Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000711

Physical Location & Seq

Genomic Coordinates Forward (+)

58390622 .. 58391447

Gene Structure 826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG359300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCTTCTATGACCTCACCACTATACATCTCAAAAGCTTATCCTGTTAGAATCCGAGGTGCTCTTGCTAGTACAAATGGTTTTCTAACTACTGGAGGTCAATTTTTGTCATACCTCATCAATCTTGCCTTCACCAAGGCTCCTGGAACCTGGCGTTGGATGCTTGGAGTAGCCGGAGTTCCTGCTGTGGTTCAGTTTGGATTGATGTGGTCACTCCCAGAGTCTCCAAGGTGGCTCTACAGAAAGAATAAGGTAAATGAAGCCAGGGCTATCTTAGAGAAAATTTATCCTGCGAATGAGGTTGAGGATGAAATGAAAGCATTGCACGAATCTGTTGAAATGGAAAAGGCCGAGGAAGGAGATGTTGGTGATGGCATCGTAGCAAAACTAAAGGGTGCATTCAACAACCCTGTGGTCCGAAGAGGACTCTGTGCAGGCATAACAGTCCCAAGATTTGCTTCCAACCAAACAGCTTTAGCACTTCCACTCATCACTTCTGGTCTCAATGTTGTTGGCACTGTAATCAGTATGTGCTTTGTGGATAGATATGGAAGGAGAAGGCTTATGATCATTTTTATGGTTGGAATTATCACTTGTCTGGTGGTGTTATCTGTGGTGTTTTTCCAGGCAGCAGCTCACGTTCCTCGTATTGGCAATTTGGAATCAACTCATTTTGGTAGTAACTCTACATGTCCAGCTTATGTGTCTGCCCCTAATCCAGCCTCATGGAACTGCATGACATGTTTGAAAGCTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

252

Amino Acids

27.46

Weight (kDa)

9.32

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	2 - 147	2.7e-29	Sugar (and other) transporter
Sugar_tr	PF00083	159 - 211	4.6e-06	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35740 AT4G16480 AT4G16480 AT4G16480
fragaria_vesca	FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00760
malus_domestica	MD05G1108700.v1.1 MD05G1359700.v1.1 MD05G1359900.v1.1 MD10G1335300.v1.1 MD10G1335500.v1.1
prunus_persica	Prupe.4G008300_v2.0.a1 Prupe.4G008300_v2.0.a1 Prupe.4G008400_v2.0.a1
pyrus_communis	pycom05g32480 pycom05g32490 pycom10g28510
rosa_chinensis	RchiOBHm_Chr1g0370501 RchiOBHm_Chr4g0424641 RchiOBHm_Chr5g0000981 RchiOBHm_Chr5g0001001 RchiOBHm_Chr7g0190531
rosa_laevigata	RLG00000004519 RLG00000030911 RLG00000030912
rosa_multiflora	Rmu_co8357507.1_g000001 Rmu_co8503263.1_g000001 Rmu_sc0000255.1_g000023 Rmu_sc0000255.1_g000024 Rmu_sc0002558.1_g000005 Rmu_sc0007329.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075280 Rroxscaffold_1G00075290 Rroxscaffold_3G00264530
rosa_rugosa	Rorug04G0198700 Rorug04G0388100 Rorug04G0388200 Rorug04G0388300 Rorug04G0388400 Rorug04G0388500 Rorug04G0388600 Rorug04G0388700 Rorug04G0388800
rosa_samantha	Rh1AG366200 Rh1BG329000 Rh1CG342600 Rh1DG359300 Rh1DG360000 Rh4AG255600 Rh4BG261000 Rh4CG272100 Rh4DG255600 Rh5AG007800 Rh5AG007900 Rh5BG010000 Rh5BG010100 Rh5CG008500 Rh5CG008600 Rh5DG008500 Rh5DG008600
rosa_wichuraiana	Rw1G032250 Rw5G000810 Rw5G000820 Rw7G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	282
AfaI	GTAC	1 cut(s)	73
AfiI	CCNNNNNNNGG	2 cut(s)	156, 650
AflIII	ACRYGT	2 cut(s)	689, 740
AgsI	TTSAA	3 cut(s)	338, 403, 748
AjnI	CCWGG	4 cut(s)	142, 149, 263, 624
AjuI	GAANNNNNNNTTGG	6 cut(s)	139, 171, 348, 380, 442, 474
AluBI	AGCT	5 cut(s)	38, 473, 635, 698, 752
AluI	AGCT	5 cut(s)	38, 473, 635, 698, 752
Alw21I	GWGCWC	1 cut(s)	64
Alw26I	GTCTC	2 cut(s)	228, 506
AoxI	GGCC	1 cut(s)	348
ApeKI	GCWGC	2 cut(s)	629, 632
ApoI	RAATTY	1 cut(s)	282
AspS9I	GGNCC	1 cut(s)	415
AsuHPI	GGTGA	3 cut(s)	9, 124, 380
AvaII	GGWCC	1 cut(s)	415
Bbv12I	GWGCWC	1 cut(s)	64
BbvI	GCAGC	2 cut(s)	641, 644
BccI	CCATC	1 cut(s)	365
BciT130I	CCWGG	4 cut(s)	144, 151, 265, 626
BclI	TGATCA	1 cut(s)	567
BcoDI	GTCTC	2 cut(s)	228, 506
BfaI	CTAG	1 cut(s)	69
BfmI	CTRYAG	1 cut(s)	238
BisI	GCNGC	2 cut(s)	630, 633
BlsI	GCNGC	2 cut(s)	631, 634
Bme1390I	CCNGG	4 cut(s)	144, 151, 265, 626
Bme18I	GGWCC	1 cut(s)	415
BmgT120I	GGNCC	1 cut(s)	415
BmiI	GGNNCC	2 cut(s)	141, 148
BmrFI	CCNGG	4 cut(s)	144, 151, 265, 626
BmsI	GCATC	2 cut(s)	150, 384
BpmI	CTGGAG	1 cut(s)	114
BsaI	GGTCTC	1 cut(s)	506
BsaJI	CCNNGG	5 cut(s)	55, 135, 227, 264, 351
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 650
Bse1I	ACTGG	1 cut(s)	97
Bse3DI	GCAATG	1 cut(s)	320
BseBI	CCWGG	4 cut(s)	144, 151, 265, 626
BseDI	CCNNGG	5 cut(s)	55, 135, 227, 264, 351
BseGI	GGATG	2 cut(s)	165, 313
BseLI	CCNNNNNNNGG	2 cut(s)	156, 650
BseMI	GCAATG	1 cut(s)	320
BseNI	ACTGG	1 cut(s)	97
BseXI	GCAGC	2 cut(s)	641, 644
BsgI	GTGCAG	1 cut(s)	453
BshFI	GGCC	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	64
BsiSI	CCGG	1 cut(s)	174
BslFI	GGGAC	1 cut(s)	431
BslI	CCNNNNNNNGG	2 cut(s)	156, 650
BsmAI	GTCTC	2 cut(s)	228, 506
BsmFI	GGGAC	1 cut(s)	431
BsmI	GAATGC	1 cut(s)	398
BsnI	GGCC	1 cut(s)	350
Bso31I	GGTCTC	1 cut(s)	506
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	1 cut(s)	567
BspANI	GGCC	1 cut(s)	350
BspLI	GGNNCC	2 cut(s)	141, 148
BspTNI	GGTCTC	1 cut(s)	506
BsrDI	GCAATG	1 cut(s)	320
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	5 cut(s)	55, 135, 227, 264, 351
BssMI	GATC	1 cut(s)	567
BssT1I	CCWWGG	2 cut(s)	135, 227
Bst2UI	CCWGG	4 cut(s)	144, 151, 265, 626
Bst4CI	ACNGT	2 cut(s)	445, 520
Bst6I	CTCTTC	1 cut(s)	415
BstC8I	GCNNGC	1 cut(s)	436
BstDEI	CTNAG	2 cut(s)	274, 753
BstF5I	GGATG	2 cut(s)	165, 313
BstKTI	GATC	1 cut(s)	570
BstMAI	GTCTC	2 cut(s)	228, 506
BstMBI	GATC	1 cut(s)	567
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstNI	CCWGG	4 cut(s)	144, 151, 265, 626
BstNSI	RCATGY	2 cut(s)	693, 744
BstSCI	CCNGG	4 cut(s)	142, 149, 263, 624
BstSFI	CTRYAG	1 cut(s)	238
BstV1I	GCAGC	2 cut(s)	641, 644
BstXI	CCANNNNNNTGG	1 cut(s)	726
BsuRI	GGCC	1 cut(s)	350
BtsCI	GGATG	2 cut(s)	165, 313
BtsIMutI	CAGTG	1 cut(s)	516
Cac8I	GCNNGC	1 cut(s)	436
Cfr13I	GGNCC	1 cut(s)	415
Csp6I	GTAC	1 cut(s)	72
CviAII	CATG	4 cut(s)	690, 726, 736, 741
CviQI	GTAC	1 cut(s)	72
DdeI	CTNAG	2 cut(s)	274, 753
DpnI	GATC	1 cut(s)	569
DpnII	GATC	1 cut(s)	567
Eam1104I	CTCTTC	1 cut(s)	415
EarI	CTCTTC	1 cut(s)	415
Eco130I	CCWWGG	2 cut(s)	135, 227
Eco31I	GGTCTC	1 cut(s)	506
Eco47I	GGWCC	1 cut(s)	415
EcoRII	CCWGG	4 cut(s)	142, 149, 263, 624
EcoT14I	CCWWGG	2 cut(s)	135, 227
ErhI	CCWWGG	2 cut(s)	135, 227
FaeI	CATG	4 cut(s)	693, 729, 739, 744
FalI	AAGNNNNNCTT	2 cut(s)	442, 474
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	4 cut(s)	689, 725, 735, 740
FbaI	TGATCA	1 cut(s)	567
Fnu4HI	GCNGC	2 cut(s)	630, 633
FokI	GGATG	2 cut(s)	172, 320
Fsp4HI	GCNGC	2 cut(s)	630, 633
FspBI	CTAG	1 cut(s)	69
GluI	GCNGC	2 cut(s)	630, 633
GsuI	CTGGAG	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	350
HapII	CCGG	1 cut(s)	174
Hin1II	CATG	4 cut(s)	693, 729, 739, 744
HindIII	AAGCTT	1 cut(s)	36
HinfI	GANTC	5 cut(s)	51, 221, 329, 426, 662
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	3 cut(s)	9, 124, 380
Hpy188I	TCNGA	2 cut(s)	56, 419
HpyAV	CCTTC	4 cut(s)	139, 350, 546, 552
HpyCH4III	ACNGT	2 cut(s)	445, 520
HpyCH4IV	ACGT	1 cut(s)	639
HpyCH4V	TGCA	4 cut(s)	325, 398, 434, 735
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpyF3I	CTNAG	2 cut(s)	274, 753
HpySE526I	ACGT	1 cut(s)	639
Hsp92II	CATG	4 cut(s)	693, 729, 739, 744
Ksp22I	TGATCA	1 cut(s)	567
Kzo9I	GATC	1 cut(s)	567
LmnI	GCTCC	1 cut(s)	145
Lsp1109I	GCAGC	2 cut(s)	641, 644
LweI	GCATC	2 cut(s)	150, 384
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	1 cut(s)	639
MaeIII	GTNAC	2 cut(s)	210, 680
MalI	GATC	1 cut(s)	569
MboI	GATC	1 cut(s)	567
MboII	GAAGA	1 cut(s)	432
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	4 cut(s)	101, 282, 585, 655
MlyI	GAGTC	2 cut(s)	230, 420
MmeI	TCCRAC	3 cut(s)	137, 486, 562
MslI	CAYNNNNRTG	1 cut(s)	575
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	4 cut(s)	144, 151, 265, 626
Mva1269I	GAATGC	1 cut(s)	398
MvaI	CCWGG	4 cut(s)	144, 151, 265, 626
MwoI	GCNNNNNNNGC	1 cut(s)	160
NdeII	GATC	1 cut(s)	567
NlaIII	CATG	4 cut(s)	693, 729, 739, 744
NlaIV	GGNNCC	2 cut(s)	141, 148
NmeAIII	GCCGAG	1 cut(s)	376
NmuCI	GTSAC	1 cut(s)	210
NspI	RCATGY	2 cut(s)	693, 744
PciI	ACATGT	2 cut(s)	689, 740
PctI	GAATGC	1 cut(s)	398
PfeI	GAWTC	3 cut(s)	51, 329, 662
PfoI	TCCNGGA	1 cut(s)	142
PkrI	GCNGC	2 cut(s)	631, 634
PleI	GAGTC	2 cut(s)	229, 420
PpsI	GAGTC	2 cut(s)	229, 420
PscI	ACATGT	2 cut(s)	689, 740
Psp6I	CCWGG	4 cut(s)	142, 149, 263, 624
PspGI	CCWGG	4 cut(s)	142, 149, 263, 624
PspN4I	GGNNCC	2 cut(s)	141, 148
PspPI	GGNCC	1 cut(s)	415
PsrI	GAACNNNNNNTAC	2 cut(s)	162, 194
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
RseI	CAYNNNNRTG	1 cut(s)	575
SatI	GCNGC	2 cut(s)	630, 633
Sau3AI	GATC	1 cut(s)	567
Sau96I	GGNCC	1 cut(s)	415
SchI	GAGTC	2 cut(s)	230, 420
ScrFI	CCNGG	4 cut(s)	144, 151, 265, 626
SduI	GDGCHC	1 cut(s)	64
SfaNI	GCATC	2 cut(s)	150, 384
SfcI	CTRYAG	1 cut(s)	238
SinI	GGWCC	1 cut(s)	415
SmiMI	CAYNNNNRTG	1 cut(s)	575
Sse9I	AATT	4 cut(s)	101, 282, 585, 655
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	4 cut(s)	142, 149, 263, 624
StyI	CCWWGG	2 cut(s)	135, 227
TaaI	ACNGT	2 cut(s)	445, 520
TaiI	ACGT	1 cut(s)	642
TasI	AATT	4 cut(s)	101, 282, 585, 655
TatI	WGTACW	1 cut(s)	71
TfiI	GAWTC	3 cut(s)	51, 329, 662
TscAI	CASTG	1 cut(s)	523
TseFI	GTSAC	1 cut(s)	210
TseI	GCWGC	2 cut(s)	629, 632
Tsp45I	GTSAC	1 cut(s)	210
TspDTI	ATGAA	3 cut(s)	273, 324, 329
TspRI	CASTG	1 cut(s)	523
VpaK11BI	GGWCC	1 cut(s)	415
XapI	RAATTY	1 cut(s)	282
XceI	RCATGY	2 cut(s)	693, 744
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.