Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007329.1

Orthogroup ID

OG0000711

Physical Location & Seq

Genomic Coordinates Forward (+)

30070 .. 30718

Gene Structure 649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007329.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atggtggaagggggagcacacccttctagtaagacagaattcacagaatgctggaagaccacatggctaacgccttacattatgcgccttgcgctctctgctggcattggaggcctcttttttggatatgacacagatgtggtgttcttcgtgggagcagtagttatggaagtggctcctgttccttgggtgatcatcattggaagaaaaagaatcatagttggtttgggagttggaatggcttccatgaccgcgcccctctacatttcagagacttctcctcatagaatcagaggagctcttgttagtacagacggtcttgtcatcacaggaggtcagtttttgtcatacctcatcaatctggtattggccaacaaggctcctggaacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

130

Amino Acids

13.89

Weight (kDa)

7.9

Isoelectric Point (pI)

30.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35740 AT4G16480 AT4G16480 AT4G16480
fragaria_vesca	FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00760
malus_domestica	MD05G1108700.v1.1 MD05G1359700.v1.1 MD05G1359900.v1.1 MD10G1335300.v1.1 MD10G1335500.v1.1
prunus_persica	Prupe.4G008300_v2.0.a1 Prupe.4G008300_v2.0.a1 Prupe.4G008400_v2.0.a1
pyrus_communis	pycom05g32480 pycom05g32490 pycom10g28510
rosa_chinensis	RchiOBHm_Chr1g0370501 RchiOBHm_Chr4g0424641 RchiOBHm_Chr5g0000981 RchiOBHm_Chr5g0001001 RchiOBHm_Chr7g0190531
rosa_laevigata	RLG00000004519 RLG00000030911 RLG00000030912
rosa_multiflora	Rmu_co8357507.1_g000001 Rmu_co8503263.1_g000001 Rmu_sc0000255.1_g000023 Rmu_sc0000255.1_g000024 Rmu_sc0002558.1_g000005 Rmu_sc0007329.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075280 Rroxscaffold_1G00075290 Rroxscaffold_3G00264530
rosa_rugosa	Rorug04G0198700 Rorug04G0388100 Rorug04G0388200 Rorug04G0388300 Rorug04G0388400 Rorug04G0388500 Rorug04G0388600 Rorug04G0388700 Rorug04G0388800
rosa_samantha	Rh1AG366200 Rh1BG329000 Rh1CG342600 Rh1DG359300 Rh1DG360000 Rh4AG255600 Rh4BG261000 Rh4CG272100 Rh4DG255600 Rh5AG007800 Rh5AG007900 Rh5BG010000 Rh5BG010100 Rh5CG008500 Rh5CG008600 Rh5DG008500 Rh5DG008600
rosa_wichuraiana	Rw1G032250 Rw5G000810 Rw5G000820 Rw7G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	320
AccII	CGCG	1 cut(s)	254
AciI	CCGC	1 cut(s)	252
AcoI	YGGCCR	1 cut(s)	369
AcsI	RAATTY	1 cut(s)	38
AfaI	GTAC	1 cut(s)	310
AjnI	CCWGG	1 cut(s)	382
AleI	CACNNNNGTG	1 cut(s)	137
AluBI	AGCT	1 cut(s)	299
AluI	AGCT	1 cut(s)	299
Alw21I	GWGCWC	2 cut(s)	19, 301
Alw26I	GTCTC	1 cut(s)	266
AoxI	GGCC	2 cut(s)	112, 369
ApoI	RAATTY	1 cut(s)	38
Asp700I	GAANNNNTTC	1 cut(s)	241
AspLEI	GCGC	3 cut(s)	87, 94, 256
AsuHPI	GGTGA	1 cut(s)	202
BalI	TGGCCA	1 cut(s)	371
BanII	GRGCYC	1 cut(s)	301
BbsI	GAAGAC	1 cut(s)	62
Bbv12I	GWGCWC	2 cut(s)	19, 301
BciT130I	CCWGG	1 cut(s)	384
BclI	TGATCA	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	1 cut(s)	27
BglI	GCCNNNNNGGC	1 cut(s)	377
Bme1390I	CCNGG	1 cut(s)	384
BmiI	GGNNCC	2 cut(s)	177, 381
BmrFI	CCNGG	1 cut(s)	384
BpiI	GAAGAC	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	185
BsaXI	ACNNNNNCTCC	4 cut(s)	147, 177, 288, 318
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	1 cut(s)	185
BseRI	GAGGAG	2 cut(s)	270, 309
Bsh1236I	CGCG	1 cut(s)	254
BshFI	GGCC	2 cut(s)	114, 371
BsiHKAI	GWGCWC	2 cut(s)	19, 301
BsmAI	GTCTC	1 cut(s)	266
BsmI	GAATGC	1 cut(s)	53
BsnI	GGCC	2 cut(s)	114, 371
Bsp1286I	GDGCHC	2 cut(s)	19, 301
Bsp143I	GATC	1 cut(s)	192
BspACI	CCGC	1 cut(s)	252
BspANI	GGCC	2 cut(s)	114, 371
BspFNI	CGCG	1 cut(s)	254
BspLI	GGNNCC	2 cut(s)	177, 381
BssECI	CCNNGG	1 cut(s)	185
BssMI	GATC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	103
BstFNI	CGCG	1 cut(s)	254
BstHHI	GCGC	3 cut(s)	87, 94, 256
BstKTI	GATC	1 cut(s)	195
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	1 cut(s)	192
BstMWI	GCNNNNNNNGC	4 cut(s)	91, 98, 111, 377
BstNI	CCWGG	1 cut(s)	384
BstSCI	CCNGG	1 cut(s)	382
BstUI	CGCG	1 cut(s)	254
BstV2I	GAAGAC	1 cut(s)	62
BsuRI	GGCC	2 cut(s)	114, 371
Cac8I	GCNNGC	1 cut(s)	103
CfoI	GCGC	3 cut(s)	87, 94, 256
Csp6I	GTAC	1 cut(s)	309
CviAII	CATG	3 cut(s)	63, 247, 390
CviJI	RGCY	7 cut(s)	67, 114, 176, 242, 299, 371, 380
CviKI_1	RGCY	7 cut(s)	67, 114, 176, 242, 299, 371, 380
CviQI	GTAC	1 cut(s)	309
DpnI	GATC	1 cut(s)	194
DpnII	GATC	1 cut(s)	192
DrdI	GACNNNNNNGTC	1 cut(s)	320
DseDI	GACNNNNNNGTC	1 cut(s)	320
EaeI	YGGCCR	1 cut(s)	369
Ecl136II	GAGCTC	1 cut(s)	299
Eco130I	CCWWGG	1 cut(s)	185
Eco147I	AGGCCT	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	301
Eco53kI	GAGCTC	1 cut(s)	299
EcoICRI	GAGCTC	1 cut(s)	299
EcoRI	GAATTC	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	382
EcoT14I	CCWWGG	1 cut(s)	185
EcoT38I	GRGCYC	1 cut(s)	301
ErhI	CCWWGG	1 cut(s)	185
FaeI	CATG	3 cut(s)	66, 250, 393
FaiI	YATR	9 cut(s)	64, 83, 129, 167, 218, 248, 285, 349, 391
FatI	CATG	3 cut(s)	62, 246, 389
FbaI	TGATCA	1 cut(s)	192
FriOI	GRGCYC	1 cut(s)	301
FspBI	CTAG	1 cut(s)	27
GlaI	GCGC	3 cut(s)	86, 93, 255
HaeIII	GGCC	2 cut(s)	114, 371
HhaI	GCGC	3 cut(s)	87, 94, 256
Hin1II	CATG	3 cut(s)	66, 250, 393
Hin6I	GCGC	3 cut(s)	85, 92, 254
HinP1I	GCGC	3 cut(s)	85, 92, 254
HinfI	GANTC	2 cut(s)	213, 288
HphI	GGTGA	1 cut(s)	202
Hpy188I	TCNGA	2 cut(s)	271, 293
HpyAV	CCTTC	1 cut(s)	33
HpyCH4III	ACNGT	1 cut(s)	317
HpyF10VI	GCNNNNNNNGC	4 cut(s)	91, 98, 111, 377
Hsp92II	CATG	3 cut(s)	66, 250, 393
HspAI	GCGC	3 cut(s)	85, 92, 254
Ksp22I	TGATCA	1 cut(s)	192
Kzo9I	GATC	1 cut(s)	192
LmnI	GCTCC	5 cut(s)	14, 155, 181, 296, 385
LpnPI	CCDG	6 cut(s)	37, 87, 192, 315, 347, 369
MaeI	CTAG	1 cut(s)	27
MalI	GATC	1 cut(s)	194
MboI	GATC	1 cut(s)	192
MboII	GAAGA	3 cut(s)	67, 139, 216
MhlI	GDGCHC	2 cut(s)	19, 301
MlsI	TGGCCA	1 cut(s)	371
MluCI	AATT	1 cut(s)	38
MluNI	TGGCCA	1 cut(s)	371
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	7 cut(s)	104, 125, 269, 287, 291, 326, 362
Mox20I	TGGCCA	1 cut(s)	371
MroXI	GAANNNNTTC	1 cut(s)	241
MscI	TGGCCA	1 cut(s)	371
MslI	CAYNNNNRTG	1 cut(s)	137
Msp20I	TGGCCA	1 cut(s)	371
MspR9I	CCNGG	1 cut(s)	384
Mva1269I	GAATGC	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	384
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	4 cut(s)	91, 98, 111, 377
NdeII	GATC	1 cut(s)	192
NlaIII	CATG	3 cut(s)	66, 250, 393
NlaIV	GGNNCC	2 cut(s)	177, 381
OliI	CACNNNNGTG	1 cut(s)	137
PceI	AGGCCT	1 cut(s)	114
PctI	GAATGC	1 cut(s)	53
PdmI	GAANNNNTTC	1 cut(s)	241
PfeI	GAWTC	2 cut(s)	213, 288
PfoI	TCCNGGA	1 cut(s)	382
Psp124BI	GAGCTC	1 cut(s)	301
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	2 cut(s)	177, 381
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
RseI	CAYNNNNRTG	1 cut(s)	137
SacI	GAGCTC	1 cut(s)	301
Sau3AI	GATC	1 cut(s)	192
ScrFI	CCNGG	1 cut(s)	384
SduI	GDGCHC	2 cut(s)	19, 301
SetI	ASST	3 cut(s)	301, 337, 354
SmiMI	CAYNNNNRTG	1 cut(s)	137
Sse9I	AATT	1 cut(s)	38
SseBI	AGGCCT	1 cut(s)	114
SsiI	CCGC	1 cut(s)	252
SspMI	CTAG	1 cut(s)	27
SstI	GAGCTC	1 cut(s)	301
StuI	AGGCCT	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	382
StyI	CCWWGG	1 cut(s)	185
TaaI	ACNGT	1 cut(s)	317
TasI	AATT	1 cut(s)	38
TatI	WGTACW	1 cut(s)	308
TfiI	GAWTC	2 cut(s)	213, 288
XapI	RAATTY	1 cut(s)	38
XmnI	GAANNNNTTC	1 cut(s)	241
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.