Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000711

Physical Location & Seq

Genomic Coordinates Reverse (-)

55696969 .. 55698898

Gene Structure 1930 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0388600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCATTAGTTGTGATTTGTGGGCAACCCTGCAGTGGGAAGTCAATGGCTGCCGTCTGCCTAGCTGAGGCTCTCAAAGAATCCGGGTCGAATCATACAGTTAGGGTTATTGATGAAACTTCCTTTCATCTTGACCGCAATCAGAGCTATGCCAATATGCCTGCGGAGAAGAATTTAAGAGGGGTGCTGAGATCTGAAGTTGATAGATCGGTGTCAAGAGACAGTATCATAATAGTAGATTCTTTGAATAGCATCAAGGGTTATAGGTACGAGCTGTGGTGTTTGGCTCGTGCTGCAGGAATAAGGTATTGTGTGGTATATTGTGATGCTGATGAAACCCATTGTAGAAAATGGAATGAGGAGCGCAGGGAGAAGGGAGAAGATGCTTATGATGATAAGATTTTTGAAGATTTGGTAAGGAGATTTGAGACACCAGATAGAAGAAATCGGTGGGATTCGCCTTTGTTTGAGTTGTGGCCACATAGAGAAGGTATAGTAGGATCTTCTGCTGCCATTCTAGATGCGATTTCGTATCTGACAAAGAAGGTGGACTCAAAGACACGGGATGTTAAAACTTTGCAGCCAACTATTGCAACACAGAGCGCACGGTTTTCCAAGGCAAACTCTCTGTATGAGTTGGACCGAGCTACACAGGAGGTGTCCAATGCAATTGTGGAAGCACAATCACAGGCACTTGGAGGACCTTTAAATGGAGTTTCTGTTGGTCAGGGGTTACCACCTATCAATATTTCTAGACCAATAGGGCTTCCAGAGCTTCGAAGCTTGCGGCGAACTTTCATAAAATTGACAGGGCAAACGAGTTTAAGTGGGCGACCGCCACCTTCTGATGCAGACAGTGCAAAGAGGATGTTTGTTGATTACTTGAACAGGGAACTGGCAAATGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

302

Amino Acids

33.72

Weight (kDa)

8.11

Isoelectric Point (pI)

49.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KTI12	PF08433	1 - 296	6.1e-81	Chromatin associated protein KTI12
AAA_33	PF13671	3 - 145	4.4e-14	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35740 AT4G16480 AT4G16480 AT4G16480
fragaria_vesca	FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00760
malus_domestica	MD05G1108700.v1.1 MD05G1359700.v1.1 MD05G1359900.v1.1 MD10G1335300.v1.1 MD10G1335500.v1.1
prunus_persica	Prupe.4G008300_v2.0.a1 Prupe.4G008300_v2.0.a1 Prupe.4G008400_v2.0.a1
pyrus_communis	pycom05g32480 pycom05g32490 pycom10g28510
rosa_chinensis	RchiOBHm_Chr1g0370501 RchiOBHm_Chr4g0424641 RchiOBHm_Chr5g0000981 RchiOBHm_Chr5g0001001 RchiOBHm_Chr7g0190531
rosa_laevigata	RLG00000004519 RLG00000030911 RLG00000030912
rosa_multiflora	Rmu_co8357507.1_g000001 Rmu_co8503263.1_g000001 Rmu_sc0000255.1_g000023 Rmu_sc0000255.1_g000024 Rmu_sc0002558.1_g000005 Rmu_sc0007329.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075280 Rroxscaffold_1G00075290 Rroxscaffold_3G00264530
rosa_rugosa	Rorug04G0198700 Rorug04G0388100 Rorug04G0388200 Rorug04G0388300 Rorug04G0388400 Rorug04G0388500 Rorug04G0388600 Rorug04G0388700 Rorug04G0388800
rosa_samantha	Rh1AG366200 Rh1BG329000 Rh1CG342600 Rh1DG359300 Rh1DG360000 Rh4AG255600 Rh4BG261000 Rh4CG272100 Rh4DG255600 Rh5AG007800 Rh5AG007900 Rh5BG010000 Rh5BG010100 Rh5CG008500 Rh5CG008600 Rh5DG008500 Rh5DG008600
rosa_wichuraiana	Rw1G032250 Rw5G000810 Rw5G000820 Rw7G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	136, 164, 787, 836
AclWI	GGATC	1 cut(s)	508
AcoI	YGGCCR	1 cut(s)	476
AcsI	RAATTY	1 cut(s)	172
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	4 cut(s)	35, 36, 67, 710
AgsI	TTSAA	3 cut(s)	247, 407, 886
AluBI	AGCT	6 cut(s)	65, 147, 274, 647, 775, 783
AluI	AGCT	6 cut(s)	65, 147, 274, 647, 775, 783
Alw26I	GTCTC	2 cut(s)	213, 422
AlwI	GGATC	1 cut(s)	508
AoxI	GGCC	1 cut(s)	476
ApeKI	GCWGC	4 cut(s)	50, 293, 509, 580
ApoI	RAATTY	1 cut(s)	172
AspLEI	GCGC	2 cut(s)	366, 605
AspS9I	GGNCC	2 cut(s)	640, 701
AsuC2I	CCSGG	1 cut(s)	85
AsuII	TTCGAA	1 cut(s)	778
AvaII	GGWCC	2 cut(s)	640, 701
BalI	TGGCCA	1 cut(s)	478
BauI	CACGAG	1 cut(s)	288
BbvCI	CCTCAGC	1 cut(s)	66
BbvI	GCAGC	4 cut(s)	37, 280, 496, 592
BceAI	ACGGC	1 cut(s)	38
BcnI	CCSGG	1 cut(s)	85
BcoDI	GTCTC	2 cut(s)	213, 422
BfaI	CTAG	3 cut(s)	62, 518, 753
BfmI	CTRYAG	2 cut(s)	31, 294
BglII	AGATCT	1 cut(s)	191
BisI	GCNGC	5 cut(s)	51, 294, 510, 581, 788
BlsI	GCNGC	5 cut(s)	52, 295, 511, 582, 789
Bme1390I	CCNGG	1 cut(s)	85
Bme18I	GGWCC	2 cut(s)	640, 701
BmgT120I	GGNCC	2 cut(s)	640, 701
BmrFI	CCNGG	1 cut(s)	85
BmsI	GCATC	5 cut(s)	261, 316, 373, 511, 838
Bpu10I	CCTNAGC	1 cut(s)	66
Bpu14I	TTCGAA	1 cut(s)	778
BpuMI	CCSGG	1 cut(s)	85
BsaJI	CCNNGG	1 cut(s)	615
BsaXI	ACNNNNNCTCC	2 cut(s)	705, 735
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 36, 67, 710
Bse1I	ACTGG	1 cut(s)	900
BseDI	CCNNGG	1 cut(s)	615
BseGI	GGATG	2 cut(s)	571, 873
BseLI	CCNNNNNNNGG	4 cut(s)	35, 36, 67, 710
BseMII	CTCAG	2 cut(s)	57, 179
BseNI	ACTGG	1 cut(s)	900
BseRI	GAGGAG	1 cut(s)	374
BseXI	GCAGC	4 cut(s)	37, 280, 496, 592
Bsh1285I	CGRYCG	1 cut(s)	836
BshFI	GGCC	1 cut(s)	478
BsiEI	CGRYCG	1 cut(s)	836
BsiSI	CCGG	1 cut(s)	84
BslI	CCNNNNNNNGG	4 cut(s)	35, 36, 67, 710
BsmAI	GTCTC	2 cut(s)	213, 422
BsnI	GGCC	1 cut(s)	478
Bsp119I	TTCGAA	1 cut(s)	778
Bsp143I	GATC	3 cut(s)	191, 206, 500
BspACI	CCGC	4 cut(s)	136, 164, 787, 836
BspANI	GGCC	1 cut(s)	478
BspCNI	CTCAG	2 cut(s)	58, 180
BspMAI	CTGCAG	2 cut(s)	35, 298
BspPI	GGATC	1 cut(s)	508
BspT104I	TTCGAA	1 cut(s)	778
BsrI	ACTGG	1 cut(s)	900
BssECI	CCNNGG	1 cut(s)	615
BssMI	GATC	3 cut(s)	191, 206, 500
BssSI	CACGAG	1 cut(s)	288
BssT1I	CCWWGG	1 cut(s)	615
Bst2BI	CACGAG	1 cut(s)	288
Bst4CI	ACNGT	4 cut(s)	100, 224, 609, 857
BstAPI	GCANNNNNTGC	1 cut(s)	857
BstBI	TTCGAA	1 cut(s)	778
BstC8I	GCNNGC	2 cut(s)	162, 785
BstDEI	CTNAG	2 cut(s)	66, 188
BstEII	GGTNACC	1 cut(s)	732
BstENI	CCTNNNNNAGG	1 cut(s)	65
BstF5I	GGATG	2 cut(s)	571, 873
BstHHI	GCGC	2 cut(s)	366, 605
BstKTI	GATC	3 cut(s)	194, 209, 503
BstMAI	GTCTC	2 cut(s)	213, 422
BstMBI	GATC	3 cut(s)	191, 206, 500
BstMCI	CGRYCG	1 cut(s)	836
BstMWI	GCNNNNNNNGC	4 cut(s)	144, 293, 772, 857
BstPI	GGTNACC	1 cut(s)	732
BstSCI	CCNGG	1 cut(s)	83
BstSFI	CTRYAG	2 cut(s)	31, 294
BstV1I	GCAGC	4 cut(s)	37, 280, 496, 592
BstX2I	RGATCY	2 cut(s)	191, 500
BstYI	RGATCY	2 cut(s)	191, 500
BsuRI	GGCC	1 cut(s)	478
BtsCI	GGATG	2 cut(s)	571, 873
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	2 cut(s)	40, 862
Cac8I	GCNNGC	2 cut(s)	162, 785
CfoI	GCGC	2 cut(s)	366, 605
Cfr13I	GGNCC	2 cut(s)	640, 701
Csp6I	GTAC	1 cut(s)	268
CspCI	CAANNNNNGTGG	2 cut(s)	528, 563
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	2 cut(s)	66, 188
DpnI	GATC	3 cut(s)	193, 208, 502
DpnII	GATC	3 cut(s)	191, 206, 500
DraI	TTTAAA	1 cut(s)	708
EaeI	YGGCCR	1 cut(s)	476
Eco130I	CCWWGG	1 cut(s)	615
Eco47I	GGWCC	2 cut(s)	640, 701
Eco57I	CTGAAG	1 cut(s)	216
Eco91I	GGTNACC	1 cut(s)	732
EcoNI	CCTNNNNNAGG	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	701
EcoO65I	GGTNACC	1 cut(s)	732
EcoT14I	CCWWGG	1 cut(s)	615
ErhI	CCWWGG	1 cut(s)	615
Fnu4HI	GCNGC	5 cut(s)	51, 294, 510, 581, 788
FokI	GGATG	2 cut(s)	578, 880
Fsp4HI	GCNGC	5 cut(s)	51, 294, 510, 581, 788
FspBI	CTAG	3 cut(s)	62, 518, 753
GlaI	GCGC	2 cut(s)	365, 604
GluI	GCNGC	5 cut(s)	51, 294, 510, 581, 788
HaeIII	GGCC	1 cut(s)	478
HapII	CCGG	1 cut(s)	84
HhaI	GCGC	2 cut(s)	366, 605
Hin6I	GCGC	2 cut(s)	364, 603
HinP1I	GCGC	2 cut(s)	364, 603
HindIII	AAGCTT	1 cut(s)	781
HinfI	GANTC	5 cut(s)	80, 91, 239, 455, 551
HpaII	CCGG	1 cut(s)	84
Hpy166II	GTNNAC	1 cut(s)	550
Hpy188I	TCNGA	4 cut(s)	144, 196, 537, 847
Hpy188III	TCNNGA	5 cut(s)	131, 216, 518, 753, 770
Hpy8I	GTNNAC	1 cut(s)	550
HpyAV	CCTTC	4 cut(s)	367, 482, 538, 852
HpyCH4III	ACNGT	4 cut(s)	100, 224, 609, 857
HpyCH4V	TGCA	7 cut(s)	33, 296, 580, 593, 668, 851, 860
HpyF10VI	GCNNNNNNNGC	4 cut(s)	144, 293, 772, 857
HpyF3I	CTNAG	2 cut(s)	66, 188
HspAI	GCGC	2 cut(s)	364, 603
Kzo9I	GATC	3 cut(s)	191, 206, 500
LmnI	GCTCC	1 cut(s)	361
Lsp1109I	GCAGC	4 cut(s)	37, 280, 496, 592
LweI	GCATC	5 cut(s)	261, 316, 373, 511, 838
MaeI	CTAG	3 cut(s)	62, 518, 753
MaeIII	GTNAC	1 cut(s)	732
MalI	GATC	3 cut(s)	193, 208, 502
MboI	GATC	3 cut(s)	191, 206, 500
MboII	GAAGA	5 cut(s)	181, 392, 419, 453, 495
MfeI	CAATTG	1 cut(s)	669
MflI	RGATCY	2 cut(s)	191, 500
MlsI	TGGCCA	1 cut(s)	478
MluCI	AATT	3 cut(s)	172, 669, 803
MluNI	TGGCCA	1 cut(s)	478
MlyI	GAGTC	1 cut(s)	545
MmeI	TCCRAC	1 cut(s)	618
MnlI	CCTC	6 cut(s)	61, 173, 352, 649, 692, 858
Mox20I	TGGCCA	1 cut(s)	478
MscI	TGGCCA	1 cut(s)	478
MseI	TTAA	4 cut(s)	176, 570, 707, 824
Msp20I	TGGCCA	1 cut(s)	478
MspI	CCGG	1 cut(s)	84
MspR9I	CCNGG	1 cut(s)	85
MunI	CAATTG	1 cut(s)	669
MwoI	GCNNNNNNNGC	4 cut(s)	144, 293, 772, 857
NciI	CCSGG	1 cut(s)	85
NdeII	GATC	3 cut(s)	191, 206, 500
NspV	TTCGAA	1 cut(s)	778
PfeI	GAWTC	4 cut(s)	80, 91, 239, 455
PkrI	GCNGC	5 cut(s)	52, 295, 511, 582, 789
PleI	GAGTC	1 cut(s)	545
PpsI	GAGTC	1 cut(s)	545
PpuMI	RGGWCCY	1 cut(s)	701
Psp5II	RGGWCCY	1 cut(s)	701
PspEI	GGTNACC	1 cut(s)	732
PspPI	GGNCC	2 cut(s)	640, 701
PspPPI	RGGWCCY	1 cut(s)	701
PstI	CTGCAG	2 cut(s)	35, 298
PsuI	RGATCY	2 cut(s)	191, 500
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SaqAI	TTAA	4 cut(s)	176, 570, 707, 824
SatI	GCNGC	5 cut(s)	51, 294, 510, 581, 788
Sau3AI	GATC	3 cut(s)	191, 206, 500
Sau96I	GGNCC	2 cut(s)	640, 701
SchI	GAGTC	1 cut(s)	545
ScrFI	CCNGG	1 cut(s)	85
SfaNI	GCATC	5 cut(s)	261, 316, 373, 511, 838
SfcI	CTRYAG	2 cut(s)	31, 294
SfuI	TTCGAA	1 cut(s)	778
SinI	GGWCC	2 cut(s)	640, 701
Sse9I	AATT	3 cut(s)	172, 669, 803
SsiI	CCGC	4 cut(s)	136, 164, 787, 836
SspI	AATATT	1 cut(s)	748
SspMI	CTAG	3 cut(s)	62, 518, 753
StyD4I	CCNGG	1 cut(s)	83
StyI	CCWWGG	1 cut(s)	615
TaaI	ACNGT	4 cut(s)	100, 224, 609, 857
TaqI	TCGA	2 cut(s)	89, 778
TaqII	GACCGA	1 cut(s)	657
TasI	AATT	3 cut(s)	172, 669, 803
TauI	GCSGC	1 cut(s)	790
TfiI	GAWTC	4 cut(s)	80, 91, 239, 455
Tru1I	TTAA	4 cut(s)	176, 570, 707, 824
Tru9I	TTAA	4 cut(s)	176, 570, 707, 824
TscAI	CASTG	2 cut(s)	40, 862
TseI	GCWGC	4 cut(s)	50, 293, 509, 580
TspDTI	ATGAA	4 cut(s)	116, 129, 348, 787
TspRI	CASTG	2 cut(s)	40, 862
VpaK11BI	GGWCC	2 cut(s)	640, 701
XagI	CCTNNNNNAGG	1 cut(s)	65
XapI	RAATTY	1 cut(s)	172
XbaI	TCTAGA	2 cut(s)	517, 752
XcmI	CCANNNNNNNNNTGG	1 cut(s)	670
XspI	CTAG	3 cut(s)	62, 518, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.