Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000711

Physical Location & Seq

Genomic Coordinates Forward (+)

57037015 .. 57037767

Gene Structure 753 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG255600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCAGTTGCAGGCGCTATCATTGGCGCTGCAATTGGAGGATGGATGAACGATGCCCTCGGCTGCAAAAAATCAATATTAATAGCAGATGTGATGTTCTTCGTGGGAGCAGTAGTTATGGGAGTGGCTCCTGTTCCTTGGGTGATCATCATTGGAAGAATCATAGTTGGTTTGGGAGTTGGAATGGCTTCCATGATCGTGCCCCTCTACATTTCAGAGACTTCTCCTCATAGAATTAGAGGAGCTCTTGTTAGTACAGACGGTCTTCTCATCACAGGAGGTCAGTTTTTGTCATACCTCATCAATCTGGTATTAGCCAACAAGGCTCCTGGAACATGGCATTGGATGCTTGAAGTCGCTGGTGTTCTAGCTCTCGTTCAGTTTATTTTGATGTTGTCACTCCCTGAGTCTCCTAAATTGCTCTATAGAGAGAACAAGGTAGATGAAGCTAGGGCCATCTTAGCGAAAATCTACCCTGTGGAAGAAGTTGATGATGAACTGAAGGCCTTGCATGAATATGTCGAATTTGAAAAGTTTGAGGAAGGAGCTATTGGGAAAAGTATGATGGAAAAACTAAAGGGTGCTTTCGGCAACACCGTGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

201

Amino Acids

21.64

Weight (kDa)

5.41

Isoelectric Point (pI)

24.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	2 - 186	1.1e-50	Sugar (and other) transporter
MFS_1	PF07690	3 - 155	1.4e-17	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35740 AT4G16480 AT4G16480 AT4G16480
fragaria_vesca	FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00760
malus_domestica	MD05G1108700.v1.1 MD05G1359700.v1.1 MD05G1359900.v1.1 MD10G1335300.v1.1 MD10G1335500.v1.1
prunus_persica	Prupe.4G008300_v2.0.a1 Prupe.4G008300_v2.0.a1 Prupe.4G008400_v2.0.a1
pyrus_communis	pycom05g32480 pycom05g32490 pycom10g28510
rosa_chinensis	RchiOBHm_Chr1g0370501 RchiOBHm_Chr4g0424641 RchiOBHm_Chr5g0000981 RchiOBHm_Chr5g0001001 RchiOBHm_Chr7g0190531
rosa_laevigata	RLG00000004519 RLG00000030911 RLG00000030912
rosa_multiflora	Rmu_co8357507.1_g000001 Rmu_co8503263.1_g000001 Rmu_sc0000255.1_g000023 Rmu_sc0000255.1_g000024 Rmu_sc0002558.1_g000005 Rmu_sc0007329.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075280 Rroxscaffold_1G00075290 Rroxscaffold_3G00264530
rosa_rugosa	Rorug04G0198700 Rorug04G0388100 Rorug04G0388200 Rorug04G0388300 Rorug04G0388400 Rorug04G0388500 Rorug04G0388600 Rorug04G0388700 Rorug04G0388800
rosa_samantha	Rh1AG366200 Rh1BG329000 Rh1CG342600 Rh1DG359300 Rh1DG360000 Rh4AG255600 Rh4BG261000 Rh4CG272100 Rh4DG255600 Rh5AG007800 Rh5AG007900 Rh5BG010000 Rh5BG010100 Rh5CG008500 Rh5CG008600 Rh5DG008500 Rh5DG008600
rosa_wichuraiana	Rw1G032250 Rw5G000810 Rw5G000820 Rw7G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	524
AcuI	CTGAAG	1 cut(s)	521
AfaI	GTAC	1 cut(s)	256
AgsI	TTSAA	2 cut(s)	353, 530
AjnI	CCWGG	1 cut(s)	328
AjuI	GAANNNNNNNTTGG	4 cut(s)	325, 357, 534, 566
AluBI	AGCT	4 cut(s)	245, 371, 449, 548
AluI	AGCT	4 cut(s)	245, 371, 449, 548
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	2 cut(s)	212, 414
AoxI	GGCC	2 cut(s)	453, 504
ApeKI	GCWGC	2 cut(s)	29, 63
ApoI	RAATTY	1 cut(s)	524
AseI	ATTAAT	1 cut(s)	80
Asp700I	GAANNNNTTC	1 cut(s)	187
AspLEI	GCGC	2 cut(s)	17, 29
AspS9I	GGNCC	1 cut(s)	453
AsuHPI	GGTGA	1 cut(s)	154
BaeGI	GKGCMC	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	247
BbsI	GAAGAC	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	247
BbvI	GCAGC	2 cut(s)	16, 50
BccI	CCATC	3 cut(s)	36, 464, 559
BciT130I	CCWGG	1 cut(s)	330
BclI	TGATCA	1 cut(s)	144
BcoDI	GTCTC	2 cut(s)	212, 414
BfaI	CTAG	2 cut(s)	368, 450
BfmI	CTRYAG	1 cut(s)	424
BfoI	RGCGCY	2 cut(s)	18, 30
BglI	GCCNNNNNGGC	1 cut(s)	323
BisI	GCNGC	2 cut(s)	30, 64
BlsI	GCNGC	2 cut(s)	31, 65
Bme1390I	CCNGG	1 cut(s)	330
BmgT120I	GGNCC	1 cut(s)	453
BmiI	GGNNCC	2 cut(s)	129, 327
BmrFI	CCNGG	1 cut(s)	330
BmsI	GCATC	2 cut(s)	43, 336
BpiI	GAAGAC	1 cut(s)	257
BsaJI	CCNNGG	3 cut(s)	58, 137, 597
BsaXI	ACNNNNNCTCC	4 cut(s)	99, 129, 234, 264
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	3 cut(s)	58, 137, 597
BseGI	GGATG	3 cut(s)	47, 51, 351
BseMII	CTCAG	1 cut(s)	396
BseRI	GAGGAG	2 cut(s)	216, 255
BseSI	GKGCMC	1 cut(s)	204
BseXI	GCAGC	2 cut(s)	16, 50
BshFI	GGCC	2 cut(s)	455, 506
BsiHKAI	GWGCWC	1 cut(s)	247
BsmAI	GTCTC	2 cut(s)	212, 414
BsnI	GGCC	2 cut(s)	455, 506
Bsp1286I	GDGCHC	2 cut(s)	204, 247
Bsp143I	GATC	2 cut(s)	144, 195
BspANI	GGCC	2 cut(s)	455, 506
BspCNI	CTCAG	1 cut(s)	397
BspLI	GGNNCC	2 cut(s)	129, 327
BssECI	CCNNGG	3 cut(s)	58, 137, 597
BssMI	GATC	2 cut(s)	144, 195
BssT1I	CCWWGG	1 cut(s)	137
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	2 cut(s)	263, 598
BstAPI	GCANNNNNTGC	1 cut(s)	346
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	2 cut(s)	405, 460
BstDSI	CCRYGG	1 cut(s)	597
BstF5I	GGATG	3 cut(s)	47, 51, 351
BstH2I	RGCGCY	2 cut(s)	18, 30
BstHHI	GCGC	2 cut(s)	17, 29
BstKTI	GATC	2 cut(s)	147, 198
BstMAI	GTCTC	2 cut(s)	212, 414
BstMBI	GATC	2 cut(s)	144, 195
BstMWI	GCNNNNNNNGC	3 cut(s)	323, 346, 461
BstNI	CCWGG	1 cut(s)	330
BstSCI	CCNGG	1 cut(s)	328
BstSFI	CTRYAG	1 cut(s)	424
BstSLI	GKGCMC	1 cut(s)	204
BstV1I	GCAGC	2 cut(s)	16, 50
BstV2I	GAAGAC	1 cut(s)	257
BsuRI	GGCC	2 cut(s)	455, 506
BtgI	CCRYGG	1 cut(s)	597
BtsCI	GGATG	3 cut(s)	47, 51, 351
Cac8I	GCNNGC	1 cut(s)	13
CfoI	GCGC	2 cut(s)	17, 29
Cfr13I	GGNCC	1 cut(s)	453
Csp6I	GTAC	1 cut(s)	255
CviAII	CATG	3 cut(s)	193, 336, 512
CviQI	GTAC	1 cut(s)	255
DdeI	CTNAG	2 cut(s)	405, 460
DpnI	GATC	2 cut(s)	146, 197
DpnII	GATC	2 cut(s)	144, 195
Ecl136II	GAGCTC	1 cut(s)	245
Eco130I	CCWWGG	1 cut(s)	137
Eco147I	AGGCCT	1 cut(s)	506
Eco24I	GRGCYC	1 cut(s)	247
Eco53kI	GAGCTC	1 cut(s)	245
Eco57I	CTGAAG	1 cut(s)	521
EcoICRI	GAGCTC	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	137
EcoT38I	GRGCYC	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	137
FaeI	CATG	3 cut(s)	196, 339, 515
FatI	CATG	3 cut(s)	192, 335, 511
FbaI	TGATCA	1 cut(s)	144
Fnu4HI	GCNGC	2 cut(s)	30, 64
FokI	GGATG	3 cut(s)	54, 58, 358
FriOI	GRGCYC	1 cut(s)	247
Fsp4HI	GCNGC	2 cut(s)	30, 64
FspBI	CTAG	2 cut(s)	368, 450
GlaI	GCGC	2 cut(s)	16, 28
GluI	GCNGC	2 cut(s)	30, 64
HaeII	RGCGCY	2 cut(s)	18, 30
HaeIII	GGCC	2 cut(s)	455, 506
HhaI	GCGC	2 cut(s)	17, 29
Hin1II	CATG	3 cut(s)	196, 339, 515
Hin6I	GCGC	2 cut(s)	15, 27
HinP1I	GCGC	2 cut(s)	15, 27
HinfI	GANTC	2 cut(s)	159, 407
HphI	GGTGA	1 cut(s)	154
Hpy188I	TCNGA	2 cut(s)	217, 605
HpyAV	CCTTC	2 cut(s)	496, 536
HpyCH4III	ACNGT	2 cut(s)	263, 598
HpyCH4V	TGCA	4 cut(s)	11, 32, 66, 511
HpyF10VI	GCNNNNNNNGC	3 cut(s)	323, 346, 461
HpyF3I	CTNAG	2 cut(s)	405, 460
Hsp92II	CATG	3 cut(s)	196, 339, 515
HspAI	GCGC	2 cut(s)	15, 27
Ksp22I	TGATCA	1 cut(s)	144
Kzo9I	GATC	2 cut(s)	144, 195
LmnI	GCTCC	5 cut(s)	107, 133, 242, 331, 545
LpnPI	CCDG	8 cut(s)	144, 261, 293, 315, 342, 345, 417, 489
Lsp1109I	GCAGC	2 cut(s)	16, 50
LweI	GCATC	2 cut(s)	43, 336
MaeI	CTAG	2 cut(s)	368, 450
MaeIII	GTNAC	1 cut(s)	396
MalI	GATC	2 cut(s)	146, 197
MboI	GATC	2 cut(s)	144, 195
MboII	GAAGA	4 cut(s)	91, 168, 257, 494
MfeI	CAATTG	1 cut(s)	33
MhlI	GDGCHC	2 cut(s)	204, 247
MluCI	AATT	4 cut(s)	33, 234, 416, 524
MlyI	GAGTC	1 cut(s)	416
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	8 cut(s)	32, 68, 215, 233, 237, 272, 308, 532
MroXI	GAANNNNTTC	1 cut(s)	187
MseI	TTAA	1 cut(s)	80
MslI	CAYNNNNRTG	2 cut(s)	197, 516
MspR9I	CCNGG	1 cut(s)	330
MunI	CAATTG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	330
MwoI	GCNNNNNNNGC	3 cut(s)	323, 346, 461
NdeII	GATC	2 cut(s)	144, 195
NlaIII	CATG	3 cut(s)	196, 339, 515
NlaIV	GGNNCC	2 cut(s)	129, 327
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	1 cut(s)	396
PceI	AGGCCT	1 cut(s)	506
PcsI	WCGNNNNNNNCGW	1 cut(s)	594
PdmI	GAANNNNTTC	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	159
PfoI	TCCNGGA	1 cut(s)	328
PkrI	GCNGC	2 cut(s)	31, 65
PleI	GAGTC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	415
PshBI	ATTAAT	1 cut(s)	80
Psp124BI	GAGCTC	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	328
PspGI	CCWGG	1 cut(s)	328
PspN4I	GGNNCC	2 cut(s)	129, 327
PspPI	GGNCC	1 cut(s)	453
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
RseI	CAYNNNNRTG	2 cut(s)	197, 516
SacI	GAGCTC	1 cut(s)	247
SaqAI	TTAA	1 cut(s)	80
SatI	GCNGC	2 cut(s)	30, 64
Sau3AI	GATC	2 cut(s)	144, 195
Sau96I	GGNCC	1 cut(s)	453
SchI	GAGTC	1 cut(s)	416
ScrFI	CCNGG	1 cut(s)	330
SduI	GDGCHC	2 cut(s)	204, 247
SetI	ASST	7 cut(s)	247, 283, 300, 373, 441, 451, 550
SfaNI	GCATC	2 cut(s)	43, 336
SfcI	CTRYAG	1 cut(s)	424
SmiMI	CAYNNNNRTG	2 cut(s)	197, 516
Sse9I	AATT	4 cut(s)	33, 234, 416, 524
SseBI	AGGCCT	1 cut(s)	506
SspI	AATATT	1 cut(s)	78
SspMI	CTAG	2 cut(s)	368, 450
SstI	GAGCTC	1 cut(s)	247
StuI	AGGCCT	1 cut(s)	506
StyD4I	CCNGG	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	2 cut(s)	263, 598
TaqI	TCGA	1 cut(s)	522
TasI	AATT	4 cut(s)	33, 234, 416, 524
TatI	WGTACW	1 cut(s)	254
TfiI	GAWTC	1 cut(s)	159
Tru1I	TTAA	1 cut(s)	80
Tru9I	TTAA	1 cut(s)	80
TseFI	GTSAC	1 cut(s)	396
TseI	GCWGC	2 cut(s)	29, 63
Tsp45I	GTSAC	1 cut(s)	396
TspDTI	ATGAA	4 cut(s)	62, 459, 510, 528
VspI	ATTAAT	1 cut(s)	80
XapI	RAATTY	1 cut(s)	524
XmnI	GAANNNNTTC	1 cut(s)	187
XspI	CTAG	2 cut(s)	368, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.