RchiOBHm_Chr7g0190531
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
9595092 .. 9596812
1721 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17018

Sequence Viewer

Length: 1419 bp
ATGGAAGACCACTTGCATTATGTGTCTTGCCCTCTCGGCTGGTATTGGAGGGCCTCCTTTTCGATCGGATACGATACAGGTGTGATTTCTGGGGCATTGCTCTACATACGTGAGGACTTTAGTGACGTAGACAAGATGACTTGGCTGCAGGAGACCATTGTGAGTATGGCAGTTGCCGGAGCCATATTTGGTGCTGCAATTGGAGGGTGGATGAACGATGCTCTTGGCCGAAGAAAGTCAATCTTCTCCGTGGGTGATCATAATTGGAAGAATTCTGGTTGGTTTGGGAGTGGGTATGCTTCTATGACCTCACCACTATACATCTCAGAAGCTTCTCCTGCTAGTGTCCGAGGTGCTCTTGTTAGTACAAACGGTTTTCTAATTACTGGAGCTCAATTTTTGGCATACCTCATCAATCTTGCATTTACCAAGACTCCTGGAACCTGGCGTTGGCTGCTTGGAGTAGCCGGAGTCCCTGCTTTGGTTCAGTTAGGATTGATGTGGTCACTCCCAGAGTCTTCAAGGTGGCTATACAGAAAGAATAAGGTAGATGAAGCCAGGGCTACCTTAGAGAAAATTTATCCTACGAATGAGGTTGAGGTTGAGGATGAAATGAAAGCATTGCATGAATCTGTCGAAATGGAAAAGGCTGAGGAAGGAGATGTTAATGATGGCATCATAGCAAAACTAATGGGTGCATTCAGCAACCCTGTGGTTCGAAGAGGACTCTTTGCAGGCATAACAGTCCAGGTAGTTCAGCAATTTGTGGGTATCAACACTGTCATGTATTACATCCCAACCATTGTTCAGTTTGCTGGATTTGCTTCCAACCAAACGGCTTTAGCACTTTGTCTCAACACTTCTGGTCTCAATGTTAAGGCTTACGAAGTTATGATCATTTCTATGGTTGAAATTATCACTTGCCTGGGGGTGTTATCTGTGGTGTTTTTCCAGGCGCCAGCTCACGCTCCTCGTATTAGTAATTTGGAATCAACTCATTTTGGTAGTAACTATACATGTCCGGCTTATGTGTCTGTCGTCCCTAATCCAGCCTCATGGAACTGCATGACATGTTTGAAAGCTCAGAGCGACTTCTGTGCTAATAGTGTATATCCTTTCAGATACAGAGGCACATGTGGAGGGATTGCTGCAGTGGCTAATTGGAGTGCCAATCTGATGGTGAGTGAGACATTTTTAACCCTCACTCATGCTTTGGGTTCTGCTGGCACGTTCCTCCTTTTTGCTGGATTGTCTCTCATTGGACTCGTATTTATTTTCTTCTTGGTTCCTGAAACCAAACGGCTGCAATTTGAGGAGGTTGGCAATTTGCTTAAGAAAGGCTACATACCCAAGTTATTTGCTTCCAAGGATAAGGAAACCAAGGAAGTCAAGACTGTCGATCATCTTGAGTTGGTCTGA

Protein Analysis

472

Amino Acids

51.77

Weight (kDa)

5.95

Isoelectric Point (pI)

30.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 19 - 82 1.3e-07 Sugar (and other) transporter
Sugar_tr PF00083 95 - 442 1e-57 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 955
AccI GTMKAC 1 cut(s) 129
AcoI YGGCCR 1 cut(s) 226
AcsI RAATTY 2 cut(s) 271, 576
AcyI GRCGYC 1 cut(s) 956
AfaI GTAC 1 cut(s) 367
AfiI CCNNNNNNNGG 2 cut(s) 450, 481
AflII CTTAAG 1 cut(s) 1331
AflIII ACRYGT 3 cut(s) 1016, 1070, 1133
AgsI TTSAA 3 cut(s) 522, 911, 1078
AjnI CCWGG 6 cut(s) 436, 443, 557, 747, 924, 951
AjuI GAANNNNNNNTTGG 2 cut(s) 433, 465
AluBI AGCT 4 cut(s) 332, 392, 962, 1082
AluI AGCT 4 cut(s) 332, 392, 962, 1082
Alw21I GWGCWC 2 cut(s) 358, 394
Alw26I GTCTC 5 cut(s) 146, 857, 872, 1181, 1257
AoxI GGCC 2 cut(s) 51, 226
ApeKI GCWGC 5 cut(s) 145, 194, 454, 1148, 1303
ApoI RAATTY 2 cut(s) 271, 576
AspLEI GCGC 1 cut(s) 958
AspS9I GGNCC 1 cut(s) 51
AsuHPI GGTGA 3 cut(s) 266, 303, 1192
AsuII TTCGAA 1 cut(s) 718
BaeI ACNNNNGTAYC 2 cut(s) 66, 99
BanI GGYRCC 1 cut(s) 955
BanII GRGCYC 1 cut(s) 394
BbsI GAAGAC 2 cut(s) 12, 510
Bbv12I GWGCWC 2 cut(s) 358, 394
BbvCI CCTCAGC 1 cut(s) 651
BbvI GCAGC 5 cut(s) 132, 181, 441, 1135, 1290
BccI CCATC 2 cut(s) 665, 1171
BceAI ACGGC 2 cut(s) 852, 1316
BcgI CGANNNNNNTGC 2 cut(s) 1079, 1113
BciT130I CCWGG 6 cut(s) 438, 445, 559, 749, 926, 953
BciVI GTATCC 1 cut(s) 62
BclI TGATCA 2 cut(s) 256, 894
BcoDI GTCTC 5 cut(s) 146, 857, 872, 1181, 1257
BfaI CTAG 1 cut(s) 342
BfmI CTRYAG 2 cut(s) 146, 1149
BfoI RGCGCY 1 cut(s) 959
BfrI CTTAAG 1 cut(s) 1331
BfuI GTATCC 1 cut(s) 62
BglI GCCNNNNNGGC 1 cut(s) 36
BisI GCNGC 5 cut(s) 146, 195, 455, 1149, 1304
BlsI GCNGC 5 cut(s) 147, 196, 456, 1150, 1305
Bme1390I CCNGG 6 cut(s) 438, 445, 559, 749, 926, 953
BmgT120I GGNCC 1 cut(s) 51
BmiI GGNNCC 4 cut(s) 181, 442, 957, 1287
BmrFI CCNGG 6 cut(s) 438, 445, 559, 749, 926, 953
BmsI GCATC 2 cut(s) 208, 684
BpiI GAAGAC 2 cut(s) 12, 510
BpmI CTGGAG 1 cut(s) 408
Bpu10I CCTNAGC 1 cut(s) 651
Bpu14I TTCGAA 1 cut(s) 718
BsaAI YACGTR 1 cut(s) 110
BsaHI GRCGYC 1 cut(s) 956
BsaI GGTCTC 2 cut(s) 146, 872
BsaJI CCNNGG 6 cut(s) 249, 349, 558, 925, 1365, 1380
BsaXI ACNNNNNCTCC 2 cut(s) 418, 448
Bsc4I CCNNNNNNNGG 2 cut(s) 450, 481
Bse1I ACTGG 1 cut(s) 391
Bse3DI GCAATG 2 cut(s) 95, 620
BseBI CCWGG 6 cut(s) 438, 445, 559, 749, 926, 953
BseDI CCNNGG 6 cut(s) 249, 349, 558, 925, 1365, 1380
BseGI GGATG 3 cut(s) 216, 613, 792
BseLI CCNNNNNNNGG 2 cut(s) 450, 481
BseMI GCAATG 2 cut(s) 95, 620
BseMII CTCAG 3 cut(s) 339, 642, 1097
BseNI ACTGG 1 cut(s) 391
BseRI GAGGAG 2 cut(s) 960, 1328
BseXI GCAGC 5 cut(s) 132, 181, 441, 1135, 1290
Bsh1285I CGRYCG 1 cut(s) 66
BshFI GGCC 2 cut(s) 53, 228
BshNI GGYRCC 1 cut(s) 955
BsiEI CGRYCG 1 cut(s) 66
BsiHKAI GWGCWC 2 cut(s) 358, 394
BsiSI CCGG 3 cut(s) 177, 468, 1022
BslFI GGGAC 2 cut(s) 458, 1025
BslI CCNNNNNNNGG 2 cut(s) 450, 481
BsmAI GTCTC 5 cut(s) 146, 857, 872, 1181, 1257
BsmFI GGGAC 2 cut(s) 458, 1025
BsmI GAATGC 1 cut(s) 698
BsnI GGCC 2 cut(s) 53, 228
Bso31I GGTCTC 2 cut(s) 146, 872
Bsp119I TTCGAA 1 cut(s) 718
Bsp1286I GDGCHC 2 cut(s) 358, 394
Bsp143I GATC 4 cut(s) 63, 256, 894, 1399
BspANI GGCC 2 cut(s) 53, 228
BspCNI CTCAG 3 cut(s) 338, 643, 1096
BspLI GGNNCC 4 cut(s) 181, 442, 957, 1287
BspMAI CTGCAG 2 cut(s) 150, 1153
BspT104I TTCGAA 1 cut(s) 718
BspT107I GGYRCC 1 cut(s) 955
BspTI CTTAAG 1 cut(s) 1331
BspTNI GGTCTC 2 cut(s) 146, 872
BsrDI GCAATG 2 cut(s) 95, 620
BsrI ACTGG 1 cut(s) 391
BssECI CCNNGG 6 cut(s) 249, 349, 558, 925, 1365, 1380
BssMI GATC 4 cut(s) 63, 256, 894, 1399
BssNI GRCGYC 1 cut(s) 956
BssT1I CCWWGG 2 cut(s) 1365, 1380
Bst2UI CCWGG 6 cut(s) 438, 445, 559, 749, 926, 953
Bst4CI ACNGT 4 cut(s) 374, 745, 781, 1396
Bst6I CTCTTC 1 cut(s) 715
BstACI GRCGYC 1 cut(s) 956
BstAFI CTTAAG 1 cut(s) 1331
BstBAI YACGTR 1 cut(s) 110
BstBI TTCGAA 1 cut(s) 718
BstC8I GCNNGC 3 cut(s) 736, 960, 1225
BstDEI CTNAG 4 cut(s) 325, 568, 651, 1083
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 3 cut(s) 216, 613, 792
BstH2I RGCGCY 1 cut(s) 959
BstHHI GCGC 1 cut(s) 958
BstKTI GATC 4 cut(s) 66, 259, 897, 1402
BstMAI GTCTC 5 cut(s) 146, 857, 872, 1181, 1257
BstMBI GATC 4 cut(s) 63, 256, 894, 1399
BstMCI CGRYCG 1 cut(s) 66
BstMWI GCNNNNNNNGC 5 cut(s) 36, 338, 454, 821, 1154
BstNI CCWGG 6 cut(s) 438, 445, 559, 749, 926, 953
BstNSI RCATGY 3 cut(s) 1020, 1074, 1137
BstSCI CCNGG 6 cut(s) 436, 443, 557, 747, 924, 951
BstSFI CTRYAG 2 cut(s) 146, 1149
BstV1I GCAGC 5 cut(s) 132, 181, 441, 1135, 1290
BstV2I GAAGAC 2 cut(s) 12, 510
BstXI CCANNNNNNTGG 2 cut(s) 1056, 1177
BsuI GTATCC 1 cut(s) 62
BsuRI GGCC 2 cut(s) 53, 228
BtgI CCRYGG 1 cut(s) 249
BtsCI GGATG 3 cut(s) 216, 613, 792
BtsI GCAGTG 1 cut(s) 1158
BtsIMutI CAGTG 2 cut(s) 777, 1158
Cac8I GCNNGC 3 cut(s) 736, 960, 1225
CfoI GCGC 1 cut(s) 958
Cfr13I GGNCC 1 cut(s) 51
Csp6I GTAC 1 cut(s) 366
CviAII CATG 8 cut(s) 626, 784, 1017, 1056, 1066, 1071, 1134, 1208
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 4 cut(s) 325, 568, 651, 1083
DinI GGCGCC 1 cut(s) 957
DpnI GATC 4 cut(s) 65, 258, 896, 1401
DpnII GATC 4 cut(s) 63, 256, 894, 1399
EaeI YGGCCR 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 715
EarI CTCTTC 1 cut(s) 715
Ecl136II GAGCTC 1 cut(s) 392
Eco130I CCWWGG 2 cut(s) 1365, 1380
Eco24I GRGCYC 1 cut(s) 394
Eco31I GGTCTC 2 cut(s) 146, 872
Eco53kI GAGCTC 1 cut(s) 392
EcoICRI GAGCTC 1 cut(s) 392
EcoO109I RGGNCCY 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 271
EcoRII CCWGG 6 cut(s) 436, 443, 557, 747, 924, 951
EcoT14I CCWWGG 2 cut(s) 1365, 1380
EcoT38I GRGCYC 1 cut(s) 394
EgeI GGCGCC 1 cut(s) 957
EheI GGCGCC 1 cut(s) 957
ErhI CCWWGG 2 cut(s) 1365, 1380
FaeI CATG 8 cut(s) 629, 787, 1020, 1059, 1069, 1074, 1137, 1211
FalI AAGNNNNNCTT 2 cut(s) 227, 259
FaqI GGGAC 2 cut(s) 458, 1025
FatI CATG 8 cut(s) 625, 783, 1016, 1055, 1065, 1070, 1133, 1207
FbaI TGATCA 2 cut(s) 256, 894
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 5 cut(s) 146, 195, 455, 1149, 1304
FokI GGATG 3 cut(s) 223, 620, 779
FriOI GRGCYC 1 cut(s) 394
Fsp4HI GCNGC 5 cut(s) 146, 195, 455, 1149, 1304
FspBI CTAG 1 cut(s) 342
GlaI GCGC 1 cut(s) 957
GluI GCNGC 5 cut(s) 146, 195, 455, 1149, 1304
GsuI CTGGAG 1 cut(s) 408
HaeII RGCGCY 1 cut(s) 959
HaeIII GGCC 2 cut(s) 53, 228
HapII CCGG 3 cut(s) 177, 468, 1022
HhaI GCGC 1 cut(s) 958
Hin1I GRCGYC 1 cut(s) 956
Hin1II CATG 8 cut(s) 629, 787, 1020, 1059, 1069, 1074, 1137, 1211
Hin6I GCGC 1 cut(s) 956
HinP1I GCGC 1 cut(s) 956
HindIII AAGCTT 1 cut(s) 330
HinfI GANTC 7 cut(s) 433, 471, 515, 629, 726, 989, 1263
HpaII CCGG 3 cut(s) 177, 468, 1022
HphI GGTGA 3 cut(s) 266, 303, 1192
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 7 cut(s) 68, 328, 350, 1086, 1121, 1176, 1418
Hpy188III TCNNGA 3 cut(s) 1289, 1390, 1406
Hpy8I GTNNAC 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 650
HpyCH4III ACNGT 4 cut(s) 374, 745, 781, 1396
HpyCH4IV ACGT 3 cut(s) 109, 126, 1229
HpyF10VI GCNNNNNNNGC 5 cut(s) 36, 338, 454, 821, 1154
HpyF3I CTNAG 4 cut(s) 325, 568, 651, 1083
HpySE526I ACGT 3 cut(s) 109, 126, 1229
Hsp92I GRCGYC 1 cut(s) 956
Hsp92II CATG 8 cut(s) 629, 787, 1020, 1059, 1069, 1074, 1137, 1211
HspAI GCGC 1 cut(s) 956
KasI GGCGCC 1 cut(s) 955
Ksp22I TGATCA 2 cut(s) 256, 894
Kzo9I GATC 4 cut(s) 63, 256, 894, 1399
LmnI GCTCC 3 cut(s) 179, 389, 973
Lsp1109I GCAGC 5 cut(s) 132, 181, 441, 1135, 1290
LweI GCATC 2 cut(s) 208, 684
MaeI CTAG 1 cut(s) 342
MaeII ACGT 3 cut(s) 109, 126, 1229
MaeIII GTNAC 3 cut(s) 122, 504, 1007
MalI GATC 4 cut(s) 65, 258, 896, 1401
MboI GATC 4 cut(s) 63, 256, 894, 1399
MboII GAAGA 7 cut(s) 17, 235, 243, 280, 510, 732, 1270
MfeI CAATTG 1 cut(s) 198
MhlI GDGCHC 2 cut(s) 358, 394
Mly113I GGCGCC 1 cut(s) 956
MlyI GAGTC 5 cut(s) 427, 480, 524, 720, 1257
MmeI TCCRAC 1 cut(s) 852
MseI TTAA 4 cut(s) 666, 876, 1196, 1332
MslI CAYNNNNRTG 2 cut(s) 782, 902
MspCI CTTAAG 1 cut(s) 1331
MspI CCGG 3 cut(s) 177, 468, 1022
MspR9I CCNGG 6 cut(s) 438, 445, 559, 749, 926, 953
MunI CAATTG 1 cut(s) 198
Mva1269I GAATGC 1 cut(s) 698
MvaI CCWGG 6 cut(s) 438, 445, 559, 749, 926, 953
MwoI GCNNNNNNNGC 5 cut(s) 36, 338, 454, 821, 1154
NarI GGCGCC 1 cut(s) 956
NdeII GATC 4 cut(s) 63, 256, 894, 1399
NlaIII CATG 8 cut(s) 629, 787, 1020, 1059, 1069, 1074, 1137, 1211
NlaIV GGNNCC 4 cut(s) 181, 442, 957, 1287
NmeAIII GCCGAG 1 cut(s) 15
NmuCI GTSAC 2 cut(s) 122, 504
NspI RCATGY 3 cut(s) 1020, 1074, 1137
NspV TTCGAA 1 cut(s) 718
PciI ACATGT 3 cut(s) 1016, 1070, 1133
PctI GAATGC 1 cut(s) 698
PfeI GAWTC 2 cut(s) 629, 989
PfoI TCCNGGA 1 cut(s) 436
PkrI GCNGC 5 cut(s) 147, 196, 456, 1150, 1305
Ple19I CGATCG 1 cut(s) 66
PleI GAGTC 5 cut(s) 427, 479, 523, 720, 1257
PluTI GGCGCC 1 cut(s) 959
PpsI GAGTC 5 cut(s) 427, 479, 523, 720, 1257
Ppu21I YACGTR 1 cut(s) 110
PscI ACATGT 3 cut(s) 1016, 1070, 1133
Psp124BI GAGCTC 1 cut(s) 394
Psp6I CCWGG 6 cut(s) 436, 443, 557, 747, 924, 951
PspGI CCWGG 6 cut(s) 436, 443, 557, 747, 924, 951
PspN4I GGNNCC 4 cut(s) 181, 442, 957, 1287
PspPI GGNCC 1 cut(s) 51
PstI CTGCAG 2 cut(s) 150, 1153
PvuI CGATCG 1 cut(s) 66
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
RseI CAYNNNNRTG 2 cut(s) 782, 902
SacI GAGCTC 1 cut(s) 394
SaqAI TTAA 4 cut(s) 666, 876, 1196, 1332
SatI GCNGC 5 cut(s) 146, 195, 455, 1149, 1304
Sau3AI GATC 4 cut(s) 63, 256, 894, 1399
Sau96I GGNCC 1 cut(s) 51
SchI GAGTC 5 cut(s) 427, 480, 524, 720, 1257
ScrFI CCNGG 6 cut(s) 438, 445, 559, 749, 926, 953
SduI GDGCHC 2 cut(s) 358, 394
SfaNI GCATC 2 cut(s) 208, 684
SfcI CTRYAG 2 cut(s) 146, 1149
SfoI GGCGCC 1 cut(s) 957
SfuI TTCGAA 1 cut(s) 718
SmiMI CAYNNNNRTG 2 cut(s) 782, 902
SmlI CTYRAG 2 cut(s) 1331, 1406
SmoI CTYRAG 2 cut(s) 1331, 1406
SspDI GGCGCC 1 cut(s) 955
SspMI CTAG 1 cut(s) 342
SstI GAGCTC 1 cut(s) 394
StyD4I CCNGG 6 cut(s) 436, 443, 557, 747, 924, 951
StyI CCWWGG 2 cut(s) 1365, 1380
TaaI ACNGT 4 cut(s) 374, 745, 781, 1396
TaiI ACGT 3 cut(s) 112, 129, 1232
TaqI TCGA 4 cut(s) 62, 636, 718, 1398
TatI WGTACW 1 cut(s) 365
TfiI GAWTC 2 cut(s) 629, 989
Tru1I TTAA 4 cut(s) 666, 876, 1196, 1332
Tru9I TTAA 4 cut(s) 666, 876, 1196, 1332
TscAI CASTG 2 cut(s) 784, 1158
TseFI GTSAC 2 cut(s) 122, 504
TseI GCWGC 5 cut(s) 145, 194, 454, 1148, 1303
Tsp45I GTSAC 2 cut(s) 122, 504
TspDTI ATGAA 5 cut(s) 227, 567, 624, 629, 642
TspGWI ACGGA 1 cut(s) 238
TspRI CASTG 2 cut(s) 784, 1158
Vha464I CTTAAG 1 cut(s) 1331
XapI RAATTY 2 cut(s) 271, 576
XceI RCATGY 3 cut(s) 1020, 1074, 1137
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XmiI GTMKAC 1 cut(s) 129
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.