Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000711

Physical Location & Seq

Genomic Coordinates Forward (+)

50227258 .. 50228070

Gene Structure 813 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39390

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGGAGTGGTTCCCGTTCCTTGGGTGATCATCATTGGAAGAATCATAGTTGGTTTGGGAGTTGGAATAGCTTCCATGACCGTGCCCCTCTACATTTCAGAGGCTTCTCCTCATAGAATCAGAGGAGCTCTTGTTAGTACAGACGGTCTTCTCATCACAGGAGGTCAGTTTTTGTCATACCTCATCAATCTGGTATTAGCCAACAAGGCTCCTGGAACATGGCGTTGGATGCTTGGAGTCGCTGGTGTTCCAGCTCTCGTTCGGTTTATTTTGATGTTGTCACTCCCTGAGTCTCCTAGATTGCTCTACAGAGAGAACAAGGTAGATGAAGCTAGGGCTATCTTAGCGAAAATTTACCCTGTGGAAGAAGTCGATGATGAACTGAAGGCCTTGCATGAATCTGTCGAATTTGAAAAGTCTGAGGAAGGAGCTATTGGGAAAAGTATGATGGAAAAACTAAAGGGTGCTTTCGGCAACACCGTGGTCCGAAGAGGACTCTATGCAGGGATCACAATCCAAGTCGCGCAGCAATTTGTGGTTCATTACAGCCCAACCATTGTTCAATTTGCTGGATTCGCATCTAACCAAACCAATGTTTTCAAATGCGAAAGCGAAGGCGAAGGCGTCTTATTAGTGCCTCGCGAGGTGAGTGCCTCAAGGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

221

Amino Acids

24.09

Weight (kDa)

7.85

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	6 - 193	9.6e-12	Major Facilitator Superfamily
Sugar_tr	PF00083	7 - 195	1.7e-45	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35740 AT4G16480 AT4G16480 AT4G16480
fragaria_vesca	FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00760
malus_domestica	MD05G1108700.v1.1 MD05G1359700.v1.1 MD05G1359900.v1.1 MD10G1335300.v1.1 MD10G1335500.v1.1
prunus_persica	Prupe.4G008300_v2.0.a1 Prupe.4G008300_v2.0.a1 Prupe.4G008400_v2.0.a1
pyrus_communis	pycom05g32480 pycom05g32490 pycom10g28510
rosa_chinensis	RchiOBHm_Chr1g0370501 RchiOBHm_Chr4g0424641 RchiOBHm_Chr5g0000981 RchiOBHm_Chr5g0001001 RchiOBHm_Chr7g0190531
rosa_laevigata	RLG00000004519 RLG00000030911 RLG00000030912
rosa_multiflora	Rmu_co8357507.1_g000001 Rmu_co8503263.1_g000001 Rmu_sc0000255.1_g000023 Rmu_sc0000255.1_g000024 Rmu_sc0002558.1_g000005 Rmu_sc0007329.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075280 Rroxscaffold_1G00075290 Rroxscaffold_3G00264530
rosa_rugosa	Rorug04G0198700 Rorug04G0388100 Rorug04G0388200 Rorug04G0388300 Rorug04G0388400 Rorug04G0388500 Rorug04G0388600 Rorug04G0388700 Rorug04G0388800
rosa_samantha	Rh1AG366200 Rh1BG329000 Rh1CG342600 Rh1DG359300 Rh1DG360000 Rh4AG255600 Rh4BG261000 Rh4CG272100 Rh4DG255600 Rh5AG007800 Rh5AG007900 Rh5BG010000 Rh5BG010100 Rh5CG008500 Rh5CG008600 Rh5DG008500 Rh5DG008600
rosa_wichuraiana	Rw1G032250 Rw5G000810 Rw5G000820 Rw7G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	524, 642
AclWI	GGATC	1 cut(s)	515
AcsI	RAATTY	2 cut(s)	351, 407
AcuI	CTGAAG	1 cut(s)	404
AcyI	GRCGYC	1 cut(s)	624
AfaI	GTAC	1 cut(s)	139
AfiI	CCNNNNNNNGG	1 cut(s)	21
AgsI	TTSAA	3 cut(s)	413, 563, 601
AjnI	CCWGG	1 cut(s)	211
AjuI	GAANNNNNNNTTGG	4 cut(s)	208, 240, 417, 449
AluBI	AGCT	5 cut(s)	71, 128, 254, 332, 431
AluI	AGCT	5 cut(s)	71, 128, 254, 332, 431
Alw21I	GWGCWC	1 cut(s)	130
Alw26I	GTCTC	1 cut(s)	297
AlwI	GGATC	1 cut(s)	515
AoxI	GGCC	1 cut(s)	387
ApeKI	GCWGC	1 cut(s)	526
ApoI	RAATTY	2 cut(s)	351, 407
Asp700I	GAANNNNTTC	1 cut(s)	70
AspLEI	GCGC	1 cut(s)	526
AspS9I	GGNCC	1 cut(s)	484
AsuHPI	GGTGA	2 cut(s)	37, 658
AvaII	GGWCC	1 cut(s)	484
BaeGI	GKGCMC	1 cut(s)	87
BanII	GRGCYC	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	140
Bbv12I	GWGCWC	1 cut(s)	130
BbvI	GCAGC	1 cut(s)	538
BccI	CCATC	1 cut(s)	442
BcgI	CGANNNNNNTGC	2 cut(s)	632, 666
BciT130I	CCWGG	1 cut(s)	213
BclI	TGATCA	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	297
BfaI	CTAG	2 cut(s)	297, 333
BfmI	CTRYAG	1 cut(s)	307
BglI	GCCNNNNNGGC	1 cut(s)	206
BisI	GCNGC	1 cut(s)	527
BlsI	GCNGC	1 cut(s)	528
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	484
BmgT120I	GGNCC	1 cut(s)	484
BmiI	GGNNCC	2 cut(s)	12, 210
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	2 cut(s)	219, 587
BpiI	GAAGAC	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	640
BsaBI	GATNNNNATC	2 cut(s)	512, 577
BsaHI	GRCGYC	1 cut(s)	624
BsaJI	CCNNGG	2 cut(s)	20, 480
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bsc4I	CCNNNNNNNGG	1 cut(s)	21
Bse8I	GATNNNNATC	2 cut(s)	512, 577
BseBI	CCWGG	1 cut(s)	213
BseDI	CCNNGG	2 cut(s)	20, 480
BseGI	GGATG	1 cut(s)	234
BseJI	GATNNNNATC	2 cut(s)	512, 577
BseLI	CCNNNNNNNGG	1 cut(s)	21
BseMII	CTCAG	2 cut(s)	279, 411
BseRI	GAGGAG	2 cut(s)	99, 138
BseSI	GKGCMC	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	538
Bsh1236I	CGCG	2 cut(s)	524, 642
BshFI	GGCC	1 cut(s)	389
BsiHKAI	GWGCWC	1 cut(s)	130
BslI	CCNNNNNNNGG	1 cut(s)	21
BsmAI	GTCTC	1 cut(s)	297
BsnI	GGCC	1 cut(s)	389
Bsp1286I	GDGCHC	2 cut(s)	87, 130
Bsp143I	GATC	2 cut(s)	27, 507
Bsp68I	TCGCGA	1 cut(s)	642
BspANI	GGCC	1 cut(s)	389
BspCNI	CTCAG	2 cut(s)	280, 412
BspFNI	CGCG	2 cut(s)	524, 642
BspLI	GGNNCC	2 cut(s)	12, 210
BspPI	GGATC	1 cut(s)	515
BssECI	CCNNGG	2 cut(s)	20, 480
BssMI	GATC	2 cut(s)	27, 507
BssNI	GRCGYC	1 cut(s)	624
BssT1I	CCWWGG	1 cut(s)	20
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	3 cut(s)	82, 146, 481
Bst6I	CTCTTC	1 cut(s)	484
BstACI	GRCGYC	1 cut(s)	624
BstDEI	CTNAG	3 cut(s)	288, 343, 420
BstDSI	CCRYGG	1 cut(s)	480
BstF5I	GGATG	1 cut(s)	234
BstFNI	CGCG	2 cut(s)	524, 642
BstHHI	GCGC	1 cut(s)	526
BstKTI	GATC	2 cut(s)	30, 510
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	2 cut(s)	27, 507
BstMWI	GCNNNNNNNGC	4 cut(s)	206, 229, 344, 575
BstNI	CCWGG	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	211
BstSFI	CTRYAG	1 cut(s)	307
BstSLI	GKGCMC	1 cut(s)	87
BstUI	CGCG	2 cut(s)	524, 642
BstV1I	GCAGC	1 cut(s)	538
BstV2I	GAAGAC	1 cut(s)	140
BsuRI	GGCC	1 cut(s)	389
BtgI	CCRYGG	1 cut(s)	480
BtsCI	GGATG	1 cut(s)	234
BtuMI	TCGCGA	1 cut(s)	642
CfoI	GCGC	1 cut(s)	526
Cfr13I	GGNCC	1 cut(s)	484
CseI	GACGC	1 cut(s)	613
Csp6I	GTAC	1 cut(s)	138
CviAII	CATG	3 cut(s)	76, 219, 395
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	3 cut(s)	288, 343, 420
DpnI	GATC	2 cut(s)	29, 509
DpnII	GATC	2 cut(s)	27, 507
Eam1104I	CTCTTC	1 cut(s)	484
EarI	CTCTTC	1 cut(s)	484
Ecl136II	GAGCTC	1 cut(s)	128
Eco130I	CCWWGG	1 cut(s)	20
Eco147I	AGGCCT	1 cut(s)	389
Eco24I	GRGCYC	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	484
Eco53kI	GAGCTC	1 cut(s)	128
Eco57I	CTGAAG	1 cut(s)	404
EcoICRI	GAGCTC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	20
EcoT38I	GRGCYC	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	20
FaeI	CATG	3 cut(s)	79, 222, 398
FaiI	YATR	8 cut(s)	47, 77, 114, 178, 220, 396, 446, 501
FatI	CATG	3 cut(s)	75, 218, 394
FbaI	TGATCA	1 cut(s)	27
Fnu4HI	GCNGC	1 cut(s)	527
FokI	GGATG	1 cut(s)	241
FriOI	GRGCYC	1 cut(s)	130
Fsp4HI	GCNGC	1 cut(s)	527
FspBI	CTAG	2 cut(s)	297, 333
GlaI	GCGC	1 cut(s)	525
GluI	GCNGC	1 cut(s)	527
HaeIII	GGCC	1 cut(s)	389
HgaI	GACGC	1 cut(s)	613
HhaI	GCGC	1 cut(s)	526
Hin1I	GRCGYC	1 cut(s)	624
Hin1II	CATG	3 cut(s)	79, 222, 398
Hin6I	GCGC	1 cut(s)	524
HinP1I	GCGC	1 cut(s)	524
HinfI	GANTC	7 cut(s)	42, 117, 237, 290, 398, 495, 573
HphI	GGTGA	2 cut(s)	37, 658
Hpy188I	TCNGA	4 cut(s)	100, 122, 421, 488
Hpy188III	TCNNGA	1 cut(s)	641
HpyAV	CCTTC	4 cut(s)	379, 419, 608, 614
HpyCH4III	ACNGT	3 cut(s)	82, 146, 481
HpyCH4V	TGCA	2 cut(s)	394, 503
HpyF10VI	GCNNNNNNNGC	4 cut(s)	206, 229, 344, 575
HpyF3I	CTNAG	3 cut(s)	288, 343, 420
Hsp92I	GRCGYC	1 cut(s)	624
Hsp92II	CATG	3 cut(s)	79, 222, 398
HspAI	GCGC	1 cut(s)	524
Ksp22I	TGATCA	1 cut(s)	27
Kzo9I	GATC	2 cut(s)	27, 507
LmnI	GCTCC	3 cut(s)	125, 214, 428
Lsp1109I	GCAGC	1 cut(s)	538
LweI	GCATC	2 cut(s)	219, 587
MaeI	CTAG	2 cut(s)	297, 333
MaeIII	GTNAC	1 cut(s)	279
MalI	GATC	2 cut(s)	29, 509
MboI	GATC	2 cut(s)	27, 507
MboII	GAAGA	4 cut(s)	51, 140, 377, 501
MhlI	GDGCHC	2 cut(s)	87, 130
MluCI	AATT	4 cut(s)	351, 407, 530, 563
MlyI	GAGTC	3 cut(s)	246, 299, 489
MmeI	TCCRAC	2 cut(s)	43, 206
MroXI	GAANNNNTTC	1 cut(s)	70
MslI	CAYNNNNRTG	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	213
MvnI	CGCG	2 cut(s)	524, 642
MwoI	GCNNNNNNNGC	4 cut(s)	206, 229, 344, 575
NdeII	GATC	2 cut(s)	27, 507
NlaIII	CATG	3 cut(s)	79, 222, 398
NlaIV	GGNNCC	2 cut(s)	12, 210
NmuCI	GTSAC	1 cut(s)	279
NruI	TCGCGA	1 cut(s)	642
PceI	AGGCCT	1 cut(s)	389
PcsI	WCGNNNNNNNCGW	1 cut(s)	477
PdmI	GAANNNNTTC	1 cut(s)	70
PfeI	GAWTC	4 cut(s)	42, 117, 398, 573
PfoI	TCCNGGA	1 cut(s)	211
PkrI	GCNGC	1 cut(s)	528
PleI	GAGTC	3 cut(s)	245, 298, 489
PpsI	GAGTC	3 cut(s)	245, 298, 489
Psp124BI	GAGCTC	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	2 cut(s)	12, 210
PspPI	GGNCC	1 cut(s)	484
RruI	TCGCGA	1 cut(s)	642
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
RseI	CAYNNNNRTG	1 cut(s)	80
SacI	GAGCTC	1 cut(s)	130
SatI	GCNGC	1 cut(s)	527
Sau3AI	GATC	2 cut(s)	27, 507
Sau96I	GGNCC	1 cut(s)	484
SchI	GAGTC	3 cut(s)	246, 299, 489
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	2 cut(s)	87, 130
SetI	ASST	9 cut(s)	73, 130, 166, 183, 256, 324, 334, 433, 648
SfaNI	GCATC	2 cut(s)	219, 587
SfcI	CTRYAG	1 cut(s)	307
SinI	GGWCC	1 cut(s)	484
SmiMI	CAYNNNNRTG	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	655
SmoI	CTYRAG	1 cut(s)	655
Sse9I	AATT	4 cut(s)	351, 407, 530, 563
SseBI	AGGCCT	1 cut(s)	389
SspMI	CTAG	2 cut(s)	297, 333
SstI	GAGCTC	1 cut(s)	130
StuI	AGGCCT	1 cut(s)	389
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	1 cut(s)	20
TaaI	ACNGT	3 cut(s)	82, 146, 481
TaqI	TCGA	2 cut(s)	372, 405
TasI	AATT	4 cut(s)	351, 407, 530, 563
TatI	WGTACW	1 cut(s)	137
TfiI	GAWTC	4 cut(s)	42, 117, 398, 573
TseFI	GTSAC	1 cut(s)	279
TseI	GCWGC	1 cut(s)	526
Tsp45I	GTSAC	1 cut(s)	279
TspDTI	ATGAA	4 cut(s)	342, 393, 411, 530
VpaK11BI	GGWCC	1 cut(s)	484
XapI	RAATTY	2 cut(s)	351, 407
XmnI	GAANNNNTTC	1 cut(s)	70
XspI	CTAG	2 cut(s)	297, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.