Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000711

Physical Location & Seq

Genomic Coordinates Reverse (-)

55676489 .. 55678987

Gene Structure 2499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0388200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTCGTCGCCCGAGAAGGAGAGAGAGACCCAGGTTTACATGGCCAAGCTCGCCGAGCAGGCCGAGCGTTACGAAGAAATGGTCGAGTGTATGAAGAAAGTTGCGAAGCTTGATCTTGAGCTGACTGTGGAAGAGAGGAATCTTTTGTCTGTGGGATACAAAAATGTGATAGGTGCTCGAAGGGCGTCTTGGCGCATCATGTCTTCCATTGAGCAAAAGGAAGAGTCTAAAGGGAATGAGCACAATGTCAAGCTGATCAAGAGTTACCGCCAGAAGGTGGAGGAGGAACTCTCCAAGATTTGCAGTGACATTCTCACTATCATTGACAAGCACCTGATTCCGTCTTCCAGCTCCGGGGAGGCCACTGTTTTCTACTACAAGATGAAAGGTGACTATTACCGGTACCTTGCTGAGTTCAAGACTGACCAGGACAGAAAAGAGGCAGCTGAACAGTCACTCAAGGGATATGAGGCTGCTTCAGCCACTGCAAACACAGATCTCCCATCGACCCACCCAATCCGTCTTGGTCTAGCTCTCAACTTCTCTGTCTTCTACTATGAGATTATGAATTCTCCCGAGAGGGCTTGTCATTTGGCTAAACAAGCTTTTGATGAGGCAATTGCAGAGTTGGACACCTTGAGTGAGGAGTCATACAAGGACAGCACCCTTATCATGCAACTGTTGAGAGACAACCTCACTCTCTGGACCTCTGATTTGCCTGAAGATGGAGGTGATGACAATTTTAAAGCCGACGAAACCAAATCTATCGAACCTAATGCTGCTGCCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

263

Amino Acids

29.94

Weight (kDa)

4.9

Isoelectric Point (pI)

52.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
14-3-3	PF00244	14 - 236	1e-108	14-3-3 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35740 AT4G16480 AT4G16480 AT4G16480
fragaria_vesca	FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00760
malus_domestica	MD05G1108700.v1.1 MD05G1359700.v1.1 MD05G1359900.v1.1 MD10G1335300.v1.1 MD10G1335500.v1.1
prunus_persica	Prupe.4G008300_v2.0.a1 Prupe.4G008300_v2.0.a1 Prupe.4G008400_v2.0.a1
pyrus_communis	pycom05g32480 pycom05g32490 pycom10g28510
rosa_chinensis	RchiOBHm_Chr1g0370501 RchiOBHm_Chr4g0424641 RchiOBHm_Chr5g0000981 RchiOBHm_Chr5g0001001 RchiOBHm_Chr7g0190531
rosa_laevigata	RLG00000004519 RLG00000030911 RLG00000030912
rosa_multiflora	Rmu_co8357507.1_g000001 Rmu_co8503263.1_g000001 Rmu_sc0000255.1_g000023 Rmu_sc0000255.1_g000024 Rmu_sc0002558.1_g000005 Rmu_sc0007329.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075280 Rroxscaffold_1G00075290 Rroxscaffold_3G00264530
rosa_rugosa	Rorug04G0198700 Rorug04G0388100 Rorug04G0388200 Rorug04G0388300 Rorug04G0388400 Rorug04G0388500 Rorug04G0388600 Rorug04G0388700 Rorug04G0388800
rosa_samantha	Rh1AG366200 Rh1BG329000 Rh1CG342600 Rh1DG359300 Rh1DG360000 Rh4AG255600 Rh4BG261000 Rh4CG272100 Rh4DG255600 Rh5AG007800 Rh5AG007900 Rh5BG010000 Rh5BG010100 Rh5CG008500 Rh5CG008600 Rh5DG008500 Rh5DG008600
rosa_wichuraiana	Rw1G032250 Rw5G000810 Rw5G000820 Rw7G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	402
AccB1I	GGYRCC	1 cut(s)	402
AccB7I	CCANNNNNTGG	1 cut(s)	277
AciI	CCGC	1 cut(s)	268
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	1 cut(s)	568
AcuI	CTGAAG	2 cut(s)	462, 741
AcyI	GRCGYC	1 cut(s)	185
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	4 cut(s)	274, 277, 354, 725
AgeI	ACCGGT	1 cut(s)	399
AgsI	TTSAA	1 cut(s)	418
AjnI	CCWGG	2 cut(s)	30, 426
AjuI	GAANNNNNNNTTGG	2 cut(s)	172, 204
AluBI	AGCT	8 cut(s)	49, 109, 121, 253, 351, 446, 533, 605
AluI	AGCT	8 cut(s)	49, 109, 121, 253, 351, 446, 533, 605
Alw21I	GWGCWC	2 cut(s)	178, 243
Alw26I	GTCTC	2 cut(s)	20, 681
AlwNI	CAGNNNCTG	1 cut(s)	485
Ama87I	CYCGRG	2 cut(s)	11, 575
AoxI	GGCC	3 cut(s)	42, 60, 360
ApeKI	GCWGC	4 cut(s)	443, 473, 779, 782
ApoI	RAATTY	1 cut(s)	568
ArsI	GACNNNNNNTTYG	4 cut(s)	66, 98, 697, 729
AsiGI	ACCGGT	1 cut(s)	399
Asp718I	GGTACC	1 cut(s)	402
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	1 cut(s)	705
AsuC2I	CCSGG	1 cut(s)	355
AsuHPI	GGTGA	2 cut(s)	401, 743
AvaI	CYCGRG	2 cut(s)	11, 575
AvaII	GGWCC	1 cut(s)	705
BalI	TGGCCA	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	402
BbsI	GAAGAC	3 cut(s)	195, 336, 541
Bbv12I	GWGCWC	2 cut(s)	178, 243
BbvI	GCAGC	4 cut(s)	455, 460, 766, 769
BccI	CCATC	2 cut(s)	511, 719
BcgI	CGANNNNNNTGC	2 cut(s)	758, 792
BciT130I	CCWGG	2 cut(s)	32, 428
BciVI	GTATCC	1 cut(s)	149
BclI	TGATCA	1 cut(s)	255
BcnI	CCSGG	1 cut(s)	355
BcoDI	GTCTC	2 cut(s)	20, 681
BfaI	CTAG	1 cut(s)	530
BfuI	GTATCC	1 cut(s)	149
BglI	GCCNNNNNGGC	1 cut(s)	59
BglII	AGATCT	1 cut(s)	496
BisI	GCNGC	4 cut(s)	444, 474, 780, 783
BlsI	GCNGC	4 cut(s)	445, 475, 781, 784
Bme1390I	CCNGG	3 cut(s)	32, 355, 428
Bme18I	GGWCC	1 cut(s)	705
BmeT110I	CYCGRG	2 cut(s)	11, 575
BmgT120I	GGNCC	1 cut(s)	705
BmiI	GGNNCC	1 cut(s)	404
BmrFI	CCNGG	3 cut(s)	32, 355, 428
BmsI	GCATC	1 cut(s)	204
BpiI	GAAGAC	3 cut(s)	195, 336, 541
BplI	GAGNNNNNCTC	4 cut(s)	275, 307, 678, 710
BpuEI	CTTGAG	3 cut(s)	137, 443, 658
BpuMI	CCSGG	1 cut(s)	355
BsaHI	GRCGYC	1 cut(s)	185
BsaI	GGTCTC	1 cut(s)	20
BsaJI	CCNNGG	2 cut(s)	30, 354
BsaWI	WCCGGW	1 cut(s)	399
Bsc4I	CCNNNNNNNGG	4 cut(s)	274, 277, 354, 725
Bse118I	RCCGGY	1 cut(s)	399
BseBI	CCWGG	2 cut(s)	32, 428
BseDI	CCNNGG	2 cut(s)	30, 354
BseLI	CCNNNNNNNGG	4 cut(s)	274, 277, 354, 725
BseMII	CTCAG	1 cut(s)	402
BseRI	GAGGAG	2 cut(s)	296, 659
BseXI	GCAGC	4 cut(s)	455, 460, 766, 769
BshFI	GGCC	3 cut(s)	44, 62, 362
BshNI	GGYRCC	1 cut(s)	402
BshTI	ACCGGT	1 cut(s)	399
BsiHKAI	GWGCWC	2 cut(s)	178, 243
BsiHKCI	CYCGRG	2 cut(s)	11, 575
BsiSI	CCGG	2 cut(s)	354, 400
BslI	CCNNNNNNNGG	4 cut(s)	274, 277, 354, 725
BsmAI	GTCTC	2 cut(s)	20, 681
BsnI	GGCC	3 cut(s)	44, 62, 362
Bso31I	GGTCTC	1 cut(s)	20
BsoBI	CYCGRG	2 cut(s)	11, 575
Bsp1286I	GDGCHC	2 cut(s)	178, 243
Bsp143I	GATC	3 cut(s)	112, 255, 496
BspACI	CCGC	1 cut(s)	268
BspANI	GGCC	3 cut(s)	44, 62, 362
BspCNI	CTCAG	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	404
BspT107I	GGYRCC	1 cut(s)	402
BspTNI	GGTCTC	1 cut(s)	20
BsrFI	RCCGGY	1 cut(s)	399
BssAI	RCCGGY	1 cut(s)	399
BssECI	CCNNGG	2 cut(s)	30, 354
BssMI	GATC	3 cut(s)	112, 255, 496
BssNI	GRCGYC	1 cut(s)	185
Bst2UI	CCWGG	2 cut(s)	32, 428
Bst4CI	ACNGT	4 cut(s)	127, 367, 453, 681
Bst6I	CTCTTC	2 cut(s)	126, 216
BstACI	GRCGYC	1 cut(s)	185
BstC8I	GCNNGC	2 cut(s)	51, 60
BstDEI	CTNAG	1 cut(s)	411
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	3 cut(s)	115, 258, 499
BstMAI	GTCTC	2 cut(s)	20, 681
BstMBI	GATC	3 cut(s)	112, 255, 496
BstMWI	GCNNNNNNNGC	7 cut(s)	50, 55, 59, 64, 182, 479, 602
BstNI	CCWGG	2 cut(s)	32, 428
BstSCI	CCNGG	3 cut(s)	30, 353, 426
BstV1I	GCAGC	4 cut(s)	455, 460, 766, 769
BstV2I	GAAGAC	3 cut(s)	195, 336, 541
BstX2I	RGATCY	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	496
BsuI	GTATCC	1 cut(s)	149
BsuRI	GGCC	3 cut(s)	44, 62, 362
BtsI	GCAGTG	2 cut(s)	310, 483
BtsIMutI	CAGTG	3 cut(s)	310, 363, 483
Cac8I	GCNNGC	2 cut(s)	51, 60
CaiI	CAGNNNCTG	1 cut(s)	485
CfoI	GCGC	1 cut(s)	195
Cfr10I	RCCGGY	1 cut(s)	399
Cfr13I	GGNCC	1 cut(s)	705
CseI	GACGC	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	403
CspAI	ACCGGT	1 cut(s)	399
CviAII	CATG	3 cut(s)	40, 199, 673
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	1 cut(s)	411
DpnI	GATC	3 cut(s)	114, 257, 498
DpnII	GATC	3 cut(s)	112, 255, 496
DraI	TTTAAA	1 cut(s)	745
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	2 cut(s)	126, 216
EarI	CTCTTC	2 cut(s)	126, 216
Eco31I	GGTCTC	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	705
Eco57I	CTGAAG	2 cut(s)	462, 741
Eco88I	CYCGRG	2 cut(s)	11, 575
EcoRI	GAATTC	1 cut(s)	568
EcoRII	CCWGG	2 cut(s)	30, 426
FaeI	CATG	3 cut(s)	43, 202, 676
FaiI	YATR	8 cut(s)	41, 92, 200, 468, 558, 566, 652, 674
FalI	AAGNNNNNCTT	2 cut(s)	172, 204
FatI	CATG	3 cut(s)	39, 198, 672
FbaI	TGATCA	1 cut(s)	255
Fnu4HI	GCNGC	4 cut(s)	444, 474, 780, 783
Fsp4HI	GCNGC	4 cut(s)	444, 474, 780, 783
FspBI	CTAG	1 cut(s)	530
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	4 cut(s)	444, 474, 780, 783
HaeIII	GGCC	3 cut(s)	44, 62, 362
HapII	CCGG	2 cut(s)	354, 400
HgaI	GACGC	1 cut(s)	174
HhaI	GCGC	1 cut(s)	195
Hin1I	GRCGYC	1 cut(s)	185
Hin1II	CATG	3 cut(s)	43, 202, 676
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HindIII	AAGCTT	2 cut(s)	107, 603
HinfI	GANTC	4 cut(s)	139, 224, 337, 647
HpaII	CCGG	2 cut(s)	354, 400
HphI	GGTGA	2 cut(s)	401, 743
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	1 cut(s)	712
Hpy188III	TCNNGA	5 cut(s)	116, 259, 418, 575, 703
Hpy8I	GTNNAC	1 cut(s)	37
Hpy99I	CGWCG	2 cut(s)	10, 755
HpyAV	CCTTC	3 cut(s)	10, 174, 268
HpyCH4III	ACNGT	4 cut(s)	127, 367, 453, 681
HpyCH4V	TGCA	4 cut(s)	303, 488, 623, 676
HpyF10VI	GCNNNNNNNGC	7 cut(s)	50, 55, 59, 64, 182, 479, 602
HpyF3I	CTNAG	1 cut(s)	411
Hsp92I	GRCGYC	1 cut(s)	185
Hsp92II	CATG	3 cut(s)	43, 202, 676
HspAI	GCGC	1 cut(s)	193
KpnI	GGTACC	1 cut(s)	406
Ksp22I	TGATCA	1 cut(s)	255
Kzo9I	GATC	3 cut(s)	112, 255, 496
LmnI	GCTCC	1 cut(s)	356
Lsp1109I	GCAGC	4 cut(s)	455, 460, 766, 769
LweI	GCATC	1 cut(s)	204
MaeI	CTAG	1 cut(s)	530
MaeIII	GTNAC	5 cut(s)	68, 263, 305, 389, 453
MalI	GATC	3 cut(s)	114, 257, 498
MboI	GATC	3 cut(s)	112, 255, 496
MboII	GAAGA	8 cut(s)	86, 106, 143, 195, 233, 336, 541, 734
MfeI	CAATTG	1 cut(s)	618
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	2 cut(s)	178, 243
MlsI	TGGCCA	1 cut(s)	44
MluCI	AATT	3 cut(s)	568, 618, 739
MluNI	TGGCCA	1 cut(s)	44
MlyI	GAGTC	2 cut(s)	233, 656
MmeI	TCCRAC	1 cut(s)	609
Mox20I	TGGCCA	1 cut(s)	44
MscI	TGGCCA	1 cut(s)	44
MseI	TTAA	1 cut(s)	744
Msp20I	TGGCCA	1 cut(s)	44
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	2 cut(s)	354, 400
MspR9I	CCNGG	3 cut(s)	32, 355, 428
MunI	CAATTG	1 cut(s)	618
MvaI	CCWGG	2 cut(s)	32, 428
MwoI	GCNNNNNNNGC	7 cut(s)	50, 55, 59, 64, 182, 479, 602
NciI	CCSGG	1 cut(s)	355
NdeII	GATC	3 cut(s)	112, 255, 496
NlaIII	CATG	3 cut(s)	43, 202, 676
NlaIV	GGNNCC	1 cut(s)	404
NmeAIII	GCCGAG	2 cut(s)	79, 88
NmuCI	GTSAC	3 cut(s)	305, 389, 453
PfeI	GAWTC	2 cut(s)	139, 337
PflMI	CCANNNNNTGG	1 cut(s)	277
PinAI	ACCGGT	1 cut(s)	399
PkrI	GCNGC	4 cut(s)	445, 475, 781, 784
PleI	GAGTC	2 cut(s)	232, 655
PpsI	GAGTC	2 cut(s)	232, 655
Psp6I	CCWGG	2 cut(s)	30, 426
PspGI	CCWGG	2 cut(s)	30, 426
PspN4I	GGNNCC	1 cut(s)	404
PspPI	GGNCC	1 cut(s)	705
PstNI	CAGNNNCTG	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	496
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SaqAI	TTAA	1 cut(s)	744
SatI	GCNGC	4 cut(s)	444, 474, 780, 783
Sau3AI	GATC	3 cut(s)	112, 255, 496
Sau96I	GGNCC	1 cut(s)	705
SchI	GAGTC	2 cut(s)	233, 656
ScrFI	CCNGG	3 cut(s)	32, 355, 428
SduI	GDGCHC	2 cut(s)	178, 243
SfaNI	GCATC	1 cut(s)	204
SinI	GGWCC	1 cut(s)	705
SmlI	CTYRAG	3 cut(s)	116, 458, 637
SmoI	CTYRAG	3 cut(s)	116, 458, 637
Sse9I	AATT	3 cut(s)	568, 618, 739
SsiI	CCGC	1 cut(s)	268
SspMI	CTAG	1 cut(s)	530
StyD4I	CCNGG	3 cut(s)	30, 353, 426
TaaI	ACNGT	4 cut(s)	127, 367, 453, 681
TaqI	TCGA	4 cut(s)	84, 178, 506, 768
TasI	AATT	3 cut(s)	568, 618, 739
TfiI	GAWTC	2 cut(s)	139, 337
Tru1I	TTAA	1 cut(s)	744
Tru9I	TTAA	1 cut(s)	744
TscAI	CASTG	3 cut(s)	310, 370, 490
TseFI	GTSAC	3 cut(s)	305, 389, 453
TseI	GCWGC	4 cut(s)	443, 473, 779, 782
Tsp45I	GTSAC	3 cut(s)	305, 389, 453
TspDTI	ATGAA	3 cut(s)	107, 398, 581
TspGWI	ACGGA	2 cut(s)	330, 509
TspRI	CASTG	3 cut(s)	310, 370, 490
Van91I	CCANNNNNTGG	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	705
XapI	RAATTY	1 cut(s)	568
XspI	CTAG	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.