(s)	321, 666, 705
BseSI	GKGCMC	1 cut(s)	65
BseXI	GCAGC	5 cut(s)	141, 443, 460, 581, 717
Bsh1236I	CGCG	1 cut(s)	386
BshFI	GGCC	2 cut(s)	196, 408
BsiHKAI	GWGCWC	2 cut(s)	65, 697
BsiSI	CCGG	2 cut(s)	368, 806
BslI	CCNNNNNNNGG	2 cut(s)	529, 788
BsmAI	GTCTC	1 cut(s)	426
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	2 cut(s)	196, 408
Bso31I	GGTCTC	1 cut(s)	426
Bsp1286I	GDGCHC	3 cut(s)	65, 313, 697
Bsp1407I	TGTACA	1 cut(s)	98
Bsp143I	GATC	1 cut(s)	588
BspACI	CCGC	3 cut(s)	50, 507, 642
BspANI	GGCC	2 cut(s)	196, 408
BspCNI	CTCAG	2 cut(s)	322, 691
BspFNI	CGCG	1 cut(s)	386
BspLI	GGNNCC	3 cut(s)	55, 310, 780
BspOI	GCTAGC	1 cut(s)	17
BspTNI	GGTCTC	1 cut(s)	426
BsrDI	GCAATG	2 cut(s)	281, 715
BsrGI	TGTACA	1 cut(s)	98
BsrI	ACTGG	2 cut(s)	70, 248
BssMI	GATC	1 cut(s)	588
BssNI	GRCGYC	1 cut(s)	365
Bst2UI	CCWGG	1 cut(s)	783
Bst4CI	ACNGT	1 cut(s)	607
BstACI	GRCGYC	1 cut(s)	365
BstAUI	TGTACA	1 cut(s)	98
BstBAI	YACGTR	1 cut(s)	192
BstC8I	GCNNGC	2 cut(s)	15, 159
BstDEI	CTNAG	3 cut(s)	330, 579, 678
BstF5I	GGATG	3 cut(s)	495, 591, 797
BstFNI	CGCG	1 cut(s)	386
BstHHI	GCGC	3 cut(s)	388, 461, 569
BstKTI	GATC	1 cut(s)	591
BstMAI	GTCTC	1 cut(s)	426
BstMBI	GATC	1 cut(s)	588
BstMWI	GCNNNNNNNGC	4 cut(s)	385, 392, 575, 792
BstNI	CCWGG	1 cut(s)	783
BstNSI	RCATGY	2 cut(s)	135, 161
BstSCI	CCNGG	1 cut(s)	781
BstSFI	CTRYAG	1 cut(s)	606
BstSLI	GKGCMC	1 cut(s)	65
BstUI	CGCG	1 cut(s)	386
BstV1I	GCAGC	5 cut(s)	141, 443, 460, 581, 717
BstXI	CCANNNNNNTGG	1 cut(s)	582
BsuRI	GGCC	2 cut(s)	196, 408
BtrI	CACGTC	1 cut(s)	535
BtsCI	GGATG	3 cut(s)	495, 591, 797
BtsIMutI	CAGTG	2 cut(s)	63, 760
Cac8I	GCNNGC	2 cut(s)	15, 159
CaiI	CAGNNNCTG	1 cut(s)	40
CfoI	GCGC	3 cut(s)	388, 461, 569
CseI	GACGC	2 cut(s)	150, 373
Csp6I	GTAC	3 cut(s)	70, 99, 723
CviAII	CATG	4 cut(s)	132, 158, 357, 446
CviQI	GTAC	3 cut(s)	70, 99, 723
DdeI	CTNAG	3 cut(s)	330, 579, 678
DpnI	GATC	1 cut(s)	590
DpnII	GATC	1 cut(s)	588
DraIII	CACNNNGTG	1 cut(s)	342
EaeI	YGGCCR	1 cut(s)	194
Ecl136II	GAGCTC	1 cut(s)	695
Eco147I	AGGCCT	1 cut(s)	408
Eco24I	GRGCYC	2 cut(s)	313, 697
Eco31I	GGTCTC	1 cut(s)	426
Eco53kI	GAGCTC	1 cut(s)	695
EcoICRI	GAGCTC	1 cut(s)	695
EcoRII	CCWGG	1 cut(s)	781
EcoT22I	ATGCAT	1 cut(s)	226
EcoT38I	GRGCYC	2 cut(s)	313, 697
FaeI	CATG	4 cut(s)	135, 161, 360, 449
FatI	CATG	4 cut(s)	131, 157, 356, 445
FauI	CCCGC	2 cut(s)	43, 500
Fnu4HI	GCNGC	5 cut(s)	155, 457, 474, 570, 706
FokI	GGATG	3 cut(s)	502, 598, 804
FriOI	GRGCYC	2 cut(s)	313, 697
Fsp4HI	GCNGC	5 cut(s)	155, 457, 474, 570, 706
FspBI	CTAG	3 cut(s)	14, 321, 814
GlaI	GCGC	3 cut(s)	387, 460, 568
GluI	GCNGC	5 cut(s)	155, 457, 474, 570, 706
GsuI	CTGGAG	1 cut(s)	558
HaeIII	GGCC	2 cut(s)	196, 408
HapII	CCGG	2 cut(s)	368, 806
HgaI	GACGC	2 cut(s)	150, 373
HhaI	GCGC	3 cut(s)	388, 461, 569
Hin1I	GRCGYC	1 cut(s)	365
Hin1II	CATG	4 cut(s)	135, 161, 360, 449
Hin6I	GCGC	3 cut(s)	386, 459, 567
HinP1I	GCGC	3 cut(s)	386, 459, 567
HinfI	GANTC	2 cut(s)	662, 800
HpaII	CCGG	2 cut(s)	368, 806
HphI	GGTGA	4 cut(s)	17, 494, 751, 757
Hpy166II	GTNNAC	2 cut(s)	63, 336
Hpy188I	TCNGA	4 cut(s)	404, 681, 689, 745
Hpy188III	TCNNGA	1 cut(s)	105
Hpy8I	GTNNAC	2 cut(s)	63, 336
HpyAV	CCTTC	2 cut(s)	327, 772
HpyCH4III	ACNGT	1 cut(s)	607
HpyCH4IV	ACGT	3 cut(s)	191, 495, 534
HpyCH4V	TGCA	7 cut(s)	63, 157, 167, 224, 257, 274, 379
HpyF10VI	GCNNNNNNNGC	4 cut(s)	385, 392, 575, 792
HpyF3I	CTNAG	3 cut(s)	330, 579, 678
HpySE526I	ACGT	3 cut(s)	191, 495, 534
Hsp92I	GRCGYC	1 cut(s)	365
Hsp92II	CATG	4 cut(s)	135, 161, 360, 449
HspAI	GCGC	3 cut(s)	386, 459, 567
Kzo9I	GATC	1 cut(s)	588
LmnI	GCTCC	5 cut(s)	53, 107, 308, 577, 692
Lsp1109I	GCAGC	5 cut(s)	141, 443, 460, 581, 717
LweI	GCATC	3 cut(s)	119, 261, 782
MaeI	CTAG	3 cut(s)	14, 321, 814
MaeII	ACGT	3 cut(s)	191, 495, 534
MaeIII	GTNAC	2 cut(s)	496, 757
MalI	GATC	1 cut(s)	590
MboI	GATC	1 cut(s)	588
MboII	GAAGA	2 cut(s)	302, 535
MfeI	CAATTG	1 cut(s)	594
MhlI	GDGCHC	3 cut(s)	65, 313, 697
MlsI	TGGCCA	1 cut(s)	196
MluCI	AATT	3 cut(s)	207, 594, 734
MluNI	TGGCCA	1 cut(s)	196
MlyI	GAGTC	2 cut(s)	671, 809
MmeI	TCCRAC	3 cut(s)	326, 604, 769
Mox20I	TGGCCA	1 cut(s)	196
Mph1103I	ATGCAT	1 cut(s)	226
MroXI	GAANNNNTTC	1 cut(s)	631
MscI	TGGCCA	1 cut(s)	196
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	533
Msp20I	TGGCCA	1 cut(s)	196
MspI	CCGG	2 cut(s)	368, 806
MspR9I	CCNGG	1 cut(s)	783
MunI	CAATTG	1 cut(s)	594
Mva1269I	GAATGC	1 cut(s)	226
MvaI	CCWGG	1 cut(s)	783
MvnI	CGCG	1 cut(s)	386
MwoI	GCNNNNNNNGC	4 cut(s)	385, 392, 575, 792
NdeII	GATC	1 cut(s)	588
NheI	GCTAGC	1 cut(s)	13
NlaIII	CATG	4 cut(s)	135, 161, 360, 449
NlaIV	GGNNCC	3 cut(s)	55, 310, 780
NmuCI	GTSAC	2 cut(s)	496, 757
NsiI	ATGCAT	1 cut(s)	226
NspI	RCATGY	2 cut(s)	135, 161
OliI	CACNNNNGTG	1 cut(s)	533
PaeI	GCATGC	1 cut(s)	161
PceI	AGGCCT	1 cut(s)	408
PciI	ACATGT	1 cut(s)	131
PctI	GAATGC	1 cut(s)	226
PdmI	GAANNNNTTC	1 cut(s)	631
PkrI	GCNGC	5 cut(s)	156, 458, 475, 571, 707
PleI	GAGTC	2 cut(s)	670, 808
PpsI	GAGTC	2 cut(s)	670, 808
Ppu21I	YACGTR	1 cut(s)	192
PscI	ACATGT	1 cut(s)	131
Psp124BI	GAGCTC	1 cut(s)	697
Psp6I	CCWGG	1 cut(s)	781
PspGI	CCWGG	1 cut(s)	781
PspN4I	GGNNCC	3 cut(s)	55, 310, 780
PstNI	CAGNNNCTG	1 cut(s)	40
RsaI	GTAC	3 cut(s)	71, 100, 724
RsaNI	GTAC	3 cut(s)	70, 99, 723
RseI	CAYNNNNRTG	1 cut(s)	533
SacI	GAGCTC	1 cut(s)	697
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	5 cut(s)	155, 457, 474, 570, 706
Sau3AI	GATC	1 cut(s)	588
SchI	GAGTC	2 cut(s)	671, 809
ScrFI	CCNGG	1 cut(s)	783
SduI	GDGCHC	3 cut(s)	65, 313, 697
SfaNI	GCATC	3 cut(s)	119, 261, 782
SfcI	CTRYAG	1 cut(s)	606
SmiMI	CAYNNNNRTG	1 cut(s)	533
SmlI	CTYRAG	1 cut(s)	773
SmoI	CTYRAG	1 cut(s)	773
SphI	GCATGC	1 cut(s)	161
Sse9I	AATT	3 cut(s)	207, 594, 734
SseBI	AGGCCT	1 cut(s)	408
SsiI	CCGC	3 cut(s)	50, 507, 642
SspMI	CTAG	3 cut(s)	14, 321, 814
SstI	GAGCTC	1 cut(s)	697
StuI	AGGCCT	1 cut(s)	408
StyD4I	CCNGG	1 cut(s)	781
TaaI	ACNGT	1 cut(s)	607
TaiI	ACGT	3 cut(s)	194, 498, 537
TasI	AATT	3 cut(s)	207, 594, 734
TatI	WGTACW	1 cut(s)	98
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	2 cut(s)	70, 760
TseFI	GTSAC	2 cut(s)	496, 757
TseI	GCWGC	5 cut(s)	154, 456, 473, 569, 705
Tsp45I	GTSAC	2 cut(s)	496, 757
TspDTI	ATGAA	2 cut(s)	249, 506
TspGWI	ACGGA	1 cut(s)	545
TspRI	CASTG	2 cut(s)	70, 760
VneI	GTGCAC	1 cut(s)	61
XceI	RCATGY	2 cut(s)	135, 161
XcmI	CCANNNNNNNNNTGG	1 cut(s)	443
XmnI	GAANNNNTTC	1 cut(s)	631
XspI	CTAG	3 cut(s)	14, 321, 814
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.