Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000711

Physical Location & Seq

Genomic Coordinates Forward (+)

61726230 .. 61726973

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG342600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGATATTGGCCGGAGAAAGTCAATCTTGTGTGCAGATTTTGTGTTCTTCCTTGGTGCAATAGTCATGACTGTTGCACCAGCTCCGTGGGTGATCATAATTGGAAGAATTCTGGTTGGTTTGGGAGTGGGTATGGCTTCTATGACCTCACCACTATACATCTCAAAAGCTTATCCTGTTAGAATCCGAGGTGCTCTTGCTAGTACAAATGGTTTTCTAACTACTGGAGGTCAATTTTTGTCATACCTCATCAATCTTGCCTTCACCAAGGCTCCTGGAACCTGGCGTTGGATGCTTGGAGTAGCCGGAGTTCCTGCTGTGGTTCAGTTTGGATTGATGTGGTCACTCCCAGAGTCTCCAAGGTGGCTCTACAGAAAGAATAAGGTAAATGAAGCCAGGGCTATCTTAGAGAAAATTTATCCTGCGAATGAGGTTGAGGATGAAATGAAAGCATTGCACGAATCTGTTGAAATGGAAAAGGCCGAGGAAGGAGATGTTGGTGATGGCATCGTAGCAAAACTAAAGGGTGCATTCAACAACCCTGTGGTCCGAAGAGGACTCTGTGCAGGCATAACAGTCCCAAGTAGGTCAGCAATTTGTGGATATCAACACTGTCATGTATTACAGCCCAACCATTGTTCAGTTTGCAGGATTTGCTTCCAACCAAACAGCTTTAGCACTTCCACTCATCACTTCTGGTCTCAATGTTGTTGGCACTGTAATCAGTATGTGCTTTGTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

247

Amino Acids

27.24

Weight (kDa)

8.89

Isoelectric Point (pI)

39.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	3 - 202	5.8e-48	Sugar (and other) transporter
MFS_1	PF07690	3 - 140	1.6e-14	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35740 AT4G16480 AT4G16480 AT4G16480
fragaria_vesca	FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00760
malus_domestica	MD05G1108700.v1.1 MD05G1359700.v1.1 MD05G1359900.v1.1 MD10G1335300.v1.1 MD10G1335500.v1.1
prunus_persica	Prupe.4G008300_v2.0.a1 Prupe.4G008300_v2.0.a1 Prupe.4G008400_v2.0.a1
pyrus_communis	pycom05g32480 pycom05g32490 pycom10g28510
rosa_chinensis	RchiOBHm_Chr1g0370501 RchiOBHm_Chr4g0424641 RchiOBHm_Chr5g0000981 RchiOBHm_Chr5g0001001 RchiOBHm_Chr7g0190531
rosa_laevigata	RLG00000004519 RLG00000030911 RLG00000030912
rosa_multiflora	Rmu_co8357507.1_g000001 Rmu_co8503263.1_g000001 Rmu_sc0000255.1_g000023 Rmu_sc0000255.1_g000024 Rmu_sc0002558.1_g000005 Rmu_sc0007329.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075280 Rroxscaffold_1G00075290 Rroxscaffold_3G00264530
rosa_rugosa	Rorug04G0198700 Rorug04G0388100 Rorug04G0388200 Rorug04G0388300 Rorug04G0388400 Rorug04G0388500 Rorug04G0388600 Rorug04G0388700 Rorug04G0388800
rosa_samantha	Rh1AG366200 Rh1BG329000 Rh1CG342600 Rh1DG359300 Rh1DG360000 Rh4AG255600 Rh4BG261000 Rh4CG272100 Rh4DG255600 Rh5AG007800 Rh5AG007900 Rh5BG010000 Rh5BG010100 Rh5CG008500 Rh5CG008600 Rh5DG008500 Rh5DG008600
rosa_wichuraiana	Rw1G032250 Rw5G000810 Rw5G000820 Rw7G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	10
AcsI	RAATTY	2 cut(s)	108, 414
AfaI	GTAC	1 cut(s)	205
AfiI	CCNNNNNNNGG	1 cut(s)	288
AgsI	TTSAA	2 cut(s)	470, 535
AjnI	CCWGG	3 cut(s)	274, 281, 395
AjuI	GAANNNNNNNTTGG	4 cut(s)	271, 303, 480, 512
AluBI	AGCT	3 cut(s)	83, 170, 672
AluI	AGCT	3 cut(s)	83, 170, 672
Alw21I	GWGCWC	1 cut(s)	196
Alw26I	GTCTC	2 cut(s)	360, 705
AoxI	GGCC	2 cut(s)	10, 480
ApoI	RAATTY	2 cut(s)	108, 414
AspS9I	GGNCC	1 cut(s)	547
AsuHPI	GGTGA	4 cut(s)	103, 141, 256, 512
AvaII	GGWCC	1 cut(s)	547
Bbv12I	GWGCWC	1 cut(s)	196
BccI	CCATC	1 cut(s)	497
BciT130I	CCWGG	3 cut(s)	276, 283, 397
BclI	TGATCA	1 cut(s)	93
BcoDI	GTCTC	2 cut(s)	360, 705
BfaI	CTAG	1 cut(s)	201
BfmI	CTRYAG	1 cut(s)	370
Bme1390I	CCNGG	3 cut(s)	276, 283, 397
Bme18I	GGWCC	1 cut(s)	547
BmgT120I	GGNCC	1 cut(s)	547
BmiI	GGNNCC	2 cut(s)	273, 280
BmrFI	CCNGG	3 cut(s)	276, 283, 397
BmsI	GCATC	2 cut(s)	282, 516
BpmI	CTGGAG	1 cut(s)	246
BsaI	GGTCTC	1 cut(s)	705
BsaJI	CCNNGG	7 cut(s)	52, 86, 187, 267, 359, 396, 483
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bsc4I	CCNNNNNNNGG	1 cut(s)	288
Bse1I	ACTGG	1 cut(s)	229
Bse3DI	GCAATG	1 cut(s)	452
BseBI	CCWGG	3 cut(s)	276, 283, 397
BseDI	CCNNGG	7 cut(s)	52, 86, 187, 267, 359, 396, 483
BseGI	GGATG	2 cut(s)	297, 445
BseLI	CCNNNNNNNGG	1 cut(s)	288
BseMI	GCAATG	1 cut(s)	452
BseNI	ACTGG	1 cut(s)	229
BsgI	GTGCAG	2 cut(s)	54, 585
BshFI	GGCC	2 cut(s)	12, 482
BsiHKAI	GWGCWC	1 cut(s)	196
BsiSI	CCGG	2 cut(s)	13, 306
BslFI	GGGAC	1 cut(s)	563
BslI	CCNNNNNNNGG	1 cut(s)	288
BsmAI	GTCTC	2 cut(s)	360, 705
BsmFI	GGGAC	1 cut(s)	563
BsmI	GAATGC	1 cut(s)	530
BsnI	GGCC	2 cut(s)	12, 482
Bso31I	GGTCTC	1 cut(s)	705
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	93
BspANI	GGCC	2 cut(s)	12, 482
BspHI	TCATGA	1 cut(s)	66
BspLI	GGNNCC	2 cut(s)	273, 280
BspTNI	GGTCTC	1 cut(s)	705
BsrDI	GCAATG	1 cut(s)	452
BsrI	ACTGG	1 cut(s)	229
BssECI	CCNNGG	7 cut(s)	52, 86, 187, 267, 359, 396, 483
BssMI	GATC	1 cut(s)	93
BssT1I	CCWWGG	3 cut(s)	52, 267, 359
Bst2UI	CCWGG	3 cut(s)	276, 283, 397
Bst4CI	ACNGT	4 cut(s)	73, 577, 614, 719
Bst6I	CTCTTC	1 cut(s)	547
BstAPI	GCANNNNNTGC	1 cut(s)	654
BstC8I	GCNNGC	1 cut(s)	568
BstDEI	CTNAG	1 cut(s)	406
BstDSI	CCRYGG	1 cut(s)	86
BstF5I	GGATG	2 cut(s)	297, 445
BstKTI	GATC	1 cut(s)	96
BstMAI	GTCTC	2 cut(s)	360, 705
BstMBI	GATC	1 cut(s)	93
BstMWI	GCNNNNNNNGC	2 cut(s)	292, 654
BstNI	CCWGG	3 cut(s)	276, 283, 397
BstSCI	CCNGG	3 cut(s)	274, 281, 395
BstSFI	CTRYAG	1 cut(s)	370
BstXI	CCANNNNNNTGG	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	12, 482
BtgI	CCRYGG	1 cut(s)	86
BtsCI	GGATG	2 cut(s)	297, 445
BtsIMutI	CAGTG	2 cut(s)	610, 715
Cac8I	GCNNGC	1 cut(s)	568
CciI	TCATGA	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	547
Csp6I	GTAC	1 cut(s)	204
CviAII	CATG	2 cut(s)	67, 617
CviQI	GTAC	1 cut(s)	204
DdeI	CTNAG	1 cut(s)	406
DpnI	GATC	1 cut(s)	95
DpnII	GATC	1 cut(s)	93
EaeI	YGGCCR	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	547
EarI	CTCTTC	1 cut(s)	547
Eco130I	CCWWGG	3 cut(s)	52, 267, 359
Eco31I	GGTCTC	1 cut(s)	705
Eco32I	GATATC	1 cut(s)	605
Eco47I	GGWCC	1 cut(s)	547
EcoRI	GAATTC	1 cut(s)	108
EcoRII	CCWGG	3 cut(s)	274, 281, 395
EcoRV	GATATC	1 cut(s)	605
EcoT14I	CCWWGG	3 cut(s)	52, 267, 359
ErhI	CCWWGG	3 cut(s)	52, 267, 359
FaeI	CATG	2 cut(s)	70, 620
FaiI	YATR	9 cut(s)	68, 98, 134, 143, 157, 244, 572, 618, 729
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	2 cut(s)	66, 616
FbaI	TGATCA	1 cut(s)	93
FokI	GGATG	2 cut(s)	304, 452
FspBI	CTAG	1 cut(s)	201
GsuI	CTGGAG	1 cut(s)	246
HaeIII	GGCC	2 cut(s)	12, 482
HapII	CCGG	2 cut(s)	13, 306
Hin1II	CATG	2 cut(s)	70, 620
HindIII	AAGCTT	1 cut(s)	168
HinfI	GANTC	4 cut(s)	183, 353, 461, 558
HpaII	CCGG	2 cut(s)	13, 306
HphI	GGTGA	4 cut(s)	103, 141, 256, 512
Hpy188I	TCNGA	2 cut(s)	188, 551
Hpy188III	TCNNGA	1 cut(s)	67
HpyAV	CCTTC	2 cut(s)	271, 482
HpyCH4III	ACNGT	4 cut(s)	73, 577, 614, 719
HpyCH4V	TGCA	7 cut(s)	35, 59, 77, 457, 530, 566, 648
HpyF10VI	GCNNNNNNNGC	2 cut(s)	292, 654
HpyF3I	CTNAG	1 cut(s)	406
Hsp92II	CATG	2 cut(s)	70, 620
Ksp22I	TGATCA	1 cut(s)	93
Kzo9I	GATC	1 cut(s)	93
LmnI	GCTCC	2 cut(s)	88, 277
LweI	GCATC	2 cut(s)	282, 516
MaeI	CTAG	1 cut(s)	201
MaeIII	GTNAC	1 cut(s)	342
MalI	GATC	1 cut(s)	95
MboI	GATC	1 cut(s)	93
MboII	GAAGA	3 cut(s)	40, 117, 564
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	5 cut(s)	99, 108, 233, 414, 594
MlyI	GAGTC	2 cut(s)	362, 552
MmeI	TCCRAC	2 cut(s)	269, 685
MnlI	CCTC	8 cut(s)	157, 182, 221, 257, 424, 430, 478, 548
MslI	CAYNNNNRTG	1 cut(s)	615
MspI	CCGG	2 cut(s)	13, 306
MspR9I	CCNGG	3 cut(s)	276, 283, 397
Mva1269I	GAATGC	1 cut(s)	530
MvaI	CCWGG	3 cut(s)	276, 283, 397
MwoI	GCNNNNNNNGC	2 cut(s)	292, 654
NdeII	GATC	1 cut(s)	93
NlaIII	CATG	2 cut(s)	70, 620
NlaIV	GGNNCC	2 cut(s)	273, 280
NmeAIII	GCCGAG	1 cut(s)	508
NmuCI	GTSAC	1 cut(s)	342
PagI	TCATGA	1 cut(s)	66
PctI	GAATGC	1 cut(s)	530
PfeI	GAWTC	2 cut(s)	183, 461
PfoI	TCCNGGA	1 cut(s)	274
PleI	GAGTC	2 cut(s)	361, 552
PpsI	GAGTC	2 cut(s)	361, 552
Psp6I	CCWGG	3 cut(s)	274, 281, 395
PspGI	CCWGG	3 cut(s)	274, 281, 395
PspN4I	GGNNCC	2 cut(s)	273, 280
PspPI	GGNCC	1 cut(s)	547
PsrI	GAACNNNNNNTAC	2 cut(s)	294, 326
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
RseI	CAYNNNNRTG	1 cut(s)	615
Sau3AI	GATC	1 cut(s)	93
Sau96I	GGNCC	1 cut(s)	547
SchI	GAGTC	2 cut(s)	362, 552
ScrFI	CCNGG	3 cut(s)	276, 283, 397
SduI	GDGCHC	1 cut(s)	196
SfaNI	GCATC	2 cut(s)	282, 516
SfcI	CTRYAG	1 cut(s)	370
SinI	GGWCC	1 cut(s)	547
SmiMI	CAYNNNNRTG	1 cut(s)	615
Sse9I	AATT	5 cut(s)	99, 108, 233, 414, 594
SspMI	CTAG	1 cut(s)	201
StyD4I	CCNGG	3 cut(s)	274, 281, 395
StyI	CCWWGG	3 cut(s)	52, 267, 359
TaaI	ACNGT	4 cut(s)	73, 577, 614, 719
TasI	AATT	5 cut(s)	99, 108, 233, 414, 594
TatI	WGTACW	1 cut(s)	203
TfiI	GAWTC	2 cut(s)	183, 461
TscAI	CASTG	2 cut(s)	617, 722
TseFI	GTSAC	1 cut(s)	342
Tsp45I	GTSAC	1 cut(s)	342
TspDTI	ATGAA	3 cut(s)	405, 456, 461
TspGWI	ACGGA	1 cut(s)	75
TspRI	CASTG	2 cut(s)	617, 722
VpaK11BI	GGWCC	1 cut(s)	547
XapI	RAATTY	2 cut(s)	108, 414
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.