Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000711

Physical Location & Seq

Genomic Coordinates Reverse (-)

55700614 .. 55704566

Gene Structure 3953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0388800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGAGGACGAAGAAGAAGCACCTCTCGCCGTTGAAATCGACCAACCCTTTTCAAGTGGACCCGATGACGTCGACGCTCCCGTCGGCGTCACCGTCATCACTGGTTATCTTGGTTCAGGCAAATCCACTCTGGTTAATCATATATTAAACACCCAACATGGGAAGAAAATTGCTGTGATATTAAACGAGTTTGGTGAGGAAATTGGGGTTGAGAGGGCAATGATAAACGAAGGAGATGGTGGTGCTCTTGTGGAAGAGTGGGTTGAGTTGGCAAATGGGTGTATATGTTGCACTGTGAAGCACAGCTTGGTGCAAGCACTAGAGCAACTTGTGCAGAGAAAAGAAAGACTTGATCATATATTGTTGGAGACTACTGGGTTGGCTAACCCTGCTCCACTTGCTTCGGTTCTGTGGTTGGATGATCAGTTGGAATCGACTGTCAAGCTCGATTCGATTATCACTGTTGTGGATGCCAAGAACCTCCGTTTTCAGCTGAGCGAGAATAAAAGTTCATCCTCATTTCCTGAAGCATATCTGCAGATTGCATTTGCGGATGTTGTAATACTTAACAAGGTTGATTTGGTTTCTCCAGAGGGTTCTAAAGATTATCTGGAGGAACTCGAGAAGGAGATACATAGTATTAATTCGCTTGCTTGTATCATCCATTCTGTTCGTTGTCAAGTCGACTTGTCTAAGATATTGGACTGTCGGGCCTATGATGCTATGCATGCTGTTCATTTAGAATCATTATTGGAAGAAAGTCGTACTTTATCTACACGGGATCTCCATGATAGTGGTGTGCGAACCTTATGCATTAGTGAGCAACAGAAGATTGATCTTGAAAAGGTCCGCTTATGGCTCGAGGAGATTCTTTGGGAAAAGAAATATGGCATGGATGTGTATCGCTGCAAAGGGGTTTTGAGTGTTCATAGTTCAAACCAATTACATACTTTGCAGGCAGTGAGGGAAATATATGAGATTGTGCCAACTCGTGATTGGCGAAAGGAAGAAAATCAGATGAACAAGATAGTGTTTATAGGGCATGATCTAAATGAGAATATTCTTACTGAGTCGTTTAGAGCATGCATAGTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

365

Amino Acids

40.95

Weight (kDa)

4.78

Isoelectric Point (pI)

47.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
cobW	PF02492	30 - 218	5.4e-57	CobW/HypB/UreG, nucleotide-binding domain
CobW_C	PF07683	268 - 362	1.4e-18	Cobalamin synthesis protein cobW C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35740 AT4G16480 AT4G16480 AT4G16480
fragaria_vesca	FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00760
malus_domestica	MD05G1108700.v1.1 MD05G1359700.v1.1 MD05G1359900.v1.1 MD10G1335300.v1.1 MD10G1335500.v1.1
prunus_persica	Prupe.4G008300_v2.0.a1 Prupe.4G008300_v2.0.a1 Prupe.4G008400_v2.0.a1
pyrus_communis	pycom05g32480 pycom05g32490 pycom10g28510
rosa_chinensis	RchiOBHm_Chr1g0370501 RchiOBHm_Chr4g0424641 RchiOBHm_Chr5g0000981 RchiOBHm_Chr5g0001001 RchiOBHm_Chr7g0190531
rosa_laevigata	RLG00000004519 RLG00000030911 RLG00000030912
rosa_multiflora	Rmu_co8357507.1_g000001 Rmu_co8503263.1_g000001 Rmu_sc0000255.1_g000023 Rmu_sc0000255.1_g000024 Rmu_sc0002558.1_g000005 Rmu_sc0007329.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075280 Rroxscaffold_1G00075290 Rroxscaffold_3G00264530
rosa_rugosa	Rorug04G0198700 Rorug04G0388100 Rorug04G0388200 Rorug04G0388300 Rorug04G0388400 Rorug04G0388500 Rorug04G0388600 Rorug04G0388700 Rorug04G0388800
rosa_samantha	Rh1AG366200 Rh1BG329000 Rh1CG342600 Rh1DG359300 Rh1DG360000 Rh4AG255600 Rh4BG261000 Rh4CG272100 Rh4DG255600 Rh5AG007800 Rh5AG007900 Rh5BG010000 Rh5BG010100 Rh5CG008500 Rh5CG008600 Rh5DG008500 Rh5DG008600
rosa_wichuraiana	Rw1G032250 Rw5G000810 Rw5G000820 Rw7G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	80
AatII	GACGTC	1 cut(s)	72
AccI	GTMKAC	2 cut(s)	72, 684
AciI	CCGC	2 cut(s)	551, 850
AclWI	GGATC	1 cut(s)	789
AcuI	CTGAAG	1 cut(s)	546
AcyI	GRCGYC	2 cut(s)	69, 87
AfaI	GTAC	1 cut(s)	766
AfiI	CCNNNNNNNGG	1 cut(s)	159
AgsI	TTSAA	4 cut(s)	35, 54, 842, 936
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AleI	CACNNNNGTG	1 cut(s)	464
AluBI	AGCT	3 cut(s)	306, 445, 493
AluI	AGCT	3 cut(s)	306, 445, 493
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	1 cut(s)	362
AlwI	GGATC	1 cut(s)	789
Ama87I	CYCGRG	2 cut(s)	620, 860
AoxI	GGCC	1 cut(s)	711
ApeKI	GCWGC	1 cut(s)	906
AseI	ATTAAT	1 cut(s)	642
AspS9I	GGNCC	3 cut(s)	59, 711, 847
AsuHPI	GGTGA	2 cut(s)	82, 206
AvaI	CYCGRG	2 cut(s)	620, 860
AvaII	GGWCC	2 cut(s)	59, 847
BauI	CACGAG	1 cut(s)	990
Bbv12I	GWGCWC	1 cut(s)	247
BbvI	GCAGC	1 cut(s)	893
BccI	CCATC	1 cut(s)	230
BceAI	ACGGC	1 cut(s)	14
BcgI	CGANNNNNNTGC	2 cut(s)	792, 826
BclI	TGATCA	2 cut(s)	352, 421
BcoDI	GTCTC	1 cut(s)	362
BfaI	CTAG	1 cut(s)	320
BfmI	CTRYAG	1 cut(s)	536
BisI	GCNGC	1 cut(s)	907
BlpI	GCTNAGC	1 cut(s)	494
BlsI	GCNGC	1 cut(s)	908
Bme18I	GGWCC	2 cut(s)	59, 847
BmeT110I	CYCGRG	2 cut(s)	620, 860
BmgT120I	GGNCC	3 cut(s)	59, 711, 847
BmiI	GGNNCC	1 cut(s)	61
BmrI	ACTGGG	1 cut(s)	384
BmsI	GCATC	2 cut(s)	460, 709
BmuI	ACTGGG	1 cut(s)	384
BpmI	CTGGAG	2 cut(s)	573, 632
Bpu1102I	GCTNAGC	1 cut(s)	494
BsaBI	GATNNNNATC	1 cut(s)	900
BsaHI	GRCGYC	2 cut(s)	69, 87
BsaXI	ACNNNNNCTCC	2 cut(s)	768, 798
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
Bse1I	ACTGG	2 cut(s)	106, 379
Bse3DI	GCAATG	1 cut(s)	225
Bse8I	GATNNNNATC	1 cut(s)	900
BseGI	GGATG	6 cut(s)	424, 475, 512, 559, 660, 901
BseJI	GATNNNNATC	1 cut(s)	900
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	2 cut(s)	485, 1059
BseNI	ACTGG	2 cut(s)	106, 379
BseRI	GAGGAG	1 cut(s)	878
BseXI	GCAGC	1 cut(s)	893
BsgI	GTGCAG	1 cut(s)	353
BshFI	GGCC	1 cut(s)	713
BsiHKAI	GWGCWC	1 cut(s)	247
BsiHKCI	CYCGRG	2 cut(s)	620, 860
BslI	CCNNNNNNNGG	1 cut(s)	159
BsmAI	GTCTC	1 cut(s)	362
BsnI	GGCC	1 cut(s)	713
BsoBI	CYCGRG	2 cut(s)	620, 860
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	5 cut(s)	352, 421, 781, 835, 1045
Bsp1720I	GCTNAGC	1 cut(s)	494
BspACI	CCGC	2 cut(s)	551, 850
BspANI	GGCC	1 cut(s)	713
BspCNI	CTCAG	2 cut(s)	486, 1060
BspLI	GGNNCC	1 cut(s)	61
BspMAI	CTGCAG	1 cut(s)	540
BspPI	GGATC	1 cut(s)	789
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	106, 379
BssMI	GATC	5 cut(s)	352, 421, 781, 835, 1045
BssNI	GRCGYC	2 cut(s)	69, 87
BssSI	CACGAG	1 cut(s)	990
Bst2BI	CACGAG	1 cut(s)	990
Bst4CI	ACNGT	5 cut(s)	94, 295, 439, 463, 707
Bst6I	CTCTTC	1 cut(s)	249
BstACI	GRCGYC	2 cut(s)	69, 87
BstAPI	GCANNNNNTGC	1 cut(s)	331
BstC8I	GCNNGC	5 cut(s)	315, 651, 729, 957, 1084
BstDEI	CTNAG	3 cut(s)	494, 693, 1068
BstF5I	GGATG	6 cut(s)	424, 475, 512, 559, 660, 901
BstKTI	GATC	5 cut(s)	355, 424, 784, 838, 1048
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	5 cut(s)	352, 421, 781, 835, 1045
BstMWI	GCNNNNNNNGC	6 cut(s)	26, 331, 389, 398, 719, 728
BstNSI	RCATGY	2 cut(s)	731, 1086
BstSFI	CTRYAG	1 cut(s)	536
BstV1I	GCAGC	1 cut(s)	893
BstX2I	RGATCY	1 cut(s)	781
BstXI	CCANNNNNNTGG	1 cut(s)	794
BstYI	RGATCY	1 cut(s)	781
BsuRI	GGCC	1 cut(s)	713
BtsCI	GGATG	6 cut(s)	424, 475, 512, 559, 660, 901
BtsI	GCAGTG	1 cut(s)	966
BtsIMutI	CAGTG	4 cut(s)	99, 291, 459, 966
Cac8I	GCNNGC	5 cut(s)	315, 651, 729, 957, 1084
Cfr13I	GGNCC	3 cut(s)	59, 711, 847
CseI	GACGC	2 cut(s)	76, 83
Csp6I	GTAC	1 cut(s)	765
CviAII	CATG	6 cut(s)	158, 728, 788, 892, 1043, 1083
CviJI	RGCY	6 cut(s)	306, 383, 445, 493, 713, 859
CviKI_1	RGCY	6 cut(s)	306, 383, 445, 493, 713, 859
CviQI	GTAC	1 cut(s)	765
DdeI	CTNAG	3 cut(s)	494, 693, 1068
DpnI	GATC	5 cut(s)	354, 423, 783, 837, 1047
DpnII	GATC	5 cut(s)	352, 421, 781, 835, 1045
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco47I	GGWCC	2 cut(s)	59, 847
Eco57I	CTGAAG	1 cut(s)	546
Eco88I	CYCGRG	2 cut(s)	620, 860
EcoT22I	ATGCAT	3 cut(s)	729, 815, 1088
FaeI	CATG	6 cut(s)	161, 731, 791, 895, 1046, 1086
FalI	AAGNNNNNCTT	8 cut(s)	290, 322, 333, 365, 751, 783, 836, 868
FatI	CATG	6 cut(s)	157, 727, 787, 891, 1042, 1082
FbaI	TGATCA	2 cut(s)	352, 421
FblI	GTMKAC	2 cut(s)	72, 684
Fnu4HI	GCNGC	1 cut(s)	907
FokI	GGATG	6 cut(s)	431, 482, 499, 566, 647, 908
Fsp4HI	GCNGC	1 cut(s)	907
FspBI	CTAG	1 cut(s)	320
GluI	GCNGC	1 cut(s)	907
GsuI	CTGGAG	2 cut(s)	573, 632
HaeIII	GGCC	1 cut(s)	713
HgaI	GACGC	2 cut(s)	76, 83
Hin1I	GRCGYC	2 cut(s)	69, 87
Hin1II	CATG	6 cut(s)	161, 731, 791, 895, 1046, 1086
HincII	GTYRAC	2 cut(s)	73, 685
HindII	GTYRAC	2 cut(s)	73, 685
HinfI	GANTC	5 cut(s)	431, 449, 743, 868, 1070
HphI	GGTGA	2 cut(s)	82, 206
Hpy166II	GTNNAC	3 cut(s)	59, 73, 685
Hpy188I	TCNGA	1 cut(s)	1017
Hpy188III	TCNNGA	6 cut(s)	524, 590, 611, 622, 839, 992
Hpy8I	GTNNAC	3 cut(s)	59, 73, 685
Hpy99I	CGWCG	3 cut(s)	74, 77, 86
HpyAV	CCTTC	2 cut(s)	224, 619
HpyCH4III	ACNGT	5 cut(s)	94, 295, 439, 463, 707
HpyCH4IV	ACGT	1 cut(s)	69
HpyF10VI	GCNNNNNNNGC	6 cut(s)	26, 331, 389, 398, 719, 728
HpyF3I	CTNAG	3 cut(s)	494, 693, 1068
HpySE526I	ACGT	1 cut(s)	69
Hsp92I	GRCGYC	2 cut(s)	69, 87
Hsp92II	CATG	6 cut(s)	161, 731, 791, 895, 1046, 1086
Ksp22I	TGATCA	2 cut(s)	352, 421
Kzo9I	GATC	5 cut(s)	352, 421, 781, 835, 1045
LmnI	GCTCC	2 cut(s)	82, 397
LpnPI	CCDG	9 cut(s)	87, 102, 116, 360, 402, 537, 596, 603, 941
Lsp1109I	GCAGC	1 cut(s)	893
LweI	GCATC	2 cut(s)	460, 709
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	5 cut(s)	354, 423, 783, 837, 1047
MboI	GATC	5 cut(s)	352, 421, 781, 835, 1045
MboII	GAAGA	7 cut(s)	23, 26, 175, 266, 767, 841, 1019
MflI	RGATCY	1 cut(s)	781
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	4 cut(s)	168, 201, 643, 941
MlyI	GAGTC	1 cut(s)	1079
MmeI	TCCRAC	3 cut(s)	345, 396, 408
MnlI	CCTC	9 cut(s)	33, 190, 207, 491, 526, 586, 607, 856, 957
Mph1103I	ATGCAT	3 cut(s)	729, 815, 1088
MseI	TTAA	5 cut(s)	135, 146, 182, 567, 642
MslI	CAYNNNNRTG	3 cut(s)	464, 792, 896
MspA1I	CMGCKG	1 cut(s)	493
MwoI	GCNNNNNNNGC	6 cut(s)	26, 331, 389, 398, 719, 728
NdeII	GATC	5 cut(s)	352, 421, 781, 835, 1045
NlaIII	CATG	6 cut(s)	161, 731, 791, 895, 1046, 1086
NlaIV	GGNNCC	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	88
NsiI	ATGCAT	3 cut(s)	729, 815, 1088
NspI	RCATGY	2 cut(s)	731, 1086
OliI	CACNNNNGTG	1 cut(s)	464
PaeI	GCATGC	2 cut(s)	731, 1086
PaeR7I	CTCGAG	2 cut(s)	620, 860
PcsI	WCGNNNNNNNCGW	3 cut(s)	78, 90, 997
PfeI	GAWTC	4 cut(s)	431, 449, 743, 868
PkrI	GCNGC	1 cut(s)	908
PleI	GAGTC	1 cut(s)	1078
PpsI	GAGTC	1 cut(s)	1078
PshBI	ATTAAT	1 cut(s)	642
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	3 cut(s)	59, 711, 847
PspXI	VCTCGAGB	1 cut(s)	860
PstI	CTGCAG	1 cut(s)	540
PsuI	RGATCY	1 cut(s)	781
PvuII	CAGCTG	1 cut(s)	493
RsaI	GTAC	1 cut(s)	766
RsaNI	GTAC	1 cut(s)	765
RseI	CAYNNNNRTG	3 cut(s)	464, 792, 896
SalI	GTCGAC	2 cut(s)	71, 683
SaqAI	TTAA	5 cut(s)	135, 146, 182, 567, 642
SatI	GCNGC	1 cut(s)	907
Sau3AI	GATC	5 cut(s)	352, 421, 781, 835, 1045
Sau96I	GGNCC	3 cut(s)	59, 711, 847
SchI	GAGTC	1 cut(s)	1079
SduI	GDGCHC	1 cut(s)	247
SetI	ASST	9 cut(s)	25, 72, 308, 447, 483, 495, 576, 809, 849
SfaNI	GCATC	2 cut(s)	460, 709
SfcI	CTRYAG	1 cut(s)	536
Sfr274I	CTCGAG	2 cut(s)	620, 860
SgrDI	CGTCGACG	1 cut(s)	71
SinI	GGWCC	2 cut(s)	59, 847
SlaI	CTCGAG	2 cut(s)	620, 860
SmiMI	CAYNNNNRTG	3 cut(s)	464, 792, 896
SmlI	CTYRAG	2 cut(s)	620, 860
SmoI	CTYRAG	2 cut(s)	620, 860
SphI	GCATGC	2 cut(s)	731, 1086
Sse9I	AATT	4 cut(s)	168, 201, 643, 941
SsiI	CCGC	2 cut(s)	551, 850
SspI	AATATT	1 cut(s)	1060
SspMI	CTAG	1 cut(s)	320
TaaI	ACNGT	5 cut(s)	94, 295, 439, 463, 707
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	8 cut(s)	39, 72, 434, 447, 452, 621, 684, 861
TasI	AATT	4 cut(s)	168, 201, 643, 941
TfiI	GAWTC	4 cut(s)	431, 449, 743, 868
Tru1I	TTAA	5 cut(s)	135, 146, 182, 567, 642
Tru9I	TTAA	5 cut(s)	135, 146, 182, 567, 642
TscAI	CASTG	4 cut(s)	106, 298, 466, 966
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	1 cut(s)	906
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	4 cut(s)	501, 725, 917, 1034
TspGWI	ACGGA	1 cut(s)	473
TspRI	CASTG	4 cut(s)	106, 298, 466, 966
VpaK11BI	GGWCC	2 cut(s)	59, 847
VspI	ATTAAT	1 cut(s)	642
XceI	RCATGY	2 cut(s)	731, 1086
XcmI	CCANNNNNNNNNTGG	1 cut(s)	993
XhoI	CTCGAG	2 cut(s)	620, 860
XmiI	GTMKAC	2 cut(s)	72, 684
XspI	CTAG	1 cut(s)	320
ZraI	GACGTC	1 cut(s)	70
Zsp2I	ATGCAT	3 cut(s)	729, 815, 1088

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.