Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000711

Physical Location & Seq

Genomic Coordinates Forward (+)

52649641 .. 52650188

Gene Structure 548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG272100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGTGGAAGGGGGAGCACACCCATCTAATAAGACAGAATTCACAGAATGCTGGAAGACCACATGGCGAACGCCTTACATTATGCGTCTTGCGCTCTCTGCTGGCATTGGAGGCCTCTTTTTTGGATATGACACAGGTGTCATTTCTGGGGCGCTGCTATACATTCGTGAGGACTTTGACGAAGTTGACAAGAAAACTTGGTTGCAAGAAACCATTGTGAGTATGGCAGTTGCAGGCGCTATCATTGGCACTGCCATTGGAGGATGGATGAACGATTCCCTTGGCCGCAAAAAATCAACATTAATAGCAGATATATGTGGTGTTCTTCGTGGGAGCAGTAGTTATGGGAGTGGCTCCCGTTCCTTGGGTGATCATCATTGGAAGAATCATAGTTGGTTTGGGAGTTGGAATAGCTTCCATGACCGTGCCCCTCTACATTTCAGAGGCTTCTCCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

152

Amino Acids

16.74

Weight (kDa)

7.85

Isoelectric Point (pI)

31.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	31 - 109	4.3e-12	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35740 AT4G16480 AT4G16480 AT4G16480
fragaria_vesca	FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00760
malus_domestica	MD05G1108700.v1.1 MD05G1359700.v1.1 MD05G1359900.v1.1 MD10G1335300.v1.1 MD10G1335500.v1.1
prunus_persica	Prupe.4G008300_v2.0.a1 Prupe.4G008300_v2.0.a1 Prupe.4G008400_v2.0.a1
pyrus_communis	pycom05g32480 pycom05g32490 pycom10g28510
rosa_chinensis	RchiOBHm_Chr1g0370501 RchiOBHm_Chr4g0424641 RchiOBHm_Chr5g0000981 RchiOBHm_Chr5g0001001 RchiOBHm_Chr7g0190531
rosa_laevigata	RLG00000004519 RLG00000030911 RLG00000030912
rosa_multiflora	Rmu_co8357507.1_g000001 Rmu_co8503263.1_g000001 Rmu_sc0000255.1_g000023 Rmu_sc0000255.1_g000024 Rmu_sc0002558.1_g000005 Rmu_sc0007329.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075280 Rroxscaffold_1G00075290 Rroxscaffold_3G00264530
rosa_rugosa	Rorug04G0198700 Rorug04G0388100 Rorug04G0388200 Rorug04G0388300 Rorug04G0388400 Rorug04G0388500 Rorug04G0388600 Rorug04G0388700 Rorug04G0388800
rosa_samantha	Rh1AG366200 Rh1BG329000 Rh1CG342600 Rh1DG359300 Rh1DG360000 Rh4AG255600 Rh4BG261000 Rh4CG272100 Rh4DG255600 Rh5AG007800 Rh5AG007900 Rh5BG010000 Rh5BG010100 Rh5CG008500 Rh5CG008600 Rh5DG008500 Rh5DG008600
rosa_wichuraiana	Rw1G032250 Rw5G000810 Rw5G000820 Rw7G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	137
AciI	CCGC	1 cut(s)	286
AcoI	YGGCCR	1 cut(s)	283
AcsI	RAATTY	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	364
AluBI	AGCT	1 cut(s)	414
AluI	AGCT	1 cut(s)	414
Alw21I	GWGCWC	1 cut(s)	19
AoxI	GGCC	2 cut(s)	112, 283
ApeKI	GCWGC	1 cut(s)	154
ApoI	RAATTY	1 cut(s)	38
AseI	ATTAAT	1 cut(s)	302
Asp700I	GAANNNNTTC	1 cut(s)	413
AspLEI	GCGC	3 cut(s)	94, 154, 239
AsuHPI	GGTGA	1 cut(s)	380
BaeGI	GKGCMC	1 cut(s)	430
BbsI	GAAGAC	1 cut(s)	62
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	141
BccI	CCATC	2 cut(s)	31, 258
BclI	TGATCA	1 cut(s)	370
BfoI	RGCGCY	2 cut(s)	155, 240
BisI	GCNGC	2 cut(s)	155, 286
BlsI	GCNGC	2 cut(s)	156, 287
BmiI	GGNNCC	1 cut(s)	355
BpiI	GAAGAC	1 cut(s)	62
BsaJI	CCNNGG	2 cut(s)	280, 363
BsaXI	ACNNNNNCTCC	2 cut(s)	325, 355
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
BseDI	CCNNGG	2 cut(s)	280, 363
BseGI	GGATG	2 cut(s)	269, 273
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseRI	GAGGAG	1 cut(s)	442
BseSI	GKGCMC	1 cut(s)	430
BseXI	GCAGC	1 cut(s)	141
BshFI	GGCC	2 cut(s)	114, 285
BsiHKAI	GWGCWC	1 cut(s)	19
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmI	GAATGC	1 cut(s)	53
BsnI	GGCC	2 cut(s)	114, 285
Bsp1286I	GDGCHC	2 cut(s)	19, 430
Bsp143I	GATC	1 cut(s)	370
BspACI	CCGC	1 cut(s)	286
BspANI	GGCC	2 cut(s)	114, 285
BspLI	GGNNCC	1 cut(s)	355
BssECI	CCNNGG	2 cut(s)	280, 363
BssMI	GATC	1 cut(s)	370
BssT1I	CCWWGG	2 cut(s)	280, 363
Bst4CI	ACNGT	1 cut(s)	425
BstC8I	GCNNGC	2 cut(s)	103, 235
BstF5I	GGATG	2 cut(s)	269, 273
BstH2I	RGCGCY	2 cut(s)	155, 240
BstHHI	GCGC	3 cut(s)	94, 154, 239
BstKTI	GATC	1 cut(s)	373
BstMBI	GATC	1 cut(s)	370
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 98, 111
BstSLI	GKGCMC	1 cut(s)	430
BstV1I	GCAGC	1 cut(s)	141
BstV2I	GAAGAC	1 cut(s)	62
BsuRI	GGCC	2 cut(s)	114, 285
BtsCI	GGATG	2 cut(s)	269, 273
BtsI	GCAGTG	1 cut(s)	249
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	2 cut(s)	103, 235
CfoI	GCGC	3 cut(s)	94, 154, 239
CseI	GACGC	1 cut(s)	74
CviAII	CATG	2 cut(s)	63, 419
CviJI	RGCY	5 cut(s)	114, 285, 354, 414, 447
CviKI_1	RGCY	5 cut(s)	114, 285, 354, 414, 447
DpnI	GATC	1 cut(s)	372
DpnII	GATC	1 cut(s)	370
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
EaeI	YGGCCR	1 cut(s)	283
Eco130I	CCWWGG	2 cut(s)	280, 363
Eco147I	AGGCCT	1 cut(s)	114
EcoRI	GAATTC	1 cut(s)	38
EcoT14I	CCWWGG	2 cut(s)	280, 363
ErhI	CCWWGG	2 cut(s)	280, 363
FaeI	CATG	2 cut(s)	66, 422
FatI	CATG	2 cut(s)	62, 418
FbaI	TGATCA	1 cut(s)	370
Fnu4HI	GCNGC	2 cut(s)	155, 286
FokI	GGATG	2 cut(s)	276, 280
Fsp4HI	GCNGC	2 cut(s)	155, 286
GlaI	GCGC	3 cut(s)	93, 153, 238
GluI	GCNGC	2 cut(s)	155, 286
HaeII	RGCGCY	2 cut(s)	155, 240
HaeIII	GGCC	2 cut(s)	114, 285
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	3 cut(s)	94, 154, 239
Hin1II	CATG	2 cut(s)	66, 422
Hin6I	GCGC	3 cut(s)	92, 152, 237
HinP1I	GCGC	3 cut(s)	92, 152, 237
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	2 cut(s)	275, 385
HphI	GGTGA	1 cut(s)	380
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	1 cut(s)	443
Hpy188III	TCNNGA	1 cut(s)	167
Hpy8I	GTNNAC	1 cut(s)	187
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4V	TGCA	2 cut(s)	205, 233
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 98, 111
Hsp92II	CATG	2 cut(s)	66, 422
HspAI	GCGC	3 cut(s)	92, 152, 237
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	1 cut(s)	370
LmnI	GCTCC	3 cut(s)	14, 333, 359
LpnPI	CCDG	5 cut(s)	37, 87, 120, 132, 219
Lsp1109I	GCAGC	1 cut(s)	141
MalI	GATC	1 cut(s)	372
MboI	GATC	1 cut(s)	370
MboII	GAAGA	3 cut(s)	67, 317, 394
MhlI	GDGCHC	2 cut(s)	19, 430
MluCI	AATT	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	386
MnlI	CCTC	6 cut(s)	104, 125, 163, 254, 437, 441
MroXI	GAANNNNTTC	1 cut(s)	413
MseI	TTAA	1 cut(s)	302
MslI	CAYNNNNRTG	1 cut(s)	423
Mva1269I	GAATGC	1 cut(s)	53
MwoI	GCNNNNNNNGC	3 cut(s)	91, 98, 111
NdeII	GATC	1 cut(s)	370
NlaIII	CATG	2 cut(s)	66, 422
NlaIV	GGNNCC	1 cut(s)	355
PceI	AGGCCT	1 cut(s)	114
PctI	GAATGC	1 cut(s)	53
PdmI	GAANNNNTTC	1 cut(s)	413
PfeI	GAWTC	2 cut(s)	275, 385
PkrI	GCNGC	2 cut(s)	156, 287
PshBI	ATTAAT	1 cut(s)	302
PspN4I	GGNNCC	1 cut(s)	355
RseI	CAYNNNNRTG	1 cut(s)	423
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	2 cut(s)	155, 286
Sau3AI	GATC	1 cut(s)	370
SduI	GDGCHC	2 cut(s)	19, 430
SetI	ASST	2 cut(s)	139, 416
SmiMI	CAYNNNNRTG	1 cut(s)	423
Sse9I	AATT	1 cut(s)	38
SseBI	AGGCCT	1 cut(s)	114
SsiI	CCGC	1 cut(s)	286
StuI	AGGCCT	1 cut(s)	114
StyI	CCWWGG	2 cut(s)	280, 363
TaaI	ACNGT	1 cut(s)	425
TasI	AATT	1 cut(s)	38
TauI	GCSGC	1 cut(s)	288
TfiI	GAWTC	2 cut(s)	275, 385
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TscAI	CASTG	1 cut(s)	256
TseI	GCWGC	1 cut(s)	154
TspDTI	ATGAA	1 cut(s)	284
TspRI	CASTG	1 cut(s)	256
VspI	ATTAAT	1 cut(s)	302
XapI	RAATTY	1 cut(s)	38
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220
XmnI	GAANNNNTTC	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.