Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000711

Physical Location & Seq

Genomic Coordinates Forward (+)

60573174 .. 60576658

Gene Structure 3485 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G032250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCTGTTGCACCAGCTCCGTGGGTGATCATAATTGGAAGAATTCTGGTTGTTTTGGGAATGGGTATGTCTTCTATGACCTCACCACTATACATCTCAGAAGCTTCTCCTGCTAGAATCCGAGGTGCTCTTGTTAGTACAAACGGTTTTCTAATTACTGGAGGTCAATTTTTGTCATACCTCATCAATCTTGCCTTCACCAAGGCTCCTGGAACCTGGCGTTGGATGCCTGGAGTAGCCGGAGTTCCTGCTGTGGTTCAGTTTGGATTGATGTGGTCATTCCCAGAGTCTCCAAGGTGGCTCTACAGAAAGAATAAGGTAGATGAAGCCAGGGCTATCTTAGAGAAAATTTATCCGGCGAATGAAGTTGAGGATGAAATGAAAGCATTGCACGAATCTGTTGAAATGGAAAAGGCTGAGGAAGGAGATGTTGGTGATGGCGTCATAGCAAAACTAAAGGGTGCATTCAGCAACCCTGTGGTCCGAAGAAGACTCTATGCAGGCATAACAGTCCAAGTAGCTCAGCAATTTGTGGGTATCAAGTATCAACACTGTCATGTATTACAGCCCAACCATTGTTCAGTTTGCTGGATTTGCTTCCAACCAAACAGCTTTAGCACTTTCTCTCATCACTTCCGGTCTCAATGTTATTGGCACTGTAATCAGTATGTGCTTTGTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

227

Amino Acids

25.37

Weight (kDa)

8.68

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	2 - 182	3.9e-46	Sugar (and other) transporter
MFS_1	PF07690	5 - 161	1.4e-08	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35740 AT4G16480 AT4G16480 AT4G16480
fragaria_vesca	FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00760
malus_domestica	MD05G1108700.v1.1 MD05G1359700.v1.1 MD05G1359900.v1.1 MD10G1335300.v1.1 MD10G1335500.v1.1
prunus_persica	Prupe.4G008300_v2.0.a1 Prupe.4G008300_v2.0.a1 Prupe.4G008400_v2.0.a1
pyrus_communis	pycom05g32480 pycom05g32490 pycom10g28510
rosa_chinensis	RchiOBHm_Chr1g0370501 RchiOBHm_Chr4g0424641 RchiOBHm_Chr5g0000981 RchiOBHm_Chr5g0001001 RchiOBHm_Chr7g0190531
rosa_laevigata	RLG00000004519 RLG00000030911 RLG00000030912
rosa_multiflora	Rmu_co8357507.1_g000001 Rmu_co8503263.1_g000001 Rmu_sc0000255.1_g000023 Rmu_sc0000255.1_g000024 Rmu_sc0002558.1_g000005 Rmu_sc0007329.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075280 Rroxscaffold_1G00075290 Rroxscaffold_3G00264530
rosa_rugosa	Rorug04G0198700 Rorug04G0388100 Rorug04G0388200 Rorug04G0388300 Rorug04G0388400 Rorug04G0388500 Rorug04G0388600 Rorug04G0388700 Rorug04G0388800
rosa_samantha	Rh1AG366200 Rh1BG329000 Rh1CG342600 Rh1DG359300 Rh1DG360000 Rh4AG255600 Rh4BG261000 Rh4CG272100 Rh4DG255600 Rh5AG007800 Rh5AG007900 Rh5BG010000 Rh5BG010100 Rh5CG008500 Rh5CG008600 Rh5DG008500 Rh5DG008600
rosa_wichuraiana	Rw1G032250 Rw5G000810 Rw5G000820 Rw7G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	42, 348
AcyI	GRCGYC	1 cut(s)	441
AfaI	GTAC	1 cut(s)	139
AfiI	CCNNNNNNNGG	1 cut(s)	222
AgsI	TTSAA	1 cut(s)	404
AjnI	CCWGG	4 cut(s)	208, 215, 229, 329
AjuI	GAANNNNNNNTTGG	4 cut(s)	205, 237, 414, 446
AluBI	AGCT	4 cut(s)	17, 104, 521, 612
AluI	AGCT	4 cut(s)	17, 104, 521, 612
Alw21I	GWGCWC	1 cut(s)	130
Alw26I	GTCTC	2 cut(s)	294, 645
ApoI	RAATTY	2 cut(s)	42, 348
AspS9I	GGNCC	1 cut(s)	481
AsuHPI	GGTGA	4 cut(s)	37, 75, 190, 446
AvaII	GGWCC	1 cut(s)	481
BbsI	GAAGAC	2 cut(s)	63, 496
Bbv12I	GWGCWC	1 cut(s)	130
BbvCI	CCTCAGC	1 cut(s)	417
BccI	CCATC	1 cut(s)	431
BciT130I	CCWGG	4 cut(s)	210, 217, 231, 331
BclI	TGATCA	1 cut(s)	27
BcoDI	GTCTC	2 cut(s)	294, 645
BfaI	CTAG	1 cut(s)	114
BfmI	CTRYAG	1 cut(s)	304
BlpI	GCTNAGC	1 cut(s)	522
Bme1390I	CCNGG	4 cut(s)	210, 217, 231, 331
Bme18I	GGWCC	1 cut(s)	481
BmgT120I	GGNCC	1 cut(s)	481
BmiI	GGNNCC	2 cut(s)	207, 214
BmrFI	CCNGG	4 cut(s)	210, 217, 231, 331
BmsI	GCATC	1 cut(s)	216
BpiI	GAAGAC	2 cut(s)	63, 496
BpmI	CTGGAG	2 cut(s)	180, 252
Bpu10I	CCTNAGC	1 cut(s)	417
Bpu1102I	GCTNAGC	1 cut(s)	522
BsaHI	GRCGYC	1 cut(s)	441
BsaI	GGTCTC	1 cut(s)	645
BsaJI	CCNNGG	5 cut(s)	20, 121, 201, 293, 330
BsaWI	WCCGGW	1 cut(s)	636
BsaXI	ACNNNNNCTCC	2 cut(s)	190, 220
Bsc4I	CCNNNNNNNGG	1 cut(s)	222
Bse1I	ACTGG	1 cut(s)	163
Bse3DI	GCAATG	1 cut(s)	386
BseBI	CCWGG	4 cut(s)	210, 217, 231, 331
BseDI	CCNNGG	5 cut(s)	20, 121, 201, 293, 330
BseGI	GGATG	2 cut(s)	231, 379
BseLI	CCNNNNNNNGG	1 cut(s)	222
BseMI	GCAATG	1 cut(s)	386
BseMII	CTCAG	3 cut(s)	111, 408, 536
BseNI	ACTGG	1 cut(s)	163
BsiHKAI	GWGCWC	1 cut(s)	130
BsiSI	CCGG	3 cut(s)	240, 356, 637
BslI	CCNNNNNNNGG	1 cut(s)	222
BsmAI	GTCTC	2 cut(s)	294, 645
BsmI	GAATGC	1 cut(s)	464
Bso31I	GGTCTC	1 cut(s)	645
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp143I	GATC	1 cut(s)	27
Bsp1720I	GCTNAGC	1 cut(s)	522
BspCNI	CTCAG	3 cut(s)	110, 409, 535
BspLI	GGNNCC	2 cut(s)	207, 214
BspTNI	GGTCTC	1 cut(s)	645
BsrDI	GCAATG	1 cut(s)	386
BsrI	ACTGG	1 cut(s)	163
BssECI	CCNNGG	5 cut(s)	20, 121, 201, 293, 330
BssMI	GATC	1 cut(s)	27
BssNI	GRCGYC	1 cut(s)	441
BssT1I	CCWWGG	2 cut(s)	201, 293
Bst2UI	CCWGG	4 cut(s)	210, 217, 231, 331
Bst4CI	ACNGT	4 cut(s)	146, 511, 554, 659
BstACI	GRCGYC	1 cut(s)	441
BstC8I	GCNNGC	1 cut(s)	502
BstDEI	CTNAG	4 cut(s)	97, 340, 417, 522
BstDSI	CCRYGG	1 cut(s)	20
BstF5I	GGATG	2 cut(s)	231, 379
BstKTI	GATC	1 cut(s)	30
BstMAI	GTCTC	2 cut(s)	294, 645
BstMBI	GATC	1 cut(s)	27
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 226, 594
BstNI	CCWGG	4 cut(s)	210, 217, 231, 331
BstSCI	CCNGG	4 cut(s)	208, 215, 229, 329
BstSFI	CTRYAG	1 cut(s)	304
BstV2I	GAAGAC	2 cut(s)	63, 496
BstXI	CCANNNNNNTGG	1 cut(s)	21
BtgI	CCRYGG	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	231, 379
BtsIMutI	CAGTG	2 cut(s)	550, 655
Cac8I	GCNNGC	1 cut(s)	502
Cfr13I	GGNCC	1 cut(s)	481
CseI	GACGC	1 cut(s)	430
Csp6I	GTAC	1 cut(s)	138
CviAII	CATG	1 cut(s)	557
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	4 cut(s)	97, 340, 417, 522
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
Eco130I	CCWWGG	2 cut(s)	201, 293
Eco31I	GGTCTC	1 cut(s)	645
Eco47I	GGWCC	1 cut(s)	481
EcoRI	GAATTC	1 cut(s)	42
EcoRII	CCWGG	4 cut(s)	208, 215, 229, 329
EcoT14I	CCWWGG	2 cut(s)	201, 293
ErhI	CCWWGG	2 cut(s)	201, 293
FaeI	CATG	1 cut(s)	560
FatI	CATG	1 cut(s)	556
FbaI	TGATCA	1 cut(s)	27
FokI	GGATG	2 cut(s)	238, 386
FspBI	CTAG	1 cut(s)	114
GsuI	CTGGAG	2 cut(s)	180, 252
HapII	CCGG	3 cut(s)	240, 356, 637
HgaI	GACGC	1 cut(s)	430
Hin1I	GRCGYC	1 cut(s)	441
Hin1II	CATG	1 cut(s)	560
HindIII	AAGCTT	1 cut(s)	102
HinfI	GANTC	4 cut(s)	117, 287, 395, 492
HpaII	CCGG	3 cut(s)	240, 356, 637
HphI	GGTGA	4 cut(s)	37, 75, 190, 446
Hpy188I	TCNGA	3 cut(s)	100, 122, 485
HpyAV	CCTTC	2 cut(s)	205, 416
HpyCH4III	ACNGT	4 cut(s)	146, 511, 554, 659
HpyCH4V	TGCA	4 cut(s)	11, 391, 464, 500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 226, 594
HpyF3I	CTNAG	4 cut(s)	97, 340, 417, 522
Hsp92I	GRCGYC	1 cut(s)	441
Hsp92II	CATG	1 cut(s)	560
Ksp22I	TGATCA	1 cut(s)	27
Kzo9I	GATC	1 cut(s)	27
LmnI	GCTCC	2 cut(s)	22, 211
LweI	GCATC	1 cut(s)	216
MaeI	CTAG	1 cut(s)	114
MalI	GATC	1 cut(s)	29
MboI	GATC	1 cut(s)	27
MboII	GAAGA	4 cut(s)	51, 63, 498, 501
MhlI	GDGCHC	1 cut(s)	130
MluCI	AATT	6 cut(s)	33, 42, 153, 167, 348, 527
MlyI	GAGTC	2 cut(s)	296, 486
MmeI	TCCRAC	2 cut(s)	203, 625
MnlI	CCTC	6 cut(s)	91, 116, 155, 191, 364, 412
MslI	CAYNNNNRTG	1 cut(s)	555
MspI	CCGG	3 cut(s)	240, 356, 637
MspR9I	CCNGG	4 cut(s)	210, 217, 231, 331
Mva1269I	GAATGC	1 cut(s)	464
MvaI	CCWGG	4 cut(s)	210, 217, 231, 331
MwoI	GCNNNNNNNGC	3 cut(s)	110, 226, 594
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	1 cut(s)	560
NlaIV	GGNNCC	2 cut(s)	207, 214
PctI	GAATGC	1 cut(s)	464
PfeI	GAWTC	2 cut(s)	117, 395
PfoI	TCCNGGA	1 cut(s)	208
PleI	GAGTC	2 cut(s)	295, 486
PpsI	GAGTC	2 cut(s)	295, 486
Psp6I	CCWGG	4 cut(s)	208, 215, 229, 329
PspGI	CCWGG	4 cut(s)	208, 215, 229, 329
PspN4I	GGNNCC	2 cut(s)	207, 214
PspPI	GGNCC	1 cut(s)	481
PsrI	GAACNNNNNNTAC	2 cut(s)	228, 260
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
RseI	CAYNNNNRTG	1 cut(s)	555
Sau3AI	GATC	1 cut(s)	27
Sau96I	GGNCC	1 cut(s)	481
SchI	GAGTC	2 cut(s)	296, 486
ScrFI	CCNGG	4 cut(s)	210, 217, 231, 331
SduI	GDGCHC	1 cut(s)	130
SfaNI	GCATC	1 cut(s)	216
SfcI	CTRYAG	1 cut(s)	304
SinI	GGWCC	1 cut(s)	481
SmiMI	CAYNNNNRTG	1 cut(s)	555
Sse9I	AATT	6 cut(s)	33, 42, 153, 167, 348, 527
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	4 cut(s)	208, 215, 229, 329
StyI	CCWWGG	2 cut(s)	201, 293
TaaI	ACNGT	4 cut(s)	146, 511, 554, 659
TasI	AATT	6 cut(s)	33, 42, 153, 167, 348, 527
TatI	WGTACW	1 cut(s)	137
TfiI	GAWTC	2 cut(s)	117, 395
TscAI	CASTG	2 cut(s)	557, 662
TspDTI	ATGAA	4 cut(s)	339, 378, 390, 395
TspGWI	ACGGA	1 cut(s)	9
TspRI	CASTG	2 cut(s)	557, 662
VpaK11BI	GGWCC	1 cut(s)	481
XapI	RAATTY	2 cut(s)	42, 348
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.