Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000711

Physical Location & Seq

Genomic Coordinates Reverse (-)

55688969 .. 55689880

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0388400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGCTCATGATATCTGCCGGATCCTCAAAAATGATGTACAGTGTTTCCGAAAGAAAAAACTACATTAAAAATGTTCAGCTTCCGTACAGACATAAGAGGCTTTTTGGCTCTAGCCATGGTTGGTTGGCCATAGTAGACAAAATTAGTCGTGCCATAACTCTCATGAACCCTTTTGCACAAGCAATGGCGCCCATTCATCTCCCTCATTTGAATGAGGACGTCTCAAAGGTCATCCTATCTGCTGATCCTGCTTTGAATCCGAATAGTTATATGGTTATAGCAATCTACAATTCGATACACTTGGCTTTCCTTAAAGGAGGGCAGGAAGATTGGAATTGCATCAGACTAGACTCACTACATCACCCTCTTACTGATGTTATATTTTATAAAAGCCAAATCTACACGGTATCAATTCATGGAACGATTGTGTCAATCAATGTTAACATGTGTGTTATCAACTCTTCACATCCTCCAGAATTACTGGATGTTCGGGCATTCATGACTCGCATTAGAGATTTGGATCAGGCCTATCTTGTGGAATCAACCAAGGGACACCTATGGCACGTACAAAGATGTTCTATAGGAGTCACACAATTTGACGGCAATGTACTTTTCGAAGAGGGATTCAGGGTATACAAGGTGGTGTTCAGCGATACAGATGGTTGCATGGTGAAGCATGTTGAGGTAAAAACCATAGGAGATGAGGCCTTGTTCATTGGCAAAAATTATTCAGTCTCTGTTTCGGCTTCAAAGTTTCCTGGGTGCCAGCCAAATTCCATATACTACACTGGAGGTTCGAAAGAATTTGTTATGAGAATTTTCGATGTAGAGTTCGGAACCGCTTGTGCAGTTATAGAAGGTCGAAAGCCACGCGGACTTTGGATTACGCCACCGTTTAAGGGCCTCGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

303

Amino Acids

34.0

Weight (kDa)

8.64

Isoelectric Point (pI)

32.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	12 - 264	3e-45	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35740 AT4G16480 AT4G16480 AT4G16480
fragaria_vesca	FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00760
malus_domestica	MD05G1108700.v1.1 MD05G1359700.v1.1 MD05G1359900.v1.1 MD10G1335300.v1.1 MD10G1335500.v1.1
prunus_persica	Prupe.4G008300_v2.0.a1 Prupe.4G008300_v2.0.a1 Prupe.4G008400_v2.0.a1
pyrus_communis	pycom05g32480 pycom05g32490 pycom10g28510
rosa_chinensis	RchiOBHm_Chr1g0370501 RchiOBHm_Chr4g0424641 RchiOBHm_Chr5g0000981 RchiOBHm_Chr5g0001001 RchiOBHm_Chr7g0190531
rosa_laevigata	RLG00000004519 RLG00000030911 RLG00000030912
rosa_multiflora	Rmu_co8357507.1_g000001 Rmu_co8503263.1_g000001 Rmu_sc0000255.1_g000023 Rmu_sc0000255.1_g000024 Rmu_sc0002558.1_g000005 Rmu_sc0007329.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075280 Rroxscaffold_1G00075290 Rroxscaffold_3G00264530
rosa_rugosa	Rorug04G0198700 Rorug04G0388100 Rorug04G0388200 Rorug04G0388300 Rorug04G0388400 Rorug04G0388500 Rorug04G0388600 Rorug04G0388700 Rorug04G0388800
rosa_samantha	Rh1AG366200 Rh1BG329000 Rh1CG342600 Rh1DG359300 Rh1DG360000 Rh4AG255600 Rh4BG261000 Rh4CG272100 Rh4DG255600 Rh5AG007800 Rh5AG007900 Rh5BG010000 Rh5BG010100 Rh5CG008500 Rh5CG008600 Rh5DG008500 Rh5DG008600
rosa_wichuraiana	Rw1G032250 Rw5G000810 Rw5G000820 Rw7G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	387
AatII	GACGTC	1 cut(s)	222
AccB1I	GGYRCC	2 cut(s)	187, 762
AccI	GTMKAC	2 cut(s)	135, 633
AccII	CGCG	1 cut(s)	873
AciI	CCGC	2 cut(s)	840, 873
AclWI	GGATC	4 cut(s)	15, 28, 239, 528
AcoI	YGGCCR	1 cut(s)	126
AcsI	RAATTY	3 cut(s)	772, 803, 816
AcyI	GRCGYC	2 cut(s)	188, 219
AfaI	GTAC	4 cut(s)	38, 86, 567, 609
AfiI	CCNNNNNNNGG	1 cut(s)	899
AflIII	ACRYGT	1 cut(s)	444
AgsI	TTSAA	3 cut(s)	211, 256, 750
AjnI	CCWGG	1 cut(s)	757
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Alw26I	GTCTC	2 cut(s)	226, 739
AlwI	GGATC	4 cut(s)	15, 28, 239, 528
AlwNI	CAGNNNCTG	1 cut(s)	737
AoxI	GGCC	4 cut(s)	126, 525, 705, 901
ApoI	RAATTY	3 cut(s)	772, 803, 816
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	1 cut(s)	901
AsuHPI	GGTGA	2 cut(s)	353, 682
AsuII	TTCGAA	2 cut(s)	615, 797
BalI	TGGCCA	1 cut(s)	128
BamHI	GGATCC	1 cut(s)	20
BanI	GGYRCC	2 cut(s)	187, 762
BccI	CCATC	1 cut(s)	653
BceAI	ACGGC	1 cut(s)	616
BciT130I	CCWGG	1 cut(s)	759
BcoDI	GTCTC	2 cut(s)	226, 739
BfaI	CTAG	3 cut(s)	111, 347, 910
BfmI	CTRYAG	1 cut(s)	579
BfoI	RGCGCY	1 cut(s)	191
Bme1390I	CCNGG	1 cut(s)	759
BmgT120I	GGNCC	1 cut(s)	901
BmiI	GGNNCC	4 cut(s)	22, 189, 764, 838
BmrFI	CCNGG	1 cut(s)	759
BmsI	GCATC	1 cut(s)	348
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
BpmI	CTGGAG	2 cut(s)	456, 810
Bpu14I	TTCGAA	2 cut(s)	615, 797
BsaAI	YACGTR	1 cut(s)	565
BsaBI	GATNNNNATC	1 cut(s)	519
BsaHI	GRCGYC	2 cut(s)	188, 219
BsaJI	CCNNGG	4 cut(s)	115, 546, 758, 904
Bsc4I	CCNNNNNNNGG	1 cut(s)	899
Bse1I	ACTGG	2 cut(s)	486, 793
Bse3DI	GCAATG	2 cut(s)	189, 610
Bse8I	GATNNNNATC	1 cut(s)	519
BseBI	CCWGG	1 cut(s)	759
BseDI	CCNNGG	4 cut(s)	115, 546, 758, 904
BseGI	GGATG	3 cut(s)	231, 466, 490
BseJI	GATNNNNATC	1 cut(s)	519
BseLI	CCNNNNNNNGG	1 cut(s)	899
BseMI	GCAATG	2 cut(s)	189, 610
BseNI	ACTGG	2 cut(s)	486, 793
BsgI	GTGCAG	1 cut(s)	867
Bsh1236I	CGCG	1 cut(s)	873
BshFI	GGCC	4 cut(s)	128, 527, 707, 903
BshNI	GGYRCC	2 cut(s)	187, 762
BsiSI	CCGG	1 cut(s)	18
BslFI	GGGAC	1 cut(s)	564
BslI	CCNNNNNNNGG	1 cut(s)	899
BsmAI	GTCTC	2 cut(s)	226, 739
BsmBI	CGTCTC	1 cut(s)	226
BsmFI	GGGAC	1 cut(s)	564
BsmI	GAATGC	1 cut(s)	494
BsnI	GGCC	4 cut(s)	128, 527, 707, 903
Bsp119I	TTCGAA	2 cut(s)	615, 797
Bsp1407I	TGTACA	1 cut(s)	36
Bsp143I	GATC	3 cut(s)	20, 244, 520
Bsp19I	CCATGG	1 cut(s)	115
BspACI	CCGC	2 cut(s)	840, 873
BspANI	GGCC	4 cut(s)	128, 527, 707, 903
BspFNI	CGCG	1 cut(s)	873
BspHI	TCATGA	3 cut(s)	6, 162, 498
BspLI	GGNNCC	4 cut(s)	22, 189, 764, 838
BspPI	GGATC	4 cut(s)	15, 28, 239, 528
BspT104I	TTCGAA	2 cut(s)	615, 797
BspT107I	GGYRCC	2 cut(s)	187, 762
BsrDI	GCAATG	2 cut(s)	189, 610
BsrGI	TGTACA	1 cut(s)	36
BsrI	ACTGG	2 cut(s)	486, 793
BssECI	CCNNGG	4 cut(s)	115, 546, 758, 904
BssMI	GATC	3 cut(s)	20, 244, 520
BssNAI	GTATAC	1 cut(s)	634
BssNI	GRCGYC	2 cut(s)	188, 219
BssT1I	CCWWGG	2 cut(s)	115, 546
Bst1107I	GTATAC	1 cut(s)	634
Bst2UI	CCWGG	1 cut(s)	759
Bst4CI	ACNGT	3 cut(s)	41, 406, 894
Bst6I	CTCTTC	2 cut(s)	466, 612
BstACI	GRCGYC	2 cut(s)	188, 219
BstAUI	TGTACA	1 cut(s)	36
BstBAI	YACGTR	1 cut(s)	565
BstBI	TTCGAA	2 cut(s)	615, 797
BstC8I	GCNNGC	1 cut(s)	767
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	3 cut(s)	231, 466, 490
BstFNI	CGCG	1 cut(s)	873
BstH2I	RGCGCY	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	3 cut(s)	23, 247, 523
BstMAI	GTCTC	2 cut(s)	226, 739
BstMBI	GATC	3 cut(s)	20, 244, 520
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstNI	CCWGG	1 cut(s)	759
BstNSI	RCATGY	2 cut(s)	448, 680
BstSCI	CCNGG	1 cut(s)	757
BstSFI	CTRYAG	1 cut(s)	579
BstUI	CGCG	1 cut(s)	873
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
BstZ17I	GTATAC	1 cut(s)	634
BsuRI	GGCC	4 cut(s)	128, 527, 707, 903
BtgI	CCRYGG	1 cut(s)	115
BtsCI	GGATG	3 cut(s)	231, 466, 490
BtsIMutI	CAGTG	2 cut(s)	46, 786
Cac8I	GCNNGC	1 cut(s)	767
CaiI	CAGNNNCTG	1 cut(s)	737
CciI	TCATGA	3 cut(s)	6, 162, 498
CfoI	GCGC	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	901
Csp6I	GTAC	4 cut(s)	37, 85, 566, 608
CviAII	CATG	8 cut(s)	7, 116, 163, 416, 445, 499, 667, 677
CviQI	GTAC	4 cut(s)	37, 85, 566, 608
DinI	GGCGCC	1 cut(s)	189
DpnI	GATC	3 cut(s)	22, 246, 522
DpnII	GATC	3 cut(s)	20, 244, 520
EaeI	YGGCCR	1 cut(s)	126
Eam1104I	CTCTTC	2 cut(s)	466, 612
EarI	CTCTTC	2 cut(s)	466, 612
Eco130I	CCWWGG	2 cut(s)	115, 546
Eco147I	AGGCCT	2 cut(s)	527, 707
Eco32I	GATATC	1 cut(s)	12
EcoO109I	RGGNCCY	1 cut(s)	901
EcoRII	CCWGG	1 cut(s)	757
EcoRV	GATATC	1 cut(s)	12
EcoT14I	CCWWGG	2 cut(s)	115, 546
EgeI	GGCGCC	1 cut(s)	189
EheI	GGCGCC	1 cut(s)	189
ErhI	CCWWGG	2 cut(s)	115, 546
Esp3I	CGTCTC	1 cut(s)	226
FaeI	CATG	8 cut(s)	10, 119, 166, 419, 448, 502, 670, 680
FaqI	GGGAC	1 cut(s)	564
FatI	CATG	8 cut(s)	6, 115, 162, 415, 444, 498, 666, 676
FblI	GTMKAC	2 cut(s)	135, 633
FokI	GGATG	3 cut(s)	218, 453, 497
FspBI	CTAG	3 cut(s)	111, 347, 910
GlaI	GCGC	1 cut(s)	189
GsuI	CTGGAG	2 cut(s)	456, 810
HaeII	RGCGCY	1 cut(s)	191
HaeIII	GGCC	4 cut(s)	128, 527, 707, 903
HapII	CCGG	1 cut(s)	18
HhaI	GCGC	1 cut(s)	190
Hin1I	GRCGYC	2 cut(s)	188, 219
Hin1II	CATG	8 cut(s)	10, 119, 166, 419, 448, 502, 670, 680
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HinfI	GANTC	6 cut(s)	256, 350, 502, 539, 585, 624
HpaI	GTTAAC	1 cut(s)	442
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	2 cut(s)	353, 682
Hpy166II	GTNNAC	3 cut(s)	136, 442, 634
Hpy188I	TCNGA	4 cut(s)	49, 261, 344, 836
Hpy188III	TCNNGA	4 cut(s)	7, 163, 473, 499
Hpy8I	GTNNAC	3 cut(s)	136, 442, 634
HpyAV	CCTTC	1 cut(s)	851
HpyCH4III	ACNGT	3 cut(s)	41, 406, 894
HpyCH4IV	ACGT	2 cut(s)	219, 564
HpyCH4V	TGCA	4 cut(s)	176, 339, 666, 848
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpySE526I	ACGT	2 cut(s)	219, 564
Hsp92I	GRCGYC	2 cut(s)	188, 219
Hsp92II	CATG	8 cut(s)	10, 119, 166, 419, 448, 502, 670, 680
HspAI	GCGC	1 cut(s)	188
KasI	GGCGCC	1 cut(s)	187
KspAI	GTTAAC	1 cut(s)	442
Kzo9I	GATC	3 cut(s)	20, 244, 520
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	3 cut(s)	111, 347, 910
MaeII	ACGT	2 cut(s)	219, 564
MaeIII	GTNAC	1 cut(s)	586
MalI	GATC	3 cut(s)	22, 246, 522
MboI	GATC	3 cut(s)	20, 244, 520
MboII	GAAGA	3 cut(s)	338, 453, 629
MflI	RGATCY	1 cut(s)	20
MlsI	TGGCCA	1 cut(s)	128
MluNI	TGGCCA	1 cut(s)	128
Mly113I	GGCGCC	1 cut(s)	188
MlyI	GAGTC	3 cut(s)	344, 496, 594
Mox20I	TGGCCA	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	4 cut(s)	66, 312, 441, 897
MslI	CAYNNNNRTG	1 cut(s)	210
Msp20I	TGGCCA	1 cut(s)	128
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	1 cut(s)	759
Mva1269I	GAATGC	1 cut(s)	494
MvaI	CCWGG	1 cut(s)	759
MvnI	CGCG	1 cut(s)	873
MwoI	GCNNNNNNNGC	1 cut(s)	248
NarI	GGCGCC	1 cut(s)	188
NcoI	CCATGG	1 cut(s)	115
NdeII	GATC	3 cut(s)	20, 244, 520
NlaIII	CATG	8 cut(s)	10, 119, 166, 419, 448, 502, 670, 680
NlaIV	GGNNCC	4 cut(s)	22, 189, 764, 838
NmeAIII	GCCGAG	1 cut(s)	885
NmuCI	GTSAC	1 cut(s)	586
NspI	RCATGY	2 cut(s)	448, 680
NspV	TTCGAA	2 cut(s)	615, 797
PagI	TCATGA	3 cut(s)	6, 162, 498
PceI	AGGCCT	2 cut(s)	527, 707
PciI	ACATGT	1 cut(s)	444
PctI	GAATGC	1 cut(s)	494
PfeI	GAWTC	3 cut(s)	256, 539, 624
PleI	GAGTC	3 cut(s)	344, 496, 593
PluTI	GGCGCC	1 cut(s)	191
PpsI	GAGTC	3 cut(s)	344, 496, 593
Ppu21I	YACGTR	1 cut(s)	565
PscI	ACATGT	1 cut(s)	444
PsiI	TTATAA	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	757
PspGI	CCWGG	1 cut(s)	757
PspN4I	GGNNCC	4 cut(s)	22, 189, 764, 838
PspPI	GGNCC	1 cut(s)	901
PstNI	CAGNNNCTG	1 cut(s)	737
PsuI	RGATCY	1 cut(s)	20
RsaI	GTAC	4 cut(s)	38, 86, 567, 609
RsaNI	GTAC	4 cut(s)	37, 85, 566, 608
RseI	CAYNNNNRTG	1 cut(s)	210
SaqAI	TTAA	4 cut(s)	66, 312, 441, 897
Sau3AI	GATC	3 cut(s)	20, 244, 520
Sau96I	GGNCC	1 cut(s)	901
SchI	GAGTC	3 cut(s)	344, 496, 594
ScrFI	CCNGG	1 cut(s)	759
SetI	ASST	9 cut(s)	81, 222, 231, 558, 567, 642, 687, 796, 862
SfaNI	GCATC	1 cut(s)	348
SfcI	CTRYAG	1 cut(s)	579
SfoI	GGCGCC	1 cut(s)	189
SfuI	TTCGAA	2 cut(s)	615, 797
SmiMI	CAYNNNNRTG	1 cut(s)	210
SseBI	AGGCCT	2 cut(s)	527, 707
SsiI	CCGC	2 cut(s)	840, 873
SspDI	GGCGCC	1 cut(s)	187
SspMI	CTAG	3 cut(s)	111, 347, 910
StuI	AGGCCT	2 cut(s)	527, 707
StyD4I	CCNGG	1 cut(s)	757
StyI	CCWWGG	2 cut(s)	115, 546
TaaI	ACNGT	3 cut(s)	41, 406, 894
TaiI	ACGT	2 cut(s)	222, 567
TaqI	TCGA	5 cut(s)	293, 615, 797, 822, 862
TatI	WGTACW	2 cut(s)	36, 607
TfiI	GAWTC	3 cut(s)	256, 539, 624
Tru1I	TTAA	4 cut(s)	66, 312, 441, 897
Tru9I	TTAA	4 cut(s)	66, 312, 441, 897
TscAI	CASTG	2 cut(s)	46, 793
TseFI	GTSAC	1 cut(s)	586
Tsp45I	GTSAC	1 cut(s)	586
TspDTI	ATGAA	5 cut(s)	179, 185, 404, 487, 703
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	2 cut(s)	46, 793
XapI	RAATTY	3 cut(s)	772, 803, 816
XceI	RCATGY	2 cut(s)	448, 680
XcmI	CCANNNNNNNNNTGG	1 cut(s)	876
XmiI	GTMKAC	2 cut(s)	135, 633
XspI	CTAG	3 cut(s)	111, 347, 910
ZraI	GACGTC	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.