Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0000711

Physical Location & Seq

Genomic Coordinates Reverse (-)

31887974 .. 31889393

Gene Structure 1420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g32490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCTTCCATGACATCACCGCTCTACATCTCAGAAGCTTCTCCTGCTAGAATCCGAGGTGCCCTGGTCAGTACAAATGGTTTTCTAATCACTGGAGGACAGTTCTTGTCATACCTTATAAATCTTGCTTTCACCAAGGTTCCAGGAACATGGCGTTGGATGCTCGGCGTAGCAGGAGTTCCGGCTTTGGTACAATTTGTATTGATGTTGTCACTCCCAGAGTCTCCCAGATGGCTCTACAGAGAGAATAAGGCAGATGAGGCTAGGGCCATCTTAGAGAAAATTTATCCTGCCGAAGAAGTTGAGCGTGAAATGCAAGCCTTGCATGAATCCGTTCAAGCTGAAAAGGAGGGAGCAGCTGCTGGAGAAGGTGTGCTAGCAAGATTAAAGGGTGCCTTCAGCAACCCCGTTGTCCGAAGAGGACTCTATGCAGGCATCACTGTTCAAGTGGCACAGCAATTTGTCGGTATCAACACTGTCATGTACTACAGCCCAACTATTGTTCAGTTTGCCGGGTTTGCATCCAACCAGACGGCGTTGGCACTCTCTCTGGTCACTTCTGGACTCAACGTGGTTGGCACTGTCATCAGCATGTGCTTCATAGATAGATACGGAAGGAGAAGGCTGATGATTATCTCCATGATTGGAATCATCACTTGCTTGGTGGTGTTATCCGGGGTGTTTTTCCAGGCAGCATCTCATGCTCCACGCATCAGTAACTTGGAATCCACACATTTCGGTGGCAATTCTACATGCTCTGCTTATGTTTCTGATCCTAATCCCGGATCATGGAACTGCATGACGTGTTTGAAAGCAGAGTGTGGATTCTGTGCTGATAAAGTCAATTTTGCCCCGGGCGCTTGTTTGGCTTACAATGACAATATCAGGAGCTCATGTCGGGGAGAACATCGTGTGTGGTACACCAAAGGTTGTCCAAGCAAAGTCGGATTCTTCGCAGTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

322

Amino Acids

34.78

Weight (kDa)

8.79

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	2 - 231	8.5e-61	Sugar (and other) transporter
MFS_1	PF07690	8 - 230	1.9e-15	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35740 AT4G16480 AT4G16480 AT4G16480
fragaria_vesca	FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00760
malus_domestica	MD05G1108700.v1.1 MD05G1359700.v1.1 MD05G1359900.v1.1 MD10G1335300.v1.1 MD10G1335500.v1.1
prunus_persica	Prupe.4G008300_v2.0.a1 Prupe.4G008300_v2.0.a1 Prupe.4G008400_v2.0.a1
pyrus_communis	pycom05g32480 pycom05g32490 pycom10g28510
rosa_chinensis	RchiOBHm_Chr1g0370501 RchiOBHm_Chr4g0424641 RchiOBHm_Chr5g0000981 RchiOBHm_Chr5g0001001 RchiOBHm_Chr7g0190531
rosa_laevigata	RLG00000004519 RLG00000030911 RLG00000030912
rosa_multiflora	Rmu_co8357507.1_g000001 Rmu_co8503263.1_g000001 Rmu_sc0000255.1_g000023 Rmu_sc0000255.1_g000024 Rmu_sc0002558.1_g000005 Rmu_sc0007329.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075280 Rroxscaffold_1G00075290 Rroxscaffold_3G00264530
rosa_rugosa	Rorug04G0198700 Rorug04G0388100 Rorug04G0388200 Rorug04G0388300 Rorug04G0388400 Rorug04G0388500 Rorug04G0388600 Rorug04G0388700 Rorug04G0388800
rosa_samantha	Rh1AG366200 Rh1BG329000 Rh1CG342600 Rh1DG359300 Rh1DG360000 Rh4AG255600 Rh4BG261000 Rh4CG272100 Rh4DG255600 Rh5AG007800 Rh5AG007900 Rh5BG010000 Rh5BG010100 Rh5CG008500 Rh5CG008600 Rh5DG008500 Rh5DG008600
rosa_wichuraiana	Rw1G032250 Rw5G000810 Rw5G000820 Rw7G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	119
AccB1I	GGYRCC	2 cut(s)	59, 392
AccBSI	CCGCTC	1 cut(s)	22
AciI	CCGC	1 cut(s)	20
AclWI	GGATC	2 cut(s)	767, 793
AcsI	RAATTY	1 cut(s)	282
AcuI	CTGAAG	1 cut(s)	382
AfaI	GTAC	4 cut(s)	73, 192, 485, 920
AfiI	CCNNNNNNNGG	2 cut(s)	782, 789
AflIII	ACRYGT	1 cut(s)	803
AgsI	TTSAA	3 cut(s)	338, 446, 811
AjiI	CACGTC	1 cut(s)	804
AjnI	CCWGG	3 cut(s)	63, 142, 687
AjuI	GAANNNNNNNTTGG	2 cut(s)	139, 171
AluBI	AGCT	4 cut(s)	38, 341, 359, 891
AluI	AGCT	4 cut(s)	38, 341, 359, 891
Alw21I	GWGCWC	1 cut(s)	893
Alw26I	GTCTC	1 cut(s)	228
AlwI	GGATC	2 cut(s)	767, 793
AlwNI	CAGNNNCTG	1 cut(s)	362
Ama87I	CYCGRG	1 cut(s)	853
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	3 cut(s)	356, 359, 692
ApoI	RAATTY	1 cut(s)	282
Asp700I	GAANNNNTTC	1 cut(s)	333
AspLEI	GCGC	1 cut(s)	860
AspS9I	GGNCC	1 cut(s)	267
AsuC2I	CCSGG	5 cut(s)	514, 676, 783, 854, 855
AsuHPI	GGTGA	2 cut(s)	9, 124
AsuNHI	GCTAGC	1 cut(s)	376
AvaI	CYCGRG	1 cut(s)	853
BaeGI	GKGCMC	1 cut(s)	64
BanI	GGYRCC	2 cut(s)	59, 392
BanII	GRGCYC	1 cut(s)	893
Bbv12I	GWGCWC	1 cut(s)	893
BbvI	GCAGC	3 cut(s)	346, 368, 704
BccI	CCATC	2 cut(s)	225, 278
BceAI	ACGGC	1 cut(s)	549
BciT130I	CCWGG	3 cut(s)	65, 144, 689
BcnI	CCSGG	5 cut(s)	514, 676, 783, 854, 855
BcoDI	GTCTC	1 cut(s)	228
BfaI	CTAG	3 cut(s)	48, 264, 377
BfmI	CTRYAG	2 cut(s)	238, 487
BfoI	RGCGCY	1 cut(s)	861
BisI	GCNGC	3 cut(s)	357, 360, 693
BlsI	GCNGC	3 cut(s)	358, 361, 694
Bme1390I	CCNGG	8 cut(s)	65, 144, 514, 676, 689, 783, 854, 855
BmeT110I	CYCGRG	1 cut(s)	853
BmgBI	CACGTC	1 cut(s)	804
BmgT120I	GGNCC	1 cut(s)	267
BmiI	GGNNCC	3 cut(s)	61, 141, 394
BmrFI	CCNGG	8 cut(s)	65, 144, 514, 676, 689, 783, 854, 855
BmsI	GCATC	5 cut(s)	150, 444, 530, 704, 720
BmtI	GCTAGC	1 cut(s)	380
BpmI	CTGGAG	2 cut(s)	114, 384
BpuMI	CCSGG	5 cut(s)	514, 676, 783, 854, 855
BsaBI	GATNNNNATC	3 cut(s)	632, 647, 777
BsaJI	CCNNGG	6 cut(s)	55, 63, 135, 675, 852, 853
BsaXI	ACNNNNNCTCC	4 cut(s)	357, 387, 880, 910
Bsc4I	CCNNNNNNNGG	2 cut(s)	782, 789
Bse1I	ACTGG	1 cut(s)	97
Bse8I	GATNNNNATC	3 cut(s)	632, 647, 777
BseBI	CCWGG	3 cut(s)	65, 144, 689
BseDI	CCNNGG	6 cut(s)	55, 63, 135, 675, 852, 853
BseGI	GGATG	2 cut(s)	165, 521
BseJI	GATNNNNATC	3 cut(s)	632, 647, 777
BseLI	CCNNNNNNNGG	2 cut(s)	782, 789
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	97
BseSI	GKGCMC	1 cut(s)	64
BseXI	GCAGC	3 cut(s)	346, 368, 704
BshFI	GGCC	1 cut(s)	269
BshNI	GGYRCC	2 cut(s)	59, 392
BsiHKAI	GWGCWC	1 cut(s)	893
BsiHKCI	CYCGRG	1 cut(s)	853
BsiSI	CCGG	5 cut(s)	182, 513, 675, 783, 854
BslI	CCNNNNNNNGG	2 cut(s)	782, 789
BsmAI	GTCTC	1 cut(s)	228
BsnI	GGCC	1 cut(s)	269
BsoBI	CYCGRG	1 cut(s)	853
Bsp1286I	GDGCHC	2 cut(s)	64, 893
Bsp143I	GATC	2 cut(s)	772, 785
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	1 cut(s)	44
BspLI	GGNNCC	3 cut(s)	61, 141, 394
BspOI	GCTAGC	1 cut(s)	380
BspPI	GGATC	2 cut(s)	767, 793
BspT107I	GGYRCC	2 cut(s)	59, 392
BsrBI	CCGCTC	1 cut(s)	22
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	6 cut(s)	55, 63, 135, 675, 852, 853
BssMI	GATC	2 cut(s)	772, 785
BssT1I	CCWWGG	1 cut(s)	135
Bst2UI	CCWGG	3 cut(s)	65, 144, 689
Bst4CI	ACNGT	4 cut(s)	102, 442, 478, 583
Bst6I	CTCTTC	1 cut(s)	412
BstAPI	GCANNNNNTGC	2 cut(s)	322, 701
BstC8I	GCNNGC	3 cut(s)	318, 378, 433
BstDEI	CTNAG	2 cut(s)	31, 274
BstF5I	GGATG	2 cut(s)	165, 521
BstH2I	RGCGCY	1 cut(s)	861
BstHHI	GCGC	1 cut(s)	860
BstKTI	GATC	2 cut(s)	775, 788
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	2 cut(s)	772, 785
BstMWI	GCNNNNNNNGC	9 cut(s)	44, 160, 260, 313, 322, 518, 701, 857, 866
BstNI	CCWGG	3 cut(s)	65, 144, 689
BstNSI	RCATGY	2 cut(s)	595, 756
BstSCI	CCNGG	8 cut(s)	63, 142, 512, 674, 687, 781, 852, 853
BstSFI	CTRYAG	2 cut(s)	238, 487
BstSLI	GKGCMC	1 cut(s)	64
BstV1I	GCAGC	3 cut(s)	346, 368, 704
BstXI	CCANNNNNNTGG	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	269
BtrI	CACGTC	1 cut(s)	804
BtsCI	GGATG	2 cut(s)	165, 521
BtsI	GCAGTG	1 cut(s)	963
BtsIMutI	CAGTG	5 cut(s)	90, 438, 474, 579, 963
Cac8I	GCNNGC	3 cut(s)	318, 378, 433
CaiI	CAGNNNCTG	1 cut(s)	362
CfoI	GCGC	1 cut(s)	860
Cfr13I	GGNCC	1 cut(s)	267
Cfr9I	CCCGGG	1 cut(s)	853
Csp6I	GTAC	4 cut(s)	72, 191, 484, 919
CviQI	GTAC	4 cut(s)	72, 191, 484, 919
DdeI	CTNAG	2 cut(s)	31, 274
DpnI	GATC	2 cut(s)	774, 787
DpnII	GATC	2 cut(s)	772, 785
Eam1104I	CTCTTC	1 cut(s)	412
EarI	CTCTTC	1 cut(s)	412
Ecl136II	GAGCTC	1 cut(s)	891
Eco130I	CCWWGG	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	893
Eco53kI	GAGCTC	1 cut(s)	891
Eco57I	CTGAAG	1 cut(s)	382
Eco88I	CYCGRG	1 cut(s)	853
EcoICRI	GAGCTC	1 cut(s)	891
EcoRII	CCWGG	3 cut(s)	63, 142, 687
EcoT14I	CCWWGG	1 cut(s)	135
EcoT38I	GRGCYC	1 cut(s)	893
ErhI	CCWWGG	1 cut(s)	135
FalI	AAGNNNNNCTT	2 cut(s)	380, 412
Fnu4HI	GCNGC	3 cut(s)	357, 360, 693
FokI	GGATG	2 cut(s)	172, 508
FriOI	GRGCYC	1 cut(s)	893
Fsp4HI	GCNGC	3 cut(s)	357, 360, 693
FspBI	CTAG	3 cut(s)	48, 264, 377
GlaI	GCGC	1 cut(s)	859
GluI	GCNGC	3 cut(s)	357, 360, 693
GsuI	CTGGAG	2 cut(s)	114, 384
HaeII	RGCGCY	1 cut(s)	861
HaeIII	GGCC	1 cut(s)	269
HapII	CCGG	5 cut(s)	182, 513, 675, 783, 854
HhaI	GCGC	1 cut(s)	860
Hin6I	GCGC	1 cut(s)	858
HinP1I	GCGC	1 cut(s)	858
HindIII	AAGCTT	1 cut(s)	36
HinfI	GANTC	9 cut(s)	51, 221, 329, 423, 564, 648, 725, 825, 948
HpaII	CCGG	5 cut(s)	182, 513, 675, 783, 854
HphI	GGTGA	2 cut(s)	9, 124
Hpy166II	GTNNAC	1 cut(s)	921
Hpy188I	TCNGA	5 cut(s)	34, 56, 416, 772, 947
Hpy188III	TCNNGA	2 cut(s)	561, 886
Hpy8I	GTNNAC	1 cut(s)	921
HpyAV	CCTTC	4 cut(s)	362, 406, 609, 615
HpyCH4III	ACNGT	4 cut(s)	102, 442, 478, 583
HpyCH4IV	ACGT	2 cut(s)	570, 803
HpyCH4V	TGCA	5 cut(s)	316, 325, 431, 521, 798
HpyF10VI	GCNNNNNNNGC	9 cut(s)	44, 160, 260, 313, 322, 518, 701, 857, 866
HpyF3I	CTNAG	2 cut(s)	31, 274
HpySE526I	ACGT	2 cut(s)	570, 803
HspAI	GCGC	1 cut(s)	858
Kzo9I	GATC	2 cut(s)	772, 785
LmnI	GCTCC	3 cut(s)	353, 709, 888
Lsp1109I	GCAGC	3 cut(s)	346, 368, 704
LweI	GCATC	5 cut(s)	150, 444, 530, 704, 720
MaeI	CTAG	3 cut(s)	48, 264, 377
MaeII	ACGT	2 cut(s)	570, 803
MaeIII	GTNAC	3 cut(s)	210, 553, 716
MalI	GATC	2 cut(s)	774, 787
MbiI	CCGCTC	1 cut(s)	22
MboI	GATC	2 cut(s)	772, 785
MboII	GAAGA	3 cut(s)	308, 429, 943
MhlI	GDGCHC	2 cut(s)	64, 893
MluCI	AATT	5 cut(s)	194, 282, 458, 745, 844
MlyI	GAGTC	3 cut(s)	230, 417, 558
MmeI	TCCRAC	3 cut(s)	137, 549, 925
MnlI	CCTC	5 cut(s)	50, 89, 253, 343, 413
MroXI	GAANNNNTTC	1 cut(s)	333
MseI	TTAA	1 cut(s)	386
MslI	CAYNNNNRTG	3 cut(s)	479, 590, 738
MspA1I	CMGCKG	1 cut(s)	359
MspI	CCGG	5 cut(s)	182, 513, 675, 783, 854
MspR9I	CCNGG	8 cut(s)	65, 144, 514, 676, 689, 783, 854, 855
MvaI	CCWGG	3 cut(s)	65, 144, 689
MwoI	GCNNNNNNNGC	9 cut(s)	44, 160, 260, 313, 322, 518, 701, 857, 866
NciI	CCSGG	5 cut(s)	514, 676, 783, 854, 855
NdeII	GATC	2 cut(s)	772, 785
NheI	GCTAGC	1 cut(s)	376
NlaIV	GGNNCC	3 cut(s)	61, 141, 394
NmeAIII	GCCGAG	1 cut(s)	144
NmuCI	GTSAC	2 cut(s)	210, 553
NspI	RCATGY	2 cut(s)	595, 756
PdmI	GAANNNNTTC	1 cut(s)	333
PfeI	GAWTC	6 cut(s)	51, 329, 648, 725, 825, 948
PfoI	TCCNGGA	2 cut(s)	142, 781
PkrI	GCNGC	3 cut(s)	358, 361, 694
PleI	GAGTC	3 cut(s)	229, 417, 558
PpsI	GAGTC	3 cut(s)	229, 417, 558
PsiI	TTATAA	1 cut(s)	119
Psp124BI	GAGCTC	1 cut(s)	893
Psp6I	CCWGG	3 cut(s)	63, 142, 687
PspGI	CCWGG	3 cut(s)	63, 142, 687
PspN4I	GGNNCC	3 cut(s)	61, 141, 394
PspPI	GGNCC	1 cut(s)	267
PsrI	GAACNNNNNNTAC	2 cut(s)	162, 194
PstNI	CAGNNNCTG	1 cut(s)	362
PvuII	CAGCTG	1 cut(s)	359
RsaI	GTAC	4 cut(s)	73, 192, 485, 920
RsaNI	GTAC	4 cut(s)	72, 191, 484, 919
RseI	CAYNNNNRTG	3 cut(s)	479, 590, 738
SacI	GAGCTC	1 cut(s)	893
SaqAI	TTAA	1 cut(s)	386
SatI	GCNGC	3 cut(s)	357, 360, 693
Sau3AI	GATC	2 cut(s)	772, 785
Sau96I	GGNCC	1 cut(s)	267
SchI	GAGTC	3 cut(s)	230, 417, 558
ScrFI	CCNGG	8 cut(s)	65, 144, 514, 676, 689, 783, 854, 855
SduI	GDGCHC	2 cut(s)	64, 893
SfaNI	GCATC	5 cut(s)	150, 444, 530, 704, 720
SfcI	CTRYAG	2 cut(s)	238, 487
SmaI	CCCGGG	1 cut(s)	855
SmiMI	CAYNNNNRTG	3 cut(s)	479, 590, 738
Sse9I	AATT	5 cut(s)	194, 282, 458, 745, 844
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	3 cut(s)	48, 264, 377
SstI	GAGCTC	1 cut(s)	893
StyD4I	CCNGG	8 cut(s)	63, 142, 512, 674, 687, 781, 852, 853
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	4 cut(s)	102, 442, 478, 583
TaiI	ACGT	2 cut(s)	573, 806
TasI	AATT	5 cut(s)	194, 282, 458, 745, 844
TatI	WGTACW	2 cut(s)	71, 483
TfiI	GAWTC	6 cut(s)	51, 329, 648, 725, 825, 948
Tru1I	TTAA	1 cut(s)	386
Tru9I	TTAA	1 cut(s)	386
TscAI	CASTG	5 cut(s)	97, 445, 481, 586, 963
TseFI	GTSAC	2 cut(s)	210, 553
TseI	GCWGC	3 cut(s)	356, 359, 692
Tsp45I	GTSAC	2 cut(s)	210, 553
TspDTI	ATGAA	2 cut(s)	342, 589
TspGWI	ACGGA	2 cut(s)	322, 627
TspMI	CCCGGG	1 cut(s)	853
TspRI	CASTG	5 cut(s)	97, 445, 481, 586, 963
XapI	RAATTY	1 cut(s)	282
XceI	RCATGY	2 cut(s)	595, 756
XmaI	CCCGGG	1 cut(s)	853
XmnI	GAANNNNTTC	1 cut(s)	333
XspI	CTAG	3 cut(s)	48, 264, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.