Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000711

Physical Location & Seq

Genomic Coordinates Forward (+)

47125272 .. 47125656

Gene Structure 385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG255600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGTGGAAGGGGGAGCACACCCATCTAGTAGGACAGAATTCACAGAATGCTGGAAGACCACATGGCGAACGCCTTACATTATGCGCCTTGCGCTCTCTGCTGGCATTGGAGGCCTCTTTTTTGAATATGACATAGGTGTCATTTCTGGGGCGCTGCTATACATTCGTGAGGACTTTGACGTAGTTGACAAGAAAACTTGGTTGCAAGAAACCATTGTGAGTATGGCAGTTGCAGGAACTATCATTGGCGCTGCAATTGAAGGATGGATGAACGATGCCCTCGGCCGCAAAAAATCAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

100

Amino Acids

11.06

Weight (kDa)

5.28

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	31 - 100	3.4e-09	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35740 AT4G16480 AT4G16480 AT4G16480
fragaria_vesca	FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00760
malus_domestica	MD05G1108700.v1.1 MD05G1359700.v1.1 MD05G1359900.v1.1 MD10G1335300.v1.1 MD10G1335500.v1.1
prunus_persica	Prupe.4G008300_v2.0.a1 Prupe.4G008300_v2.0.a1 Prupe.4G008400_v2.0.a1
pyrus_communis	pycom05g32480 pycom05g32490 pycom10g28510
rosa_chinensis	RchiOBHm_Chr1g0370501 RchiOBHm_Chr4g0424641 RchiOBHm_Chr5g0000981 RchiOBHm_Chr5g0001001 RchiOBHm_Chr7g0190531
rosa_laevigata	RLG00000004519 RLG00000030911 RLG00000030912
rosa_multiflora	Rmu_co8357507.1_g000001 Rmu_co8503263.1_g000001 Rmu_sc0000255.1_g000023 Rmu_sc0000255.1_g000024 Rmu_sc0002558.1_g000005 Rmu_sc0007329.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075280 Rroxscaffold_1G00075290 Rroxscaffold_3G00264530
rosa_rugosa	Rorug04G0198700 Rorug04G0388100 Rorug04G0388200 Rorug04G0388300 Rorug04G0388400 Rorug04G0388500 Rorug04G0388600 Rorug04G0388700 Rorug04G0388800
rosa_samantha	Rh1AG366200 Rh1BG329000 Rh1CG342600 Rh1DG359300 Rh1DG360000 Rh4AG255600 Rh4BG261000 Rh4CG272100 Rh4DG255600 Rh5AG007800 Rh5AG007900 Rh5BG010000 Rh5BG010100 Rh5CG008500 Rh5CG008600 Rh5DG008500 Rh5DG008600
rosa_wichuraiana	Rw1G032250 Rw5G000810 Rw5G000820 Rw7G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	137
AciI	CCGC	1 cut(s)	286
AcoI	YGGCCR	1 cut(s)	283
AcsI	RAATTY	1 cut(s)	38
AgsI	TTSAA	2 cut(s)	125, 260
Alw21I	GWGCWC	1 cut(s)	19
AoxI	GGCC	2 cut(s)	112, 283
ApeKI	GCWGC	2 cut(s)	154, 251
ApoI	RAATTY	1 cut(s)	38
AspLEI	GCGC	4 cut(s)	87, 94, 154, 251
BbsI	GAAGAC	1 cut(s)	62
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	2 cut(s)	141, 238
BccI	CCATC	2 cut(s)	31, 258
BfaI	CTAG	1 cut(s)	27
BfoI	RGCGCY	2 cut(s)	155, 252
BisI	GCNGC	3 cut(s)	155, 252, 286
BlsI	GCNGC	3 cut(s)	156, 253, 287
BmsI	GCATC	1 cut(s)	265
BpiI	GAAGAC	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	280
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	2 cut(s)	269, 273
BseX3I	CGGCCG	1 cut(s)	283
BseXI	GCAGC	2 cut(s)	141, 238
Bsh1285I	CGRYCG	1 cut(s)	286
BshFI	GGCC	2 cut(s)	114, 285
BsiEI	CGRYCG	1 cut(s)	286
BsiHKAI	GWGCWC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	53
BsnI	GGCC	2 cut(s)	114, 285
Bsp1286I	GDGCHC	1 cut(s)	19
BspACI	CCGC	1 cut(s)	286
BspANI	GGCC	2 cut(s)	114, 285
BssECI	CCNNGG	1 cut(s)	280
BstC8I	GCNNGC	1 cut(s)	103
BstF5I	GGATG	2 cut(s)	269, 273
BstH2I	RGCGCY	2 cut(s)	155, 252
BstHHI	GCGC	4 cut(s)	87, 94, 154, 251
BstMCI	CGRYCG	1 cut(s)	286
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 98, 111
BstV1I	GCAGC	2 cut(s)	141, 238
BstV2I	GAAGAC	1 cut(s)	62
BstZI	CGGCCG	1 cut(s)	283
BsuRI	GGCC	2 cut(s)	114, 285
BtsCI	GGATG	2 cut(s)	269, 273
Cac8I	GCNNGC	1 cut(s)	103
CfoI	GCGC	4 cut(s)	87, 94, 154, 251
CviAII	CATG	1 cut(s)	63
CviJI	RGCY	2 cut(s)	114, 285
CviKI_1	RGCY	2 cut(s)	114, 285
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
EaeI	YGGCCR	1 cut(s)	283
EagI	CGGCCG	1 cut(s)	283
EclXI	CGGCCG	1 cut(s)	283
Eco147I	AGGCCT	1 cut(s)	114
Eco52I	CGGCCG	1 cut(s)	283
EcoRI	GAATTC	1 cut(s)	38
FaeI	CATG	1 cut(s)	66
FaiI	YATR	7 cut(s)	64, 83, 129, 134, 160, 224, 301
FatI	CATG	1 cut(s)	62
Fnu4HI	GCNGC	3 cut(s)	155, 252, 286
FokI	GGATG	2 cut(s)	276, 280
Fsp4HI	GCNGC	3 cut(s)	155, 252, 286
FspBI	CTAG	1 cut(s)	27
GlaI	GCGC	4 cut(s)	86, 93, 153, 250
GluI	GCNGC	3 cut(s)	155, 252, 286
HaeII	RGCGCY	2 cut(s)	155, 252
HaeIII	GGCC	2 cut(s)	114, 285
HhaI	GCGC	4 cut(s)	87, 94, 154, 251
Hin1II	CATG	1 cut(s)	66
Hin6I	GCGC	4 cut(s)	85, 92, 152, 249
HinP1I	GCGC	4 cut(s)	85, 92, 152, 249
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188III	TCNNGA	1 cut(s)	167
Hpy8I	GTNNAC	1 cut(s)	187
HpyAV	CCTTC	1 cut(s)	254
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	3 cut(s)	205, 233, 254
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 98, 111
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	1 cut(s)	66
HspAI	GCGC	4 cut(s)	85, 92, 152, 249
LmnI	GCTCC	1 cut(s)	14
LpnPI	CCDG	4 cut(s)	37, 87, 132, 219
Lsp1109I	GCAGC	2 cut(s)	141, 238
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	1 cut(s)	180
MboII	GAAGA	1 cut(s)	67
MfeI	CAATTG	1 cut(s)	255
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	2 cut(s)	38, 255
MnlI	CCTC	4 cut(s)	104, 125, 163, 290
MunI	CAATTG	1 cut(s)	255
Mva1269I	GAATGC	1 cut(s)	53
MwoI	GCNNNNNNNGC	3 cut(s)	91, 98, 111
NlaIII	CATG	1 cut(s)	66
NmeAIII	GCCGAG	1 cut(s)	261
PceI	AGGCCT	1 cut(s)	114
PctI	GAATGC	1 cut(s)	53
PkrI	GCNGC	3 cut(s)	156, 253, 287
SatI	GCNGC	3 cut(s)	155, 252, 286
SduI	GDGCHC	1 cut(s)	19
SetI	ASST	2 cut(s)	139, 183
SfaNI	GCATC	1 cut(s)	265
Sse9I	AATT	2 cut(s)	38, 255
SseBI	AGGCCT	1 cut(s)	114
SsiI	CCGC	1 cut(s)	286
SspMI	CTAG	1 cut(s)	27
StuI	AGGCCT	1 cut(s)	114
TaiI	ACGT	1 cut(s)	183
TasI	AATT	2 cut(s)	38, 255
TauI	GCSGC	1 cut(s)	288
TseI	GCWGC	2 cut(s)	154, 251
TspDTI	ATGAA	1 cut(s)	284
XapI	RAATTY	1 cut(s)	38
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.