Rh5BG010000
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
627458 .. 631422
3965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG010000.1

Sequence Viewer

Length: 1296 bp
ATGGAAGGAGGACACCCGGCTGCTAGTAAGACAGAGTTCACAGAGTGTTGGAGAACAACATGGAAGACCCCTTACATTTTGCGTCTCGCCCTCTCAGCTGGTATTGGAGGCCTCCTTTTCGGATACGATACAGGTGTGATTTCTGGGGCATTGCTGTACATTCGTGAGGACTTTCACCTCGACAAGAAAACATGGCTGCAGGAGACAATTGTGAGTATGGCAGTTGCCGGCGCCATAATTGGTGCTGCAATTGGAGGATGGATGAACGATGCTATTGGCCGGAGAAAGTCAATCTTGTGTGCAGATTTTGTGTTCTTCCTTGGTGCAATAGTCATGGCTGTTGCACCAGCTCCGTGGGTGATCATAATTGGAAGAATTCTGGTTGGTTTGGGAGTGGGTATGGCTTCTATGACCTCACCACTATACATCTCAGAATCTTCTCCTGCTAGAATCCGGGGTGCTCTTGTTAGTACAAACGGTTTTCTAATTACTGGAGGTCAATTTTTGTCATACCTCATCAATCTTGCCTTCACCAAGGCTCCTGGAACCTGGCGTTGGATGCTTGGAGTGGCCGGAGTTCCTGCTGTGGTTCAGTTTGGATTGATGTGGTCACTCCCAGAGTCTCCAAGGTGGCTCTACAGAAAGAATAAGGTAGATGAAGCCAGGGCTATCTTAGAGAAAATTTACCCTGCGGATGAGGTTGAGAATGAAATGAAAGCATTGCACGAATCTGTTGAAATGGAAAAGGCTGAGGAAGGAGATGTTGGTGATGGCATCATAGCAAAACTAAAGGGTGCATTCAGCAACCCTGTGGTCCGAAGAGGACTCTATGCAGGCATAACAGTCCAAGTAGCTCAGCAATTTGTGGGTATCAACACTGTCATGTATTACAGCCCAACCATTGTTCAGTTTGCTGGATTTGCTTCCAACCAAACAGCTATAGCACTTTCTCTCATCACTGCCGGTCTCAATGTTGTTGGCACTGTAATCAGTATGTGCTTTGTGGATAGATATGGAAGGAGAAGGCTTATGATCATTTCTATGGTTGGAATTATTATTTGTCTAGTGGTGTTATCTGTGGTGTTTTTCGAGGCAGCAGCTCAAGCTCCTCGTATTAGCAATTTGGAATCAACTCATTTTGGTAGTAACTCTACATGTCCGGCTTATGTGTCTGCCCCTAATCCAGCCTCATGGAACTGCATGACATGTTTGAAAGCTCAGTGCGGCTTCTGTGCTAATGGTGTCTCGGCTGTAAGTGCTACTTCACTTTTTTCTTTTGTGTATTTGCTTTCTTAA

Protein Analysis

431

Amino Acids

46.41

Weight (kDa)

8.51

Isoelectric Point (pI)

34.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 30 - 363 5.1e-93 Sugar (and other) transporter
MFS_1 PF07690 35 - 362 1.2e-32 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 230
AciI CCGC 2 cut(s) 692, 1224
AcoI YGGCCR 2 cut(s) 277, 570
AcsI RAATTY 2 cut(s) 375, 681
AcyI GRCGYC 1 cut(s) 231
AdeI CACNNNGTG 1 cut(s) 45
AfaI GTAC 2 cut(s) 158, 472
AfiI CCNNNNNNNGG 1 cut(s) 555
AflIII ACRYGT 2 cut(s) 1154, 1205
AgsI TTSAA 2 cut(s) 737, 1213
AjnI CCWGG 3 cut(s) 541, 548, 662
AjuI GAANNNNNNNTTGG 4 cut(s) 538, 570, 747, 779
AluBI AGCT 7 cut(s) 98, 350, 854, 938, 1100, 1106, 1217
AluI AGCT 7 cut(s) 98, 350, 854, 938, 1100, 1106, 1217
Alw21I GWGCWC 1 cut(s) 463
Alw26I GTCTC 5 cut(s) 89, 197, 627, 971, 1249
AoxI GGCC 3 cut(s) 109, 277, 570
ApeKI GCWGC 5 cut(s) 20, 196, 245, 1094, 1097
ApoI RAATTY 2 cut(s) 375, 681
AspLEI GCGC 1 cut(s) 233
AspS9I GGNCC 1 cut(s) 814
AsuC2I CCSGG 2 cut(s) 17, 455
AsuHPI GGTGA 5 cut(s) 167, 370, 408, 523, 779
AvaII GGWCC 1 cut(s) 814
BaeI ACNNNNGTAYC 2 cut(s) 120, 153
BanI GGYRCC 1 cut(s) 230
BarI GAAGNNNNNNTAC 2 cut(s) 56, 88
BbsI GAAGAC 1 cut(s) 71
Bbv12I GWGCWC 1 cut(s) 463
BbvCI CCTCAGC 1 cut(s) 750
BbvI GCAGC 5 cut(s) 7, 183, 232, 1106, 1109
BccI CCATC 2 cut(s) 252, 764
BciT130I CCWGG 3 cut(s) 543, 550, 664
BciVI GTATCC 1 cut(s) 116
BclI TGATCA 2 cut(s) 360, 1032
BcnI CCSGG 2 cut(s) 17, 455
BcoDI GTCTC 5 cut(s) 89, 197, 627, 971, 1249
BfaI CTAG 3 cut(s) 24, 447, 1064
BfmI CTRYAG 3 cut(s) 197, 637, 939
BfoI RGCGCY 1 cut(s) 234
BfuI GTATCC 1 cut(s) 116
BisI GCNGC 6 cut(s) 21, 197, 246, 1095, 1098, 1225
BlpI GCTNAGC 1 cut(s) 855
BlsI GCNGC 6 cut(s) 22, 198, 247, 1096, 1099, 1226
Bme1390I CCNGG 5 cut(s) 17, 455, 543, 550, 664
Bme18I GGWCC 1 cut(s) 814
BmgT120I GGNCC 1 cut(s) 814
BmiI GGNNCC 3 cut(s) 232, 540, 547
BmrFI CCNGG 5 cut(s) 17, 455, 543, 550, 664
BmsI GCATC 3 cut(s) 259, 549, 783
BpiI GAAGAC 1 cut(s) 71
BpmI CTGGAG 1 cut(s) 513
Bpu10I CCTNAGC 1 cut(s) 750
Bpu1102I GCTNAGC 1 cut(s) 855
BpuEI CTTGAG 1 cut(s) 1086
BpuMI CCSGG 2 cut(s) 17, 455
BsaHI GRCGYC 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 971
BsaJI CCNNGG 6 cut(s) 319, 353, 454, 534, 626, 663
BsaXI ACNNNNNCTCC 2 cut(s) 523, 553
Bsc4I CCNNNNNNNGG 1 cut(s) 555
Bse118I RCCGGY 2 cut(s) 227, 962
Bse1I ACTGG 1 cut(s) 496
Bse3DI GCAATG 2 cut(s) 149, 719
BseBI CCWGG 3 cut(s) 543, 550, 664
BseDI CCNNGG 6 cut(s) 319, 353, 454, 534, 626, 663
BseGI GGATG 4 cut(s) 263, 267, 564, 700
BseLI CCNNNNNNNGG 1 cut(s) 555
BseMI GCAATG 2 cut(s) 149, 719
BseMII CTCAG 5 cut(s) 108, 444, 741, 869, 1232
BseNI ACTGG 1 cut(s) 496
BseRI GAGGAG 1 cut(s) 1098
BseXI GCAGC 5 cut(s) 7, 183, 232, 1106, 1109
BsgI GTGCAG 1 cut(s) 321
BshFI GGCC 3 cut(s) 111, 279, 572
BshNI GGYRCC 1 cut(s) 230
BsiHKAI GWGCWC 1 cut(s) 463
BsiSI CCGG 7 cut(s) 17, 228, 280, 454, 573, 963, 1160
BslI CCNNNNNNNGG 1 cut(s) 555
BsmAI GTCTC 5 cut(s) 89, 197, 627, 971, 1249
BsmBI CGTCTC 1 cut(s) 89
BsmI GAATGC 1 cut(s) 797
BsnI GGCC 3 cut(s) 111, 279, 572
Bso31I GGTCTC 1 cut(s) 971
Bsp1286I GDGCHC 1 cut(s) 463
Bsp1407I TGTACA 1 cut(s) 156
Bsp143I GATC 2 cut(s) 360, 1032
Bsp1720I GCTNAGC 1 cut(s) 855
BspACI CCGC 2 cut(s) 692, 1224
BspANI GGCC 3 cut(s) 111, 279, 572
BspCNI CTCAG 5 cut(s) 107, 443, 742, 868, 1231
BspLI GGNNCC 3 cut(s) 232, 540, 547
BspMAI CTGCAG 1 cut(s) 201
BspT107I GGYRCC 1 cut(s) 230
BspTNI GGTCTC 1 cut(s) 971
BsrDI GCAATG 2 cut(s) 149, 719
BsrFI RCCGGY 2 cut(s) 227, 962
BsrGI TGTACA 1 cut(s) 156
BsrI ACTGG 1 cut(s) 496
BssAI RCCGGY 2 cut(s) 227, 962
BssECI CCNNGG 6 cut(s) 319, 353, 454, 534, 626, 663
BssMI GATC 2 cut(s) 360, 1032
BssNI GRCGYC 1 cut(s) 231
BssT1I CCWWGG 3 cut(s) 319, 534, 626
Bst2UI CCWGG 3 cut(s) 543, 550, 664
Bst4CI ACNGT 4 cut(s) 479, 844, 880, 985
Bst6I CTCTTC 1 cut(s) 814
BstACI GRCGYC 1 cut(s) 231
BstAUI TGTACA 1 cut(s) 156
BstC8I GCNNGC 2 cut(s) 229, 835
BstDEI CTNAG 6 cut(s) 94, 430, 673, 750, 855, 1218
BstDSI CCRYGG 1 cut(s) 353
BstF5I GGATG 4 cut(s) 263, 267, 564, 700
BstH2I RGCGCY 1 cut(s) 234
BstHHI GCGC 1 cut(s) 233
BstKTI GATC 2 cut(s) 363, 1035
BstMAI GTCTC 5 cut(s) 89, 197, 627, 971, 1249
BstMBI GATC 2 cut(s) 360, 1032
BstMWI GCNNNNNNNGC 5 cut(s) 95, 559, 920, 1103, 1256
BstNI CCWGG 3 cut(s) 543, 550, 664
BstNSI RCATGY 2 cut(s) 1158, 1209
BstSCI CCNGG 5 cut(s) 15, 453, 541, 548, 662
BstSFI CTRYAG 3 cut(s) 197, 637, 939
BstV1I GCAGC 5 cut(s) 7, 183, 232, 1106, 1109
BstV2I GAAGAC 1 cut(s) 71
BstXI CCANNNNNNTGG 2 cut(s) 354, 1191
BsuI GTATCC 1 cut(s) 116
BsuRI GGCC 3 cut(s) 111, 279, 572
BtgI CCRYGG 1 cut(s) 353
BtsCI GGATG 4 cut(s) 263, 267, 564, 700
BtsI GCAGTG 1 cut(s) 957
BtsIMutI CAGTG 4 cut(s) 876, 957, 981, 1226
Cac8I GCNNGC 2 cut(s) 229, 835
CfoI GCGC 1 cut(s) 233
Cfr10I RCCGGY 2 cut(s) 227, 962
Cfr13I GGNCC 1 cut(s) 814
CseI GACGC 1 cut(s) 71
Csp6I GTAC 2 cut(s) 157, 471
CviAII CATG 8 cut(s) 60, 192, 334, 883, 1155, 1191, 1201, 1206
CviQI GTAC 2 cut(s) 157, 471
DdeI CTNAG 6 cut(s) 94, 430, 673, 750, 855, 1218
DinI GGCGCC 1 cut(s) 232
DpnI GATC 2 cut(s) 362, 1034
DpnII GATC 2 cut(s) 360, 1032
DraIII CACNNNGTG 1 cut(s) 45
EaeI YGGCCR 2 cut(s) 277, 570
Eam1104I CTCTTC 1 cut(s) 814
EarI CTCTTC 1 cut(s) 814
Eco130I CCWWGG 3 cut(s) 319, 534, 626
Eco147I AGGCCT 1 cut(s) 111
Eco31I GGTCTC 1 cut(s) 971
Eco47I GGWCC 1 cut(s) 814
EcoRI GAATTC 1 cut(s) 375
EcoRII CCWGG 3 cut(s) 541, 548, 662
EcoT14I CCWWGG 3 cut(s) 319, 534, 626
EgeI GGCGCC 1 cut(s) 232
EheI GGCGCC 1 cut(s) 232
ErhI CCWWGG 3 cut(s) 319, 534, 626
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 8 cut(s) 63, 195, 337, 886, 1158, 1194, 1204, 1209
FalI AAGNNNNNCTT 4 cut(s) 278, 310, 1246, 1278
FatI CATG 8 cut(s) 59, 191, 333, 882, 1154, 1190, 1200, 1205
FbaI TGATCA 2 cut(s) 360, 1032
Fnu4HI GCNGC 6 cut(s) 21, 197, 246, 1095, 1098, 1225
FokI GGATG 4 cut(s) 270, 274, 571, 707
Fsp4HI GCNGC 6 cut(s) 21, 197, 246, 1095, 1098, 1225
FspBI CTAG 3 cut(s) 24, 447, 1064
GlaI GCGC 1 cut(s) 232
GluI GCNGC 6 cut(s) 21, 197, 246, 1095, 1098, 1225
GsuI CTGGAG 1 cut(s) 513
HaeII RGCGCY 1 cut(s) 234
HaeIII GGCC 3 cut(s) 111, 279, 572
HapII CCGG 7 cut(s) 17, 228, 280, 454, 573, 963, 1160
HgaI GACGC 1 cut(s) 71
HhaI GCGC 1 cut(s) 233
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 8 cut(s) 63, 195, 337, 886, 1158, 1194, 1204, 1209
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HinfI GANTC 6 cut(s) 434, 450, 620, 728, 825, 1127
HpaII CCGG 7 cut(s) 17, 228, 280, 454, 573, 963, 1160
HphI GGTGA 5 cut(s) 167, 370, 408, 523, 779
Hpy166II GTNNAC 1 cut(s) 39
Hpy188I TCNGA 3 cut(s) 122, 433, 818
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 1 cut(s) 39
HpyAV CCTTC 4 cut(s) 538, 749, 1011, 1017
HpyCH4III ACNGT 4 cut(s) 479, 844, 880, 985
HpyCH4V TGCA 9 cut(s) 199, 248, 302, 326, 344, 724, 797, 833, 1200
HpyF10VI GCNNNNNNNGC 5 cut(s) 95, 559, 920, 1103, 1256
HpyF3I CTNAG 6 cut(s) 94, 430, 673, 750, 855, 1218
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 8 cut(s) 63, 195, 337, 886, 1158, 1194, 1204, 1209
HspAI GCGC 1 cut(s) 231
KasI GGCGCC 1 cut(s) 230
KroI GCCGGC 1 cut(s) 227
KroNI GCCGGC 1 cut(s) 229
Ksp22I TGATCA 2 cut(s) 360, 1032
Kzo9I GATC 2 cut(s) 360, 1032
LmnI GCTCC 3 cut(s) 355, 544, 1111
Lsp1109I GCAGC 5 cut(s) 7, 183, 232, 1106, 1109
LweI GCATC 3 cut(s) 259, 549, 783
MaeI CTAG 3 cut(s) 24, 447, 1064
MaeIII GTNAC 2 cut(s) 609, 1145
MalI GATC 2 cut(s) 362, 1034
MboI GATC 2 cut(s) 360, 1032
MboII GAAGA 5 cut(s) 76, 307, 384, 429, 831
MfeI CAATTG 2 cut(s) 207, 249
MhlI GDGCHC 1 cut(s) 463
Mly113I GGCGCC 1 cut(s) 231
MlyI GAGTC 2 cut(s) 629, 819
MmeI TCCRAC 4 cut(s) 29, 536, 951, 1027
MroNI GCCGGC 1 cut(s) 227
MseI TTAA 1 cut(s) 1294
MslI CAYNNNNRTG 2 cut(s) 881, 1040
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 7 cut(s) 17, 228, 280, 454, 573, 963, 1160
MspR9I CCNGG 5 cut(s) 17, 455, 543, 550, 664
MunI CAATTG 2 cut(s) 207, 249
Mva1269I GAATGC 1 cut(s) 797
MvaI CCWGG 3 cut(s) 543, 550, 664
MwoI GCNNNNNNNGC 5 cut(s) 95, 559, 920, 1103, 1256
NaeI GCCGGC 1 cut(s) 229
NarI GGCGCC 1 cut(s) 231
NciI CCSGG 2 cut(s) 17, 455
NdeII GATC 2 cut(s) 360, 1032
NgoMIV GCCGGC 1 cut(s) 227
NlaIII CATG 8 cut(s) 63, 195, 337, 886, 1158, 1194, 1204, 1209
NlaIV GGNNCC 3 cut(s) 232, 540, 547
NmeAIII GCCGAG 1 cut(s) 1226
NmuCI GTSAC 1 cut(s) 609
NspI RCATGY 2 cut(s) 1158, 1209
PceI AGGCCT 1 cut(s) 111
PciI ACATGT 2 cut(s) 1154, 1205
PctI GAATGC 1 cut(s) 797
PdiI GCCGGC 1 cut(s) 229
PfeI GAWTC 4 cut(s) 434, 450, 728, 1127
PfoI TCCNGGA 1 cut(s) 541
PkrI GCNGC 6 cut(s) 22, 198, 247, 1096, 1099, 1226
PleI GAGTC 2 cut(s) 628, 819
PluTI GGCGCC 1 cut(s) 234
PpsI GAGTC 2 cut(s) 628, 819
PscI ACATGT 2 cut(s) 1154, 1205
Psp6I CCWGG 3 cut(s) 541, 548, 662
PspGI CCWGG 3 cut(s) 541, 548, 662
PspN4I GGNNCC 3 cut(s) 232, 540, 547
PspPI GGNCC 1 cut(s) 814
PstI CTGCAG 1 cut(s) 201
PvuII CAGCTG 1 cut(s) 98
RsaI GTAC 2 cut(s) 158, 472
RsaNI GTAC 2 cut(s) 157, 471
RseI CAYNNNNRTG 2 cut(s) 881, 1040
SaqAI TTAA 1 cut(s) 1294
SatI GCNGC 6 cut(s) 21, 197, 246, 1095, 1098, 1225
Sau3AI GATC 2 cut(s) 360, 1032
Sau96I GGNCC 1 cut(s) 814
SchI GAGTC 2 cut(s) 629, 819
ScrFI CCNGG 5 cut(s) 17, 455, 543, 550, 664
SduI GDGCHC 1 cut(s) 463
SfaNI GCATC 3 cut(s) 259, 549, 783
SfcI CTRYAG 3 cut(s) 197, 637, 939
SfoI GGCGCC 1 cut(s) 232
SinI GGWCC 1 cut(s) 814
SmiMI CAYNNNNRTG 2 cut(s) 881, 1040
SmlI CTYRAG 1 cut(s) 1101
SmoI CTYRAG 1 cut(s) 1101
SseBI AGGCCT 1 cut(s) 111
SsiI CCGC 2 cut(s) 692, 1224
SspDI GGCGCC 1 cut(s) 230
SspMI CTAG 3 cut(s) 24, 447, 1064
StuI AGGCCT 1 cut(s) 111
StyD4I CCNGG 5 cut(s) 15, 453, 541, 548, 662
StyI CCWWGG 3 cut(s) 319, 534, 626
TaaI ACNGT 4 cut(s) 479, 844, 880, 985
TaqI TCGA 2 cut(s) 180, 1089
TatI WGTACW 2 cut(s) 156, 470
TauI GCSGC 1 cut(s) 1227
TfiI GAWTC 4 cut(s) 434, 450, 728, 1127
Tru1I TTAA 1 cut(s) 1294
Tru9I TTAA 1 cut(s) 1294
TscAI CASTG 4 cut(s) 883, 964, 988, 1226
TseFI GTSAC 1 cut(s) 609
TseI GCWGC 5 cut(s) 20, 196, 245, 1094, 1097
Tsp45I GTSAC 1 cut(s) 609
TspDTI ATGAA 4 cut(s) 278, 672, 723, 728
TspGWI ACGGA 1 cut(s) 342
TspRI CASTG 4 cut(s) 883, 964, 988, 1226
VpaK11BI GGWCC 1 cut(s) 814
XapI RAATTY 2 cut(s) 375, 681
XceI RCATGY 2 cut(s) 1158, 1209
XspI CTAG 3 cut(s) 24, 447, 1064
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.