Rroxscaffold_3G00264530
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
58147522 .. 58149217
1696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00264530.1

Sequence Viewer

Length: 1377 bp
ATGGAAGACCTTACATTATGCGTCTTGCCCTCTCGGCTGGTATTGGAGGCCTCCTTTTCGATTGGATACGATACAGGTGTGATTTCTGGGGCATTGCTCTACATACGTGAGGACTTCAGTGACGTAGACAAGATGACATGGCTGCAGGAGACCATTGTGAGTATGGCAGTTGCCGGAGCCATATTTGGTGCTGCAATTGGAGGGTGGATGAACGATGCTCTTGGCCGGAGAAAGTCAATCTTGTGTGCAGATTTTGTGTTCTTCTTTGGTGCAATAGTCATGGCTTTTGCACCAGCTCCGTGGTTGATCATAATTGGAAGAATTATGGTTGGTTTGGGAGTGGGTATGGCTTCTATGACCTCACCACTATACATCTCAGAAGCTTCTCCTGCTAGTGTCCGAGGTGCTCTTGTTAGTACAAACGGCTTTCTAATTACTGGAGGTCAATTTTTGGCATACCTCATCAATCTTGCATTTACCAAGACTCCTGGAACCTGGCGTTGGATGCTTGGAGTAGCGGGAGTTCCTGCTTTGGTTCAGTTAGGATTGATGTGGTCACTCCTAGAGTCTTCAAGGTGGCTCTACAGAAAGAATAAGGCTGAGGAAGGAGATGTTGGTGATGGCATCATAGCAAAACTAATGGGTGCATTCAGCAACCCTGTGTTTGCTGGATTTGCTTCCAACCAAACGGCTTTAGCACTTCGTCTCATCACTTTTGGTCTCAATGTTGTTGGCACTGTAATCAGTATGTGCTTTGTGGATAGATATGGTTGGAGAAGGCTTATGATCATTTCTATGGTTGGAATTATCACTTGCCTGGTGGTGTTATCTGTGGCGTTTTTCCAGGCGGCAGCTCACGCTCCTCGTATTATGTCACGGCTTATATCGGGAGCTTGCGTGGCTTCGAATGAGGGCTTGAAAAAGGCATGTGGGGGAGAACATCGTGTATGCTACACAAAAGGGTGTCCAAGCAAAGTTGGATTCTTTGCAGTAATCCTTTTAGGATTGTACATCATTATCTACGCACCTGGGATGGGAACCGTACCGTGGCCGGATTGTGAAATCAGAGATACACCCTTTGAGATAGGCACATATGGAGGGATTGCTGCAGTGGCTAATTGGAGTGCCAATCTGATAGTGAGTGAGACATTTTTAACCCTCGCTCATGCTTTGGGTTCTGTTGGCACGTTCCTCCTCTTTGCTGGATTTTCTCTCATTGGACTCATATTTATTTTCTTCTTGGTTCCTGAAACCAAAGGGCTGCAATTTGAGGAGGTTGGCAATTTGCTTAAGAAAGGCTACATACCCAAGTTATTTGCTTCTAAGGCTAAGGAAACCAAGGAAGTCAAGACTGTCGATCATCTTGAGTTGGTCTGA

Protein Analysis

458

Amino Acids

49.28

Weight (kDa)

8.3

Isoelectric Point (pI)

28.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 17 - 203 1.9e-50 Sugar (and other) transporter
MFS_1 PF07690 17 - 285 1.2e-18 Major Facilitator Superfamily
Sugar_tr PF00083 322 - 428 6.7e-17 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 126
AciI CCGC 2 cut(s) 518, 848
AcoI YGGCCR 2 cut(s) 223, 1049
AcuI CTGAAG 1 cut(s) 100
AfaI GTAC 3 cut(s) 418, 1010, 1044
AfiI CCNNNNNNNGG 3 cut(s) 501, 1034, 1047
AflII CTTAAG 1 cut(s) 1289
AgsI TTSAA 2 cut(s) 573, 919
AjnI CCWGG 5 cut(s) 487, 494, 816, 843, 1027
AjuI GAANNNNNNNTTGG 4 cut(s) 484, 516, 597, 629
AluBI AGCT 4 cut(s) 296, 383, 854, 893
AluI AGCT 4 cut(s) 296, 383, 854, 893
Alw21I GWGCWC 1 cut(s) 409
Alw26I GTCTC 4 cut(s) 143, 710, 725, 1139
AoxI GGCC 3 cut(s) 48, 223, 1049
ApeKI GCWGC 5 cut(s) 142, 191, 851, 1106, 1261
AsuHPI GGTGA 2 cut(s) 354, 629
AsuII TTCGAA 1 cut(s) 905
BaeI ACNNNNGTAYC 2 cut(s) 63, 96
BbsI GAAGAC 2 cut(s) 12, 561
Bbv12I GWGCWC 1 cut(s) 409
BbvCI CCTCAGC 1 cut(s) 600
BbvI GCAGC 5 cut(s) 129, 178, 863, 1093, 1248
BccI CCATC 2 cut(s) 614, 1027
BceAI ACGGC 3 cut(s) 439, 705, 893
BciT130I CCWGG 5 cut(s) 489, 496, 818, 845, 1029
BciVI GTATCC 1 cut(s) 59
BclI TGATCA 2 cut(s) 306, 786
BcoDI GTCTC 4 cut(s) 143, 710, 725, 1139
BfaI CTAG 2 cut(s) 393, 563
BfmI CTRYAG 3 cut(s) 143, 583, 1107
BfrI CTTAAG 1 cut(s) 1289
BfuI GTATCC 1 cut(s) 59
BglI GCCNNNNNGGC 1 cut(s) 34
BisI GCNGC 6 cut(s) 143, 192, 849, 852, 1107, 1262
BlsI GCNGC 6 cut(s) 144, 193, 850, 853, 1108, 1263
Bme1390I CCNGG 5 cut(s) 489, 496, 818, 845, 1029
BmiI GGNNCC 4 cut(s) 178, 493, 1039, 1245
BmrFI CCNGG 5 cut(s) 489, 496, 818, 845, 1029
BmsI GCATC 3 cut(s) 205, 495, 633
BpiI GAAGAC 2 cut(s) 12, 561
BpmI CTGGAG 1 cut(s) 459
Bpu10I CCTNAGC 2 cut(s) 600, 1329
Bpu14I TTCGAA 1 cut(s) 905
BsaAI YACGTR 1 cut(s) 107
BsaI GGTCTC 2 cut(s) 143, 725
BsaJI CCNNGG 5 cut(s) 299, 400, 1028, 1046, 1338
BsaXI ACNNNNNCTCC 4 cut(s) 469, 499, 882, 912
Bsc4I CCNNNNNNNGG 3 cut(s) 501, 1034, 1047
Bse1I ACTGG 1 cut(s) 442
Bse3DI GCAATG 1 cut(s) 92
BseBI CCWGG 5 cut(s) 489, 496, 818, 845, 1029
BseDI CCNNGG 5 cut(s) 299, 400, 1028, 1046, 1338
BseGI GGATG 3 cut(s) 213, 510, 1038
BseLI CCNNNNNNNGG 3 cut(s) 501, 1034, 1047
BseMI GCAATG 1 cut(s) 92
BseMII CTCAG 2 cut(s) 390, 591
BseNI ACTGG 1 cut(s) 442
BseRI GAGGAG 3 cut(s) 852, 1184, 1286
BseXI GCAGC 5 cut(s) 129, 178, 863, 1093, 1248
BsgI GTGCAG 1 cut(s) 267
BshFI GGCC 3 cut(s) 50, 225, 1051
BsiHKAI GWGCWC 1 cut(s) 409
BsiSI CCGG 3 cut(s) 174, 226, 1052
BslI CCNNNNNNNGG 3 cut(s) 501, 1034, 1047
BsmAI GTCTC 4 cut(s) 143, 710, 725, 1139
BsmBI CGTCTC 1 cut(s) 710
BsmI GAATGC 1 cut(s) 647
BsnI GGCC 3 cut(s) 50, 225, 1051
Bso31I GGTCTC 2 cut(s) 143, 725
Bsp119I TTCGAA 1 cut(s) 905
Bsp1286I GDGCHC 1 cut(s) 409
Bsp1407I TGTACA 1 cut(s) 1008
Bsp143I GATC 3 cut(s) 306, 786, 1357
BspACI CCGC 2 cut(s) 518, 848
BspANI GGCC 3 cut(s) 50, 225, 1051
BspCNI CTCAG 2 cut(s) 389, 592
BspLI GGNNCC 4 cut(s) 178, 493, 1039, 1245
BspMAI CTGCAG 2 cut(s) 147, 1111
BspT104I TTCGAA 1 cut(s) 905
BspTI CTTAAG 1 cut(s) 1289
BspTNI GGTCTC 2 cut(s) 143, 725
BsrDI GCAATG 1 cut(s) 92
BsrGI TGTACA 1 cut(s) 1008
BsrI ACTGG 1 cut(s) 442
BssECI CCNNGG 5 cut(s) 299, 400, 1028, 1046, 1338
BssMI GATC 3 cut(s) 306, 786, 1357
BssT1I CCWWGG 1 cut(s) 1338
Bst2UI CCWGG 5 cut(s) 489, 496, 818, 845, 1029
Bst4CI ACNGT 4 cut(s) 739, 1042, 1047, 1354
BstAFI CTTAAG 1 cut(s) 1289
BstAUI TGTACA 1 cut(s) 1008
BstBAI YACGTR 1 cut(s) 107
BstBI TTCGAA 1 cut(s) 905
BstC8I GCNNGC 1 cut(s) 895
BstDEI CTNAG 4 cut(s) 376, 600, 1323, 1329
BstDSI CCRYGG 2 cut(s) 299, 1046
BstF5I GGATG 3 cut(s) 213, 510, 1038
BstKTI GATC 3 cut(s) 309, 789, 1360
BstMAI GTCTC 4 cut(s) 143, 710, 725, 1139
BstMBI GATC 3 cut(s) 306, 786, 1357
BstMWI GCNNNNNNNGC 8 cut(s) 34, 389, 505, 674, 857, 899, 1112, 1325
BstNI CCWGG 5 cut(s) 489, 496, 818, 845, 1029
BstNSI RCATGY 1 cut(s) 930
BstSCI CCNGG 5 cut(s) 487, 494, 816, 843, 1027
BstSFI CTRYAG 3 cut(s) 143, 583, 1107
BstV1I GCAGC 5 cut(s) 129, 178, 863, 1093, 1248
BstV2I GAAGAC 2 cut(s) 12, 561
BstXI CCANNNNNNTGG 1 cut(s) 300
BsuI GTATCC 1 cut(s) 59
BsuRI GGCC 3 cut(s) 50, 225, 1051
BtgI CCRYGG 2 cut(s) 299, 1046
BtsCI GGATG 3 cut(s) 213, 510, 1038
BtsI GCAGTG 1 cut(s) 1116
BtsIMutI CAGTG 3 cut(s) 124, 735, 1116
Cac8I GCNNGC 1 cut(s) 895
CseI GACGC 1 cut(s) 10
Csp6I GTAC 3 cut(s) 417, 1009, 1043
CviAII CATG 4 cut(s) 138, 280, 927, 1166
CviQI GTAC 3 cut(s) 417, 1009, 1043
DdeI CTNAG 4 cut(s) 376, 600, 1323, 1329
DpnI GATC 3 cut(s) 308, 788, 1359
DpnII GATC 3 cut(s) 306, 786, 1357
EaeI YGGCCR 2 cut(s) 223, 1049
Eco130I CCWWGG 1 cut(s) 1338
Eco147I AGGCCT 1 cut(s) 50
Eco31I GGTCTC 2 cut(s) 143, 725
Eco57I CTGAAG 1 cut(s) 100
EcoRII CCWGG 5 cut(s) 487, 494, 816, 843, 1027
EcoT14I CCWWGG 1 cut(s) 1338
ErhI CCWWGG 1 cut(s) 1338
Esp3I CGTCTC 1 cut(s) 710
FaeI CATG 4 cut(s) 141, 283, 930, 1169
FalI AAGNNNNNCTT 2 cut(s) 224, 256
FatI CATG 4 cut(s) 137, 279, 926, 1165
FauI CCCGC 1 cut(s) 511
FauNDI CATATG 1 cut(s) 1093
FbaI TGATCA 2 cut(s) 306, 786
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 6 cut(s) 143, 192, 849, 852, 1107, 1262
FokI GGATG 3 cut(s) 220, 517, 1045
Fsp4HI GCNGC 6 cut(s) 143, 192, 849, 852, 1107, 1262
FspBI CTAG 2 cut(s) 393, 563
GluI GCNGC 6 cut(s) 143, 192, 849, 852, 1107, 1262
GsuI CTGGAG 1 cut(s) 459
HaeIII GGCC 3 cut(s) 50, 225, 1051
HapII CCGG 3 cut(s) 174, 226, 1052
HgaI GACGC 1 cut(s) 10
Hin1II CATG 4 cut(s) 141, 283, 930, 1169
HindIII AAGCTT 1 cut(s) 381
HinfI GANTC 4 cut(s) 484, 566, 981, 1221
HpaII CCGG 3 cut(s) 174, 226, 1052
HphI GGTGA 2 cut(s) 354, 629
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 5 cut(s) 379, 401, 1067, 1134, 1376
Hpy188III TCNNGA 4 cut(s) 888, 1247, 1348, 1364
Hpy8I GTNNAC 1 cut(s) 127
HpyAV CCTTC 2 cut(s) 599, 771
HpyCH4III ACNGT 4 cut(s) 739, 1042, 1047, 1354
HpyCH4IV ACGT 3 cut(s) 106, 123, 1187
HpyF10VI GCNNNNNNNGC 8 cut(s) 34, 389, 505, 674, 857, 899, 1112, 1325
HpyF3I CTNAG 4 cut(s) 376, 600, 1323, 1329
HpySE526I ACGT 3 cut(s) 106, 123, 1187
Hsp92II CATG 4 cut(s) 141, 283, 930, 1169
Ksp22I TGATCA 2 cut(s) 306, 786
Kzo9I GATC 3 cut(s) 306, 786, 1357
LmnI GCTCC 4 cut(s) 176, 301, 865, 890
Lsp1109I GCAGC 5 cut(s) 129, 178, 863, 1093, 1248
LweI GCATC 3 cut(s) 205, 495, 633
MaeI CTAG 2 cut(s) 393, 563
MaeII ACGT 3 cut(s) 106, 123, 1187
MaeIII GTNAC 3 cut(s) 119, 555, 873
MalI GATC 3 cut(s) 308, 788, 1359
MboI GATC 3 cut(s) 306, 786, 1357
MboII GAAGA 5 cut(s) 17, 253, 330, 561, 1228
MfeI CAATTG 1 cut(s) 195
MhlI GDGCHC 1 cut(s) 409
MluCI AATT 9 cut(s) 195, 312, 321, 432, 446, 804, 1117, 1265, 1282
MlyI GAGTC 3 cut(s) 478, 575, 1215
MmeI TCCRAC 5 cut(s) 482, 705, 752, 781, 958
MseI TTAA 2 cut(s) 1154, 1290
MslI CAYNNNNRTG 1 cut(s) 794
MspCI CTTAAG 1 cut(s) 1289
MspI CCGG 3 cut(s) 174, 226, 1052
MspR9I CCNGG 5 cut(s) 489, 496, 818, 845, 1029
MunI CAATTG 1 cut(s) 195
Mva1269I GAATGC 1 cut(s) 647
MvaI CCWGG 5 cut(s) 489, 496, 818, 845, 1029
MwoI GCNNNNNNNGC 8 cut(s) 34, 389, 505, 674, 857, 899, 1112, 1325
NdeI CATATG 1 cut(s) 1093
NdeII GATC 3 cut(s) 306, 786, 1357
NlaIII CATG 4 cut(s) 141, 283, 930, 1169
NlaIV GGNNCC 4 cut(s) 178, 493, 1039, 1245
NmeAIII GCCGAG 1 cut(s) 13
NmuCI GTSAC 3 cut(s) 119, 555, 873
NspI RCATGY 1 cut(s) 930
NspV TTCGAA 1 cut(s) 905
PceI AGGCCT 1 cut(s) 50
PctI GAATGC 1 cut(s) 647
PfeI GAWTC 1 cut(s) 981
PfoI TCCNGGA 1 cut(s) 487
PkrI GCNGC 6 cut(s) 144, 193, 850, 853, 1108, 1263
PleI GAGTC 3 cut(s) 478, 574, 1215
PpsI GAGTC 3 cut(s) 478, 574, 1215
Ppu21I YACGTR 1 cut(s) 107
Psp6I CCWGG 5 cut(s) 487, 494, 816, 843, 1027
PspGI CCWGG 5 cut(s) 487, 494, 816, 843, 1027
PspN4I GGNNCC 4 cut(s) 178, 493, 1039, 1245
PsrI GAACNNNNNNTAC 2 cut(s) 507, 539
PstI CTGCAG 2 cut(s) 147, 1111
RsaI GTAC 3 cut(s) 418, 1010, 1044
RsaNI GTAC 3 cut(s) 417, 1009, 1043
RseI CAYNNNNRTG 1 cut(s) 794
SaqAI TTAA 2 cut(s) 1154, 1290
SatI GCNGC 6 cut(s) 143, 192, 849, 852, 1107, 1262
Sau3AI GATC 3 cut(s) 306, 786, 1357
SchI GAGTC 3 cut(s) 478, 575, 1215
ScrFI CCNGG 5 cut(s) 489, 496, 818, 845, 1029
SduI GDGCHC 1 cut(s) 409
SfaNI GCATC 3 cut(s) 205, 495, 633
SfcI CTRYAG 3 cut(s) 143, 583, 1107
SfuI TTCGAA 1 cut(s) 905
SmiMI CAYNNNNRTG 1 cut(s) 794
SmlI CTYRAG 2 cut(s) 1289, 1364
SmoI CTYRAG 2 cut(s) 1289, 1364
Sse9I AATT 9 cut(s) 195, 312, 321, 432, 446, 804, 1117, 1265, 1282
SseBI AGGCCT 1 cut(s) 50
SsiI CCGC 2 cut(s) 518, 848
SspMI CTAG 2 cut(s) 393, 563
StuI AGGCCT 1 cut(s) 50
StyD4I CCNGG 5 cut(s) 487, 494, 816, 843, 1027
StyI CCWWGG 1 cut(s) 1338
TaaI ACNGT 4 cut(s) 739, 1042, 1047, 1354
TaiI ACGT 3 cut(s) 109, 126, 1190
TaqI TCGA 3 cut(s) 59, 905, 1356
TasI AATT 9 cut(s) 195, 312, 321, 432, 446, 804, 1117, 1265, 1282
TatI WGTACW 2 cut(s) 416, 1008
TauI GCSGC 1 cut(s) 851
TfiI GAWTC 1 cut(s) 981
Tru1I TTAA 2 cut(s) 1154, 1290
Tru9I TTAA 2 cut(s) 1154, 1290
TscAI CASTG 3 cut(s) 124, 742, 1116
TseFI GTSAC 3 cut(s) 119, 555, 873
TseI GCWGC 5 cut(s) 142, 191, 851, 1106, 1261
Tsp45I GTSAC 3 cut(s) 119, 555, 873
TspDTI ATGAA 1 cut(s) 224
TspGWI ACGGA 1 cut(s) 288
TspRI CASTG 3 cut(s) 124, 742, 1116
Vha464I CTTAAG 1 cut(s) 1289
XceI RCATGY 1 cut(s) 930
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XmiI GTMKAC 1 cut(s) 126
XspI CTAG 2 cut(s) 393, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.