Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000711

Physical Location & Seq

Genomic Coordinates Reverse (-)

59983305 .. 59984471

Gene Structure 1167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004519

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGAAGGAGGGCACCCGGGTGCTAGTAAGACAGAGTTCACAGAGTGTTGGAGAACAACATGGAAGACCCTTACATTATGTGTCTCACCTTCTCTGCTGGTATTGGAGGCCTCCTTTTCGGATACGATACAGTTGCCGACTTGCCGGCGCCATATTTGGTGCTGCAATTGGAGGGTGGATGAGCGATGCTCTTGGCAGCAGAAAGTCAATCTTGTGTACAGATTTTGTGTTCTTCTTTGGTGCAATAGTCATGGGCTGATGGCTTTTGCACCAGCTTCGCGGGTGATCATAATTGGAAGAATTCTGGTTGGTTTGGGAATGGGCATGGCTTCTATGACCTCGCCACCGTACATCTCAGAAGCTTCTCCCGCTAGAATTCGAGGTGCCCTTGTTAGTGCAAATGGTTTTCTAATTACTGGAGGTCAATTTTTGGCATACCTCATCAATCTTGCCTTCACCAAGACTCCTGGAACCTGGCGTTGGATGCCTGGAGTAGCCGGAGTTCCTGCTTTGGTTCAGTTAGGATTGATGTGGTCACTTCCAGAGTCTCCAAGGTGGCTCTACATAAAGAATAAGGCTGAGGAAGGAGATCTTGGTGATGGCATCATAGCAAAACTAAAGGGTGCATTCAGCAATCCTGTGGTCCGAAGAGGACTCTATGCAGGCATAACAGTCCAAGTAGCTCAGCAATTTGTGGGTATCAACATTGTCATGTATTACAGCCGAACTATTGTTCAATTTGCTGAATTTGCTTCCAACCAAACGGCTTTAGCACTTTGTCTCATCACTTCTGGTCTCAATGTTGTTGGCACTGTAATCAGTATGTGCTTTGTGGATGGATATGGTAGGAGAAGGCTTATGATCATTTCTATGGTTGGAATTATCACTTGCCTGGTGGTGTTATCTGTGGTGTTTTTACAGGCGGCAGCTCAAGCTCCTCGTATTAGTAATTTGGAATCAACTCTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

324

Amino Acids

35.5

Weight (kDa)

9.3

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	72 - 307	3.6e-15	Major Facilitator Superfamily
Sugar_tr	PF00083	75 - 195	5.9e-35	Sugar (and other) transporter
Sugar_tr	PF00083	207 - 310	2.4e-17	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35740 AT4G16480 AT4G16480 AT4G16480
fragaria_vesca	FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00760
malus_domestica	MD05G1108700.v1.1 MD05G1359700.v1.1 MD05G1359900.v1.1 MD10G1335300.v1.1 MD10G1335500.v1.1
prunus_persica	Prupe.4G008300_v2.0.a1 Prupe.4G008300_v2.0.a1 Prupe.4G008400_v2.0.a1
pyrus_communis	pycom05g32480 pycom05g32490 pycom10g28510
rosa_chinensis	RchiOBHm_Chr1g0370501 RchiOBHm_Chr4g0424641 RchiOBHm_Chr5g0000981 RchiOBHm_Chr5g0001001 RchiOBHm_Chr7g0190531
rosa_laevigata	RLG00000004519 RLG00000030911 RLG00000030912
rosa_multiflora	Rmu_co8357507.1_g000001 Rmu_co8503263.1_g000001 Rmu_sc0000255.1_g000023 Rmu_sc0000255.1_g000024 Rmu_sc0002558.1_g000005 Rmu_sc0007329.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075280 Rroxscaffold_1G00075290 Rroxscaffold_3G00264530
rosa_rugosa	Rorug04G0198700 Rorug04G0388100 Rorug04G0388200 Rorug04G0388300 Rorug04G0388400 Rorug04G0388500 Rorug04G0388600 Rorug04G0388700 Rorug04G0388800
rosa_samantha	Rh1AG366200 Rh1BG329000 Rh1CG342600 Rh1DG359300 Rh1DG360000 Rh4AG255600 Rh4BG261000 Rh4CG272100 Rh4DG255600 Rh5AG007800 Rh5AG007900 Rh5BG010000 Rh5BG010100 Rh5CG008500 Rh5CG008600 Rh5DG008500 Rh5DG008600
rosa_wichuraiana	Rw1G032250 Rw5G000810 Rw5G000820 Rw7G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	12, 147, 383
AccII	CGCG	1 cut(s)	280
AciI	CCGC	3 cut(s)	280, 369, 923
AcsI	RAATTY	3 cut(s)	300, 375, 746
AcyI	GRCGYC	1 cut(s)	148
AdeI	CACNNNGTG	1 cut(s)	45
AfaI	GTAC	2 cut(s)	218, 350
AfiI	CCNNNNNNNGG	1 cut(s)	480
AgsI	TTSAA	1 cut(s)	737
AjnI	CCWGG	4 cut(s)	466, 473, 487, 891
AjuI	GAANNNNNNNTTGG	4 cut(s)	463, 495, 576, 608
AleI	CACNNNNGTG	1 cut(s)	18
AluBI	AGCT	5 cut(s)	275, 362, 683, 929, 935
AluI	AGCT	5 cut(s)	275, 362, 683, 929, 935
Alw26I	GTCTC	4 cut(s)	88, 552, 785, 800
Ama87I	CYCGRG	1 cut(s)	16
AoxI	GGCC	1 cut(s)	108
ApeKI	GCWGC	3 cut(s)	162, 196, 926
ApoI	RAATTY	3 cut(s)	300, 375, 746
AspLEI	GCGC	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	643
AsuC2I	CCSGG	2 cut(s)	17, 18
AsuHPI	GGTGA	4 cut(s)	78, 295, 448, 608
AvaI	CYCGRG	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	643
BaeGI	GKGCMC	2 cut(s)	15, 388
BanI	GGYRCC	3 cut(s)	12, 147, 383
BbsI	GAAGAC	1 cut(s)	71
BbvCI	CCTCAGC	1 cut(s)	579
BbvI	GCAGC	3 cut(s)	149, 208, 938
BccI	CCATC	3 cut(s)	253, 593, 830
BceAI	ACGGC	1 cut(s)	780
BcgI	CGANNNNNNTGC	4 cut(s)	115, 149, 258, 292
BciT130I	CCWGG	4 cut(s)	468, 475, 489, 893
BciVI	GTATCC	1 cut(s)	115
BclI	TGATCA	2 cut(s)	285, 861
BcnI	CCSGG	2 cut(s)	17, 18
BcoDI	GTCTC	4 cut(s)	88, 552, 785, 800
BfaI	CTAG	2 cut(s)	24, 372
BfoI	RGCGCY	1 cut(s)	151
BfuI	GTATCC	1 cut(s)	115
BglII	AGATCT	1 cut(s)	589
BisI	GCNGC	4 cut(s)	163, 197, 924, 927
BlpI	GCTNAGC	1 cut(s)	684
BlsI	GCNGC	4 cut(s)	164, 198, 925, 928
Bme1390I	CCNGG	6 cut(s)	17, 18, 468, 475, 489, 893
Bme18I	GGWCC	1 cut(s)	643
BmeT110I	CYCGRG	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	643
BmiI	GGNNCC	4 cut(s)	14, 149, 385, 472
BmrFI	CCNGG	6 cut(s)	17, 18, 468, 475, 489, 893
BmsI	GCATC	3 cut(s)	176, 474, 612
BpiI	GAAGAC	1 cut(s)	71
BplI	GAGNNNNNCTC	2 cut(s)	173, 205
BpmI	CTGGAG	2 cut(s)	438, 510
Bpu10I	CCTNAGC	1 cut(s)	579
Bpu1102I	GCTNAGC	1 cut(s)	684
BpuEI	CTTGAG	1 cut(s)	915
BpuMI	CCSGG	2 cut(s)	17, 18
BsaHI	GRCGYC	1 cut(s)	148
BsaI	GGTCTC	1 cut(s)	800
BsaJI	CCNNGG	2 cut(s)	16, 551
BsaXI	ACNNNNNCTCC	2 cut(s)	448, 478
Bsc4I	CCNNNNNNNGG	1 cut(s)	480
Bse118I	RCCGGY	1 cut(s)	144
Bse1I	ACTGG	1 cut(s)	421
BseBI	CCWGG	4 cut(s)	468, 475, 489, 893
BseDI	CCNNGG	2 cut(s)	16, 551
BseGI	GGATG	3 cut(s)	184, 489, 841
BseLI	CCNNNNNNNGG	1 cut(s)	480
BseMII	CTCAG	3 cut(s)	369, 570, 698
BseNI	ACTGG	1 cut(s)	421
BseRI	GAGGAG	1 cut(s)	927
BseSI	GKGCMC	2 cut(s)	15, 388
BseXI	GCAGC	3 cut(s)	149, 208, 938
Bsh1236I	CGCG	1 cut(s)	280
BshFI	GGCC	1 cut(s)	110
BshNI	GGYRCC	3 cut(s)	12, 147, 383
BsiHKCI	CYCGRG	1 cut(s)	16
BsiSI	CCGG	3 cut(s)	17, 145, 498
BslI	CCNNNNNNNGG	1 cut(s)	480
BsmAI	GTCTC	4 cut(s)	88, 552, 785, 800
BsmI	GAATGC	1 cut(s)	626
BsnI	GGCC	1 cut(s)	110
Bso31I	GGTCTC	1 cut(s)	800
BsoBI	CYCGRG	1 cut(s)	16
Bsp1286I	GDGCHC	2 cut(s)	15, 388
Bsp1407I	TGTACA	1 cut(s)	216
Bsp143I	GATC	3 cut(s)	285, 589, 861
Bsp1720I	GCTNAGC	1 cut(s)	684
BspACI	CCGC	3 cut(s)	280, 369, 923
BspANI	GGCC	1 cut(s)	110
BspCNI	CTCAG	3 cut(s)	368, 571, 697
BspFNI	CGCG	1 cut(s)	280
BspLI	GGNNCC	4 cut(s)	14, 149, 385, 472
BspT107I	GGYRCC	3 cut(s)	12, 147, 383
BspTNI	GGTCTC	1 cut(s)	800
BsrFI	RCCGGY	1 cut(s)	144
BsrGI	TGTACA	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	421
BssAI	RCCGGY	1 cut(s)	144
BssECI	CCNNGG	2 cut(s)	16, 551
BssMI	GATC	3 cut(s)	285, 589, 861
BssNI	GRCGYC	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	551
Bst2UI	CCWGG	4 cut(s)	468, 475, 489, 893
Bst4CI	ACNGT	4 cut(s)	132, 348, 673, 814
Bst6I	CTCTTC	1 cut(s)	643
BstACI	GRCGYC	1 cut(s)	148
BstAUI	TGTACA	1 cut(s)	216
BstC8I	GCNNGC	2 cut(s)	146, 664
BstDEI	CTNAG	3 cut(s)	355, 579, 684
BstF5I	GGATG	3 cut(s)	184, 489, 841
BstFNI	CGCG	1 cut(s)	280
BstH2I	RGCGCY	1 cut(s)	151
BstHHI	GCGC	1 cut(s)	150
BstKTI	GATC	3 cut(s)	288, 592, 864
BstMAI	GTCTC	4 cut(s)	88, 552, 785, 800
BstMBI	GATC	3 cut(s)	285, 589, 861
BstMWI	GCNNNNNNNGC	4 cut(s)	368, 484, 749, 932
BstNI	CCWGG	4 cut(s)	468, 475, 489, 893
BstSCI	CCNGG	6 cut(s)	15, 16, 466, 473, 487, 891
BstSLI	GKGCMC	2 cut(s)	15, 388
BstUI	CGCG	1 cut(s)	280
BstV1I	GCAGC	3 cut(s)	149, 208, 938
BstV2I	GAAGAC	1 cut(s)	71
BstX2I	RGATCY	1 cut(s)	589
BstYI	RGATCY	1 cut(s)	589
BsuI	GTATCC	1 cut(s)	115
BsuRI	GGCC	1 cut(s)	110
BtgZI	GCGATG	1 cut(s)	199
BtsCI	GGATG	3 cut(s)	184, 489, 841
BtsIMutI	CAGTG	1 cut(s)	810
Cac8I	GCNNGC	2 cut(s)	146, 664
CfoI	GCGC	1 cut(s)	150
Cfr10I	RCCGGY	1 cut(s)	144
Cfr13I	GGNCC	1 cut(s)	643
Cfr9I	CCCGGG	1 cut(s)	16
Csp6I	GTAC	2 cut(s)	217, 349
CviAII	CATG	4 cut(s)	60, 251, 325, 712
CviQI	GTAC	2 cut(s)	217, 349
DdeI	CTNAG	3 cut(s)	355, 579, 684
DinI	GGCGCC	1 cut(s)	149
DpnI	GATC	3 cut(s)	287, 591, 863
DpnII	GATC	3 cut(s)	285, 589, 861
DraIII	CACNNNGTG	1 cut(s)	45
Eam1104I	CTCTTC	1 cut(s)	643
EarI	CTCTTC	1 cut(s)	643
Eco130I	CCWWGG	1 cut(s)	551
Eco147I	AGGCCT	1 cut(s)	110
Eco31I	GGTCTC	1 cut(s)	800
Eco47I	GGWCC	1 cut(s)	643
Eco88I	CYCGRG	1 cut(s)	16
EcoRI	GAATTC	2 cut(s)	300, 375
EcoRII	CCWGG	4 cut(s)	466, 473, 487, 891
EcoT14I	CCWWGG	1 cut(s)	551
EgeI	GGCGCC	1 cut(s)	149
EheI	GGCGCC	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	551
FaeI	CATG	4 cut(s)	63, 254, 328, 715
FalI	AAGNNNNNCTT	4 cut(s)	195, 227, 576, 608
FatI	CATG	4 cut(s)	59, 250, 324, 711
FauI	CCCGC	2 cut(s)	273, 376
FbaI	TGATCA	2 cut(s)	285, 861
Fnu4HI	GCNGC	4 cut(s)	163, 197, 924, 927
FokI	GGATG	3 cut(s)	191, 496, 848
Fsp4HI	GCNGC	4 cut(s)	163, 197, 924, 927
FspBI	CTAG	2 cut(s)	24, 372
GlaI	GCGC	1 cut(s)	149
GluI	GCNGC	4 cut(s)	163, 197, 924, 927
GsuI	CTGGAG	2 cut(s)	438, 510
HaeII	RGCGCY	1 cut(s)	151
HaeIII	GGCC	1 cut(s)	110
HapII	CCGG	3 cut(s)	17, 145, 498
HhaI	GCGC	1 cut(s)	150
Hin1I	GRCGYC	1 cut(s)	148
Hin1II	CATG	4 cut(s)	63, 254, 328, 715
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	360
HinfI	GANTC	4 cut(s)	463, 545, 654, 956
HpaII	CCGG	3 cut(s)	17, 145, 498
HphI	GGTGA	4 cut(s)	78, 295, 448, 608
Hpy166II	GTNNAC	2 cut(s)	39, 217
Hpy188I	TCNGA	3 cut(s)	121, 358, 647
Hpy188III	TCNNGA	1 cut(s)	542
Hpy8I	GTNNAC	2 cut(s)	39, 217
HpyAV	CCTTC	4 cut(s)	99, 463, 578, 846
HpyCH4III	ACNGT	4 cut(s)	132, 348, 673, 814
HpyCH4V	TGCA	6 cut(s)	165, 243, 269, 398, 626, 662
HpyF10VI	GCNNNNNNNGC	4 cut(s)	368, 484, 749, 932
HpyF3I	CTNAG	3 cut(s)	355, 579, 684
Hsp92I	GRCGYC	1 cut(s)	148
Hsp92II	CATG	4 cut(s)	63, 254, 328, 715
HspAI	GCGC	1 cut(s)	148
KasI	GGCGCC	1 cut(s)	147
KroI	GCCGGC	1 cut(s)	144
KroNI	GCCGGC	1 cut(s)	146
Ksp22I	TGATCA	2 cut(s)	285, 861
Kzo9I	GATC	3 cut(s)	285, 589, 861
LmnI	GCTCC	1 cut(s)	940
Lsp1109I	GCAGC	3 cut(s)	149, 208, 938
LweI	GCATC	3 cut(s)	176, 474, 612
MaeI	CTAG	2 cut(s)	24, 372
MaeIII	GTNAC	1 cut(s)	534
MalI	GATC	3 cut(s)	287, 591, 863
MboI	GATC	3 cut(s)	285, 589, 861
MboII	GAAGA	4 cut(s)	76, 224, 309, 660
MfeI	CAATTG	1 cut(s)	166
MflI	RGATCY	1 cut(s)	589
MhlI	GDGCHC	2 cut(s)	15, 388
Mly113I	GGCGCC	1 cut(s)	148
MlyI	GAGTC	3 cut(s)	457, 554, 648
MmeI	TCCRAC	4 cut(s)	29, 461, 780, 856
MroNI	GCCGGC	1 cut(s)	144
MslI	CAYNNNNRTG	3 cut(s)	18, 710, 869
MspI	CCGG	3 cut(s)	17, 145, 498
MspR9I	CCNGG	6 cut(s)	17, 18, 468, 475, 489, 893
MunI	CAATTG	1 cut(s)	166
Mva1269I	GAATGC	1 cut(s)	626
MvaI	CCWGG	4 cut(s)	468, 475, 489, 893
MvnI	CGCG	1 cut(s)	280
MwoI	GCNNNNNNNGC	4 cut(s)	368, 484, 749, 932
NaeI	GCCGGC	1 cut(s)	146
NarI	GGCGCC	1 cut(s)	148
NciI	CCSGG	2 cut(s)	17, 18
NdeII	GATC	3 cut(s)	285, 589, 861
NgoMIV	GCCGGC	1 cut(s)	144
NlaIII	CATG	4 cut(s)	63, 254, 328, 715
NlaIV	GGNNCC	4 cut(s)	14, 149, 385, 472
NmuCI	GTSAC	1 cut(s)	534
OliI	CACNNNNGTG	1 cut(s)	18
PceI	AGGCCT	1 cut(s)	110
PctI	GAATGC	1 cut(s)	626
PdiI	GCCGGC	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	956
PfoI	TCCNGGA	1 cut(s)	466
PkrI	GCNGC	4 cut(s)	164, 198, 925, 928
PleI	GAGTC	3 cut(s)	457, 553, 648
PluTI	GGCGCC	1 cut(s)	151
PpsI	GAGTC	3 cut(s)	457, 553, 648
Psp6I	CCWGG	4 cut(s)	466, 473, 487, 891
PspGI	CCWGG	4 cut(s)	466, 473, 487, 891
PspN4I	GGNNCC	4 cut(s)	14, 149, 385, 472
PspPI	GGNCC	1 cut(s)	643
PsrI	GAACNNNNNNTAC	2 cut(s)	486, 518
PsuI	RGATCY	1 cut(s)	589
RsaI	GTAC	2 cut(s)	218, 350
RsaNI	GTAC	2 cut(s)	217, 349
RseI	CAYNNNNRTG	3 cut(s)	18, 710, 869
SatI	GCNGC	4 cut(s)	163, 197, 924, 927
Sau3AI	GATC	3 cut(s)	285, 589, 861
Sau96I	GGNCC	1 cut(s)	643
SchI	GAGTC	3 cut(s)	457, 554, 648
ScrFI	CCNGG	6 cut(s)	17, 18, 468, 475, 489, 893
SduI	GDGCHC	2 cut(s)	15, 388
SfaNI	GCATC	3 cut(s)	176, 474, 612
SfoI	GGCGCC	1 cut(s)	149
SinI	GGWCC	1 cut(s)	643
SmaI	CCCGGG	1 cut(s)	18
SmiMI	CAYNNNNRTG	3 cut(s)	18, 710, 869
SmlI	CTYRAG	1 cut(s)	930
SmoI	CTYRAG	1 cut(s)	930
SseBI	AGGCCT	1 cut(s)	110
SsiI	CCGC	3 cut(s)	280, 369, 923
SspDI	GGCGCC	1 cut(s)	147
SspMI	CTAG	2 cut(s)	24, 372
StuI	AGGCCT	1 cut(s)	110
StyD4I	CCNGG	6 cut(s)	15, 16, 466, 473, 487, 891
StyI	CCWWGG	1 cut(s)	551
TaaI	ACNGT	4 cut(s)	132, 348, 673, 814
TaqI	TCGA	1 cut(s)	379
TatI	WGTACW	1 cut(s)	216
TauI	GCSGC	1 cut(s)	926
TfiI	GAWTC	1 cut(s)	956
TscAI	CASTG	1 cut(s)	817
TseFI	GTSAC	1 cut(s)	534
TseI	GCWGC	3 cut(s)	162, 196, 926
Tsp45I	GTSAC	1 cut(s)	534
TspMI	CCCGGG	1 cut(s)	16
TspRI	CASTG	1 cut(s)	817
VpaK11BI	GGWCC	1 cut(s)	643
XapI	RAATTY	3 cut(s)	300, 375, 746
XmaI	CCCGGG	1 cut(s)	16
XspI	CTAG	2 cut(s)	24, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.