Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000711

Physical Location & Seq

Genomic Coordinates Forward (+)

60140751 .. 60142696

Gene Structure 1946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG366200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGGTATGTCTTCTATGACCTCACCACTATACATCTCAGAAGCTTCTCCTGCTAGAATCCGAGGTGCTCTTGTTAGTACAAACGGTTTTCTAATTACTGGAGGTCAATTTTTGTCATACCTCATCAATCTTGCCTTCACCAAGGCTCCTGGAACCTGGCGTTGGATGCCTGGAGTAGCCGGAGTTCCTGCTGTGGTTCAGTTTGGATTGATGTGGTCATTCCCAGAGTCTCCAAGGTGGCTCTACAGAAAGAATAAGGTAGATGAAGCCAGGGCTATCTTAGAGAAAATTTATCCGGCGAATGAAGTTGAGGATGAAATGAAAGCATTGCACGAATCTGTTGAAATGGAAAAGGCTGAGGAAGGAGATGTTGGTGATGGCGTCATAGCAAAACTAAAGGGTGCATTCAGCAACCCTGTGGTCCGAAGAAGACTCTATGCAGGCATAACAGTCCAAGAAGCTGTTAAGCATTTGCAAGCAGAGAAAAAGGAAGCCAAAATTGAGAATGAGCCACAGAAGGAGAAGTTTGAAGTTCACCAAGGAGAAAATGACGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

185

Amino Acids

20.63

Weight (kDa)

5.74

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	1 - 152	1.8e-34	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35740 AT4G16480 AT4G16480 AT4G16480
fragaria_vesca	FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00760
malus_domestica	MD05G1108700.v1.1 MD05G1359700.v1.1 MD05G1359900.v1.1 MD10G1335300.v1.1 MD10G1335500.v1.1
prunus_persica	Prupe.4G008300_v2.0.a1 Prupe.4G008300_v2.0.a1 Prupe.4G008400_v2.0.a1
pyrus_communis	pycom05g32480 pycom05g32490 pycom10g28510
rosa_chinensis	RchiOBHm_Chr1g0370501 RchiOBHm_Chr4g0424641 RchiOBHm_Chr5g0000981 RchiOBHm_Chr5g0001001 RchiOBHm_Chr7g0190531
rosa_laevigata	RLG00000004519 RLG00000030911 RLG00000030912
rosa_multiflora	Rmu_co8357507.1_g000001 Rmu_co8503263.1_g000001 Rmu_sc0000255.1_g000023 Rmu_sc0000255.1_g000024 Rmu_sc0002558.1_g000005 Rmu_sc0007329.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075280 Rroxscaffold_1G00075290 Rroxscaffold_3G00264530
rosa_rugosa	Rorug04G0198700 Rorug04G0388100 Rorug04G0388200 Rorug04G0388300 Rorug04G0388400 Rorug04G0388500 Rorug04G0388600 Rorug04G0388700 Rorug04G0388800
rosa_samantha	Rh1AG366200 Rh1BG329000 Rh1CG342600 Rh1DG359300 Rh1DG360000 Rh4AG255600 Rh4BG261000 Rh4CG272100 Rh4DG255600 Rh5AG007800 Rh5AG007900 Rh5BG010000 Rh5BG010100 Rh5CG008500 Rh5CG008600 Rh5DG008500 Rh5DG008600
rosa_wichuraiana	Rw1G032250 Rw5G000810 Rw5G000820 Rw7G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	288
AcyI	GRCGYC	1 cut(s)	381
AfaI	GTAC	1 cut(s)	79
AfiI	CCNNNNNNNGG	1 cut(s)	162
AgsI	TTSAA	2 cut(s)	344, 530
AjnI	CCWGG	4 cut(s)	148, 155, 169, 269
AjuI	GAANNNNNNNTTGG	4 cut(s)	145, 177, 354, 386
AluBI	AGCT	2 cut(s)	44, 461
AluI	AGCT	2 cut(s)	44, 461
Alw21I	GWGCWC	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	234
ApoI	RAATTY	1 cut(s)	288
AspS9I	GGNCC	1 cut(s)	421
AsuHPI	GGTGA	4 cut(s)	15, 130, 386, 527
AvaII	GGWCC	1 cut(s)	421
BbsI	GAAGAC	2 cut(s)	3, 436
Bbv12I	GWGCWC	1 cut(s)	70
BbvCI	CCTCAGC	1 cut(s)	357
BccI	CCATC	1 cut(s)	371
BciT130I	CCWGG	4 cut(s)	150, 157, 171, 271
BcoDI	GTCTC	1 cut(s)	234
BfaI	CTAG	1 cut(s)	54
BfmI	CTRYAG	1 cut(s)	244
Bme1390I	CCNGG	4 cut(s)	150, 157, 171, 271
Bme18I	GGWCC	1 cut(s)	421
BmgT120I	GGNCC	1 cut(s)	421
BmiI	GGNNCC	2 cut(s)	147, 154
BmrFI	CCNGG	4 cut(s)	150, 157, 171, 271
BmsI	GCATC	1 cut(s)	156
BpiI	GAAGAC	2 cut(s)	3, 436
BpmI	CTGGAG	2 cut(s)	120, 192
Bpu10I	CCTNAGC	1 cut(s)	357
BsaHI	GRCGYC	1 cut(s)	381
BsaJI	CCNNGG	5 cut(s)	61, 141, 233, 270, 538
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
Bse1I	ACTGG	1 cut(s)	103
Bse3DI	GCAATG	1 cut(s)	326
BseBI	CCWGG	4 cut(s)	150, 157, 171, 271
BseDI	CCNNGG	5 cut(s)	61, 141, 233, 270, 538
BseGI	GGATG	2 cut(s)	171, 319
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseMI	GCAATG	1 cut(s)	326
BseMII	CTCAG	2 cut(s)	51, 348
BseNI	ACTGG	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	70
BsiSI	CCGG	2 cut(s)	180, 296
BslI	CCNNNNNNNGG	1 cut(s)	162
BsmAI	GTCTC	1 cut(s)	234
BsmI	GAATGC	1 cut(s)	404
Bsp1286I	GDGCHC	1 cut(s)	70
BspCNI	CTCAG	2 cut(s)	50, 349
BspLI	GGNNCC	2 cut(s)	147, 154
BsrDI	GCAATG	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	103
BssECI	CCNNGG	5 cut(s)	61, 141, 233, 270, 538
BssNI	GRCGYC	1 cut(s)	381
BssT1I	CCWWGG	3 cut(s)	141, 233, 538
Bst2UI	CCWGG	4 cut(s)	150, 157, 171, 271
Bst4CI	ACNGT	2 cut(s)	86, 451
BstACI	GRCGYC	1 cut(s)	381
BstC8I	GCNNGC	2 cut(s)	442, 477
BstDEI	CTNAG	3 cut(s)	37, 280, 357
BstF5I	GGATG	2 cut(s)	171, 319
BstMAI	GTCTC	1 cut(s)	234
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 166
BstNI	CCWGG	4 cut(s)	150, 157, 171, 271
BstSCI	CCNGG	4 cut(s)	148, 155, 169, 269
BstSFI	CTRYAG	1 cut(s)	244
BstV2I	GAAGAC	2 cut(s)	3, 436
BtsCI	GGATG	2 cut(s)	171, 319
Cac8I	GCNNGC	2 cut(s)	442, 477
Cfr13I	GGNCC	1 cut(s)	421
CseI	GACGC	1 cut(s)	370
Csp6I	GTAC	1 cut(s)	78
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	3 cut(s)	37, 280, 357
Eco130I	CCWWGG	3 cut(s)	141, 233, 538
Eco47I	GGWCC	1 cut(s)	421
EcoRII	CCWGG	4 cut(s)	148, 155, 169, 269
EcoT14I	CCWWGG	3 cut(s)	141, 233, 538
ErhI	CCWWGG	3 cut(s)	141, 233, 538
FaiI	YATR	7 cut(s)	8, 17, 31, 118, 386, 438, 446
FokI	GGATG	2 cut(s)	178, 326
FspBI	CTAG	1 cut(s)	54
GsuI	CTGGAG	2 cut(s)	120, 192
HapII	CCGG	2 cut(s)	180, 296
HgaI	GACGC	1 cut(s)	370
Hin1I	GRCGYC	1 cut(s)	381
HindIII	AAGCTT	1 cut(s)	42
HinfI	GANTC	4 cut(s)	57, 227, 335, 432
HpaII	CCGG	2 cut(s)	180, 296
HphI	GGTGA	4 cut(s)	15, 130, 386, 527
Hpy166II	GTNNAC	1 cut(s)	535
Hpy188I	TCNGA	3 cut(s)	40, 62, 425
Hpy8I	GTNNAC	1 cut(s)	535
HpyAV	CCTTC	3 cut(s)	145, 356, 511
HpyCH4III	ACNGT	2 cut(s)	86, 451
HpyCH4V	TGCA	4 cut(s)	331, 404, 440, 475
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 166
HpyF3I	CTNAG	3 cut(s)	37, 280, 357
Hsp92I	GRCGYC	1 cut(s)	381
LmnI	GCTCC	1 cut(s)	151
LweI	GCATC	1 cut(s)	156
MaeI	CTAG	1 cut(s)	54
MboII	GAAGA	3 cut(s)	3, 438, 441
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	4 cut(s)	93, 107, 288, 498
MlyI	GAGTC	2 cut(s)	236, 426
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	6 cut(s)	31, 56, 95, 131, 304, 352
MseI	TTAA	1 cut(s)	465
MspI	CCGG	2 cut(s)	180, 296
MspR9I	CCNGG	4 cut(s)	150, 157, 171, 271
Mva1269I	GAATGC	1 cut(s)	404
MvaI	CCWGG	4 cut(s)	150, 157, 171, 271
MwoI	GCNNNNNNNGC	2 cut(s)	50, 166
NlaIV	GGNNCC	2 cut(s)	147, 154
PctI	GAATGC	1 cut(s)	404
PfeI	GAWTC	2 cut(s)	57, 335
PfoI	TCCNGGA	1 cut(s)	148
PleI	GAGTC	2 cut(s)	235, 426
PpsI	GAGTC	2 cut(s)	235, 426
Psp6I	CCWGG	4 cut(s)	148, 155, 169, 269
PspGI	CCWGG	4 cut(s)	148, 155, 169, 269
PspN4I	GGNNCC	2 cut(s)	147, 154
PspPI	GGNCC	1 cut(s)	421
PsrI	GAACNNNNNNTAC	2 cut(s)	168, 200
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	465
Sau96I	GGNCC	1 cut(s)	421
SchI	GAGTC	2 cut(s)	236, 426
ScrFI	CCNGG	4 cut(s)	150, 157, 171, 271
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	9 cut(s)	23, 46, 67, 106, 123, 158, 239, 261, 463
SfaNI	GCATC	1 cut(s)	156
SfcI	CTRYAG	1 cut(s)	244
SinI	GGWCC	1 cut(s)	421
Sse9I	AATT	4 cut(s)	93, 107, 288, 498
SspMI	CTAG	1 cut(s)	54
StyD4I	CCNGG	4 cut(s)	148, 155, 169, 269
StyI	CCWWGG	3 cut(s)	141, 233, 538
TaaI	ACNGT	2 cut(s)	86, 451
TasI	AATT	4 cut(s)	93, 107, 288, 498
TatI	WGTACW	1 cut(s)	77
TfiI	GAWTC	2 cut(s)	57, 335
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TspDTI	ATGAA	4 cut(s)	279, 318, 330, 335
VpaK11BI	GGWCC	1 cut(s)	421
XapI	RAATTY	1 cut(s)	288
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.