Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002558.1

Orthogroup ID

OG0000711

Physical Location & Seq

Genomic Coordinates Reverse (-)

12170 .. 13005

Gene Structure 836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002558.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atggcttctatgacctcaccactatacatctcaaaatcttctcctgctagaatccgaggtgctcttgctaggacaaatggttttctaattactggaggtcaatttttgtcatacctcatcaatcttgccttcaccaaggctcctggaacctggcgttggacgcttggagtagccggagttcctgctgtggttcagtttggattgatgtggtcactcccagagtctccaaggtggctctacagaaagaataaggccgaggaaggagatgttggtgatggcatcgtagcaaaactaaagggtgcattcaacaaccctgtggtccgaagaggactctgtgcaggcataacagtcccaagatttgcttccaaccaaacagctttagcactttctctcatcacttctggtctcaatgttgttggcactgtaatcagtatgtgctttgtggatagatatggaaggagaaggcttatgatcatttttatggttggaattatcacttgtctggtggtgttatctgtggtgtttttccaggcagcagctcacgttcctcgtattggcaatttggaatcaactcattttggtagtaactctacatgtccagcttatgtgtctgcccctaatccagcctcatggaactgcatgacatgtttgaaagctcagtgcttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

222

Amino Acids

23.94

Weight (kDa)

10.06

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35740 AT4G16480 AT4G16480 AT4G16480
fragaria_vesca	FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00760
malus_domestica	MD05G1108700.v1.1 MD05G1359700.v1.1 MD05G1359900.v1.1 MD10G1335300.v1.1 MD10G1335500.v1.1
prunus_persica	Prupe.4G008300_v2.0.a1 Prupe.4G008300_v2.0.a1 Prupe.4G008400_v2.0.a1
pyrus_communis	pycom05g32480 pycom05g32490 pycom10g28510
rosa_chinensis	RchiOBHm_Chr1g0370501 RchiOBHm_Chr4g0424641 RchiOBHm_Chr5g0000981 RchiOBHm_Chr5g0001001 RchiOBHm_Chr7g0190531
rosa_laevigata	RLG00000004519 RLG00000030911 RLG00000030912
rosa_multiflora	Rmu_co8357507.1_g000001 Rmu_co8503263.1_g000001 Rmu_sc0000255.1_g000023 Rmu_sc0000255.1_g000024 Rmu_sc0002558.1_g000005 Rmu_sc0007329.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075280 Rroxscaffold_1G00075290 Rroxscaffold_3G00264530
rosa_rugosa	Rorug04G0198700 Rorug04G0388100 Rorug04G0388200 Rorug04G0388300 Rorug04G0388400 Rorug04G0388500 Rorug04G0388600 Rorug04G0388700 Rorug04G0388800
rosa_samantha	Rh1AG366200 Rh1BG329000 Rh1CG342600 Rh1DG359300 Rh1DG360000 Rh4AG255600 Rh4BG261000 Rh4CG272100 Rh4DG255600 Rh5AG007800 Rh5AG007900 Rh5BG010000 Rh5BG010100 Rh5CG008500 Rh5CG008600 Rh5DG008500 Rh5DG008600
rosa_wichuraiana	Rw1G032250 Rw5G000810 Rw5G000820 Rw7G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	667
AfiI	CCNNNNNNNGG	2 cut(s)	156, 554
AflIII	ACRYGT	2 cut(s)	593, 644
AgsI	TTSAA	2 cut(s)	307, 652
AjnI	CCWGG	3 cut(s)	142, 149, 528
AjuI	GAANNNNNNNTTGG	6 cut(s)	139, 171, 252, 284, 346, 378
AluBI	AGCT	4 cut(s)	377, 539, 602, 656
AluI	AGCT	4 cut(s)	377, 539, 602, 656
Alw21I	GWGCWC	1 cut(s)	64
Alw26I	GTCTC	2 cut(s)	228, 410
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	2 cut(s)	533, 536
AspS9I	GGNCC	1 cut(s)	319
AsuHPI	GGTGA	3 cut(s)	9, 124, 284
AvaII	GGWCC	1 cut(s)	319
Bbv12I	GWGCWC	1 cut(s)	64
BbvI	GCAGC	2 cut(s)	545, 548
BccI	CCATC	1 cut(s)	269
BciT130I	CCWGG	3 cut(s)	144, 151, 530
BclI	TGATCA	1 cut(s)	471
BcoDI	GTCTC	2 cut(s)	228, 410
BfaI	CTAG	2 cut(s)	48, 69
BfmI	CTRYAG	1 cut(s)	238
BisI	GCNGC	2 cut(s)	534, 537
BlsI	GCNGC	2 cut(s)	535, 538
Bme1390I	CCNGG	3 cut(s)	144, 151, 530
Bme18I	GGWCC	1 cut(s)	319
BmgT120I	GGNCC	1 cut(s)	319
BmiI	GGNNCC	2 cut(s)	141, 148
BmrFI	CCNGG	3 cut(s)	144, 151, 530
BmsI	GCATC	1 cut(s)	288
BpmI	CTGGAG	1 cut(s)	114
BsaI	GGTCTC	1 cut(s)	410
BsaJI	CCNNGG	4 cut(s)	55, 135, 227, 255
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 554
Bse1I	ACTGG	1 cut(s)	97
BseBI	CCWGG	3 cut(s)	144, 151, 530
BseDI	CCNNGG	4 cut(s)	55, 135, 227, 255
BseLI	CCNNNNNNNGG	2 cut(s)	156, 554
BseNI	ACTGG	1 cut(s)	97
BseXI	GCAGC	2 cut(s)	545, 548
BsgI	GTGCAG	1 cut(s)	357
BshFI	GGCC	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	64
BsiSI	CCGG	1 cut(s)	174
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	2 cut(s)	156, 554
BsmAI	GTCTC	2 cut(s)	228, 410
BsmFI	GGGAC	1 cut(s)	335
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	254
Bso31I	GGTCTC	1 cut(s)	410
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	1 cut(s)	471
BspANI	GGCC	1 cut(s)	254
BspLI	GGNNCC	2 cut(s)	141, 148
BspTNI	GGTCTC	1 cut(s)	410
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	4 cut(s)	55, 135, 227, 255
BssMI	GATC	1 cut(s)	471
BssT1I	CCWWGG	2 cut(s)	135, 227
Bst2UI	CCWGG	3 cut(s)	144, 151, 530
Bst4CI	ACNGT	2 cut(s)	349, 424
Bst6I	CTCTTC	1 cut(s)	319
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	1 cut(s)	657
BstKTI	GATC	1 cut(s)	474
BstMAI	GTCTC	2 cut(s)	228, 410
BstMBI	GATC	1 cut(s)	471
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstNI	CCWGG	3 cut(s)	144, 151, 530
BstNSI	RCATGY	2 cut(s)	597, 648
BstSCI	CCNGG	3 cut(s)	142, 149, 528
BstSFI	CTRYAG	1 cut(s)	238
BstV1I	GCAGC	2 cut(s)	545, 548
BstXI	CCANNNNNNTGG	1 cut(s)	630
BsuRI	GGCC	1 cut(s)	254
BtsIMutI	CAGTG	2 cut(s)	420, 665
Cac8I	GCNNGC	1 cut(s)	340
Cfr13I	GGNCC	1 cut(s)	319
CseI	GACGC	1 cut(s)	169
CviAII	CATG	4 cut(s)	594, 630, 640, 645
DdeI	CTNAG	1 cut(s)	657
DpnI	GATC	1 cut(s)	473
DpnII	GATC	1 cut(s)	471
Eam1104I	CTCTTC	1 cut(s)	319
EarI	CTCTTC	1 cut(s)	319
Eco130I	CCWWGG	2 cut(s)	135, 227
Eco31I	GGTCTC	1 cut(s)	410
Eco47I	GGWCC	1 cut(s)	319
EcoRII	CCWGG	3 cut(s)	142, 149, 528
EcoT14I	CCWWGG	2 cut(s)	135, 227
ErhI	CCWWGG	2 cut(s)	135, 227
FaeI	CATG	4 cut(s)	597, 633, 643, 648
FalI	AAGNNNNNCTT	2 cut(s)	346, 378
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	4 cut(s)	593, 629, 639, 644
FbaI	TGATCA	1 cut(s)	471
Fnu4HI	GCNGC	2 cut(s)	534, 537
Fsp4HI	GCNGC	2 cut(s)	534, 537
FspBI	CTAG	2 cut(s)	48, 69
GluI	GCNGC	2 cut(s)	534, 537
GsuI	CTGGAG	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	1 cut(s)	174
HgaI	GACGC	1 cut(s)	169
Hin1II	CATG	4 cut(s)	597, 633, 643, 648
HinfI	GANTC	4 cut(s)	51, 221, 330, 566
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	3 cut(s)	9, 124, 284
Hpy188I	TCNGA	2 cut(s)	56, 323
HpyAV	CCTTC	4 cut(s)	139, 254, 450, 456
HpyCH4III	ACNGT	2 cut(s)	349, 424
HpyCH4IV	ACGT	1 cut(s)	543
HpyCH4V	TGCA	3 cut(s)	302, 338, 639
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpyF3I	CTNAG	1 cut(s)	657
HpySE526I	ACGT	1 cut(s)	543
Hsp92II	CATG	4 cut(s)	597, 633, 643, 648
Ksp22I	TGATCA	1 cut(s)	471
Kzo9I	GATC	1 cut(s)	471
LmnI	GCTCC	1 cut(s)	145
Lsp1109I	GCAGC	2 cut(s)	545, 548
LweI	GCATC	1 cut(s)	288
MaeI	CTAG	2 cut(s)	48, 69
MaeII	ACGT	1 cut(s)	543
MaeIII	GTNAC	2 cut(s)	210, 584
MalI	GATC	1 cut(s)	473
MboI	GATC	1 cut(s)	471
MboII	GAAGA	2 cut(s)	30, 336
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	4 cut(s)	87, 101, 489, 559
MlyI	GAGTC	2 cut(s)	230, 324
MmeI	TCCRAC	3 cut(s)	137, 390, 466
MnlI	CCTC	8 cut(s)	25, 50, 89, 125, 250, 320, 558, 637
MslI	CAYNNNNRTG	1 cut(s)	479
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	3 cut(s)	144, 151, 530
Mva1269I	GAATGC	1 cut(s)	302
MvaI	CCWGG	3 cut(s)	144, 151, 530
MwoI	GCNNNNNNNGC	1 cut(s)	160
NdeII	GATC	1 cut(s)	471
NlaIII	CATG	4 cut(s)	597, 633, 643, 648
NlaIV	GGNNCC	2 cut(s)	141, 148
NmeAIII	GCCGAG	1 cut(s)	280
NmuCI	GTSAC	1 cut(s)	210
NspI	RCATGY	2 cut(s)	597, 648
PciI	ACATGT	2 cut(s)	593, 644
PctI	GAATGC	1 cut(s)	302
PfeI	GAWTC	2 cut(s)	51, 566
PfoI	TCCNGGA	1 cut(s)	142
PkrI	GCNGC	2 cut(s)	535, 538
PleI	GAGTC	2 cut(s)	229, 324
PpsI	GAGTC	2 cut(s)	229, 324
PscI	ACATGT	2 cut(s)	593, 644
PsiI	TTATAA	1 cut(s)	667
Psp6I	CCWGG	3 cut(s)	142, 149, 528
PspGI	CCWGG	3 cut(s)	142, 149, 528
PspN4I	GGNNCC	2 cut(s)	141, 148
PspPI	GGNCC	1 cut(s)	319
PsrI	GAACNNNNNNTAC	2 cut(s)	162, 194
RseI	CAYNNNNRTG	1 cut(s)	479
SatI	GCNGC	2 cut(s)	534, 537
Sau3AI	GATC	1 cut(s)	471
Sau96I	GGNCC	1 cut(s)	319
SchI	GAGTC	2 cut(s)	230, 324
ScrFI	CCNGG	3 cut(s)	144, 151, 530
SduI	GDGCHC	1 cut(s)	64
SfaNI	GCATC	1 cut(s)	288
SfcI	CTRYAG	1 cut(s)	238
SinI	GGWCC	1 cut(s)	319
SmiMI	CAYNNNNRTG	1 cut(s)	479
Sse9I	AATT	4 cut(s)	87, 101, 489, 559
SspMI	CTAG	2 cut(s)	48, 69
StyD4I	CCNGG	3 cut(s)	142, 149, 528
StyI	CCWWGG	2 cut(s)	135, 227
TaaI	ACNGT	2 cut(s)	349, 424
TaiI	ACGT	1 cut(s)	546
TasI	AATT	4 cut(s)	87, 101, 489, 559
TfiI	GAWTC	2 cut(s)	51, 566
TscAI	CASTG	2 cut(s)	427, 665
TseFI	GTSAC	1 cut(s)	210
TseI	GCWGC	2 cut(s)	533, 536
Tsp45I	GTSAC	1 cut(s)	210
TspRI	CASTG	2 cut(s)	427, 665
VpaK11BI	GGWCC	1 cut(s)	319
XceI	RCATGY	2 cut(s)	597, 648
XspI	CTAG	2 cut(s)	48, 69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.