Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000711

Physical Location & Seq

Genomic Coordinates Forward (+)

9049606 .. 9051265

Gene Structure 1660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G009720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGAAGGACACCTGGGTGCTAGTAAGACGGAGTTCACACAGTGTGTGATTTCTGGGGCATTGCTCTACATACGTGAGGACTTTAGTGACGTAGACAAGATGACTTGGCTGCAGAAGACCATTGTGTATGGCAGGTGGATGAAAGATGCTCTTGGCCGGAGAAAGTCAATCTTGTGTGCAGATTTTGTGTTCTTCTTTGGTGCAATAGTCATGGCTTTTGCACCAGCTCCGTGGGTGATCATAATTGGAAGAATTCTGGTTGGTTTGGGAGTGGGTGCTCTTGTTAGTACAAACGGTTTTCTAATTACTGGAGCTCAATTTTTGGCATACCTCATCAATCTTGCATTTACCAAGACTTCTGGAACCTGGCGTTGGATGCTTGGAGTAGCCGGAGTCCCTGCTTTGGTTCAGTTAGGATTGATGTGGTCACTCCCAGAGTCTTCAAGGTGGCTCTACAGAAAGAATAAGGTAGATGAAGCCAGGGCTACCTTAGAGAAAATTTATCATGCAGATGAGGTTGAGGTTGAGGATGAAATGAAAGAATTGCATGAATCTGTCGAAATGGAAAAGGCAGAGGAAGGAGATGTTGGACTCTATGCAGGCATAACAGTCCAGGTAGTTCAGCAATTTGTAGGTATCAACACTGTCATGTATTACATCCCAACCATTGTTCAGTTTGCTGGATTTTCTTCCAACCAAACGTCTTTAGCACTTTGTCTCAACACTTCTGGTCTTAATGTTGTTGGCACTGTAATCATTATGATCATTTCTATGGTTGAAATTATCACTTGCCTGGGGGTGTTATCTGTGGTGTTTTTCCAGGCAGCAGCTCACGCTCCTCGTATTAGTAATTTGGAATCAACTCATTTTGGTAGTAACTCTACATGTCCGGCTTATGTGTCTGTCGTCCCTAATCCAGCCTCATGGATCTGCATGACATGTTTGAAAGCTCAGTACGACTTCTGTGCTAATATGGCTTCGAATGATGGCTTGAAAAAGGCGTTTGGCGGAAAACATCGTGTATGGTACACAAAAGGGTGTCCAAGCAAAGTTGGATTCATTGCAGTGATCCTTTTGGGATTGTACATCATTATCTACGCACCTGGGATGGGAACCGTATACCCTTTGAGATACAGAGGCACATGTGGAGGGATTGCTGCAGTGGCTAATTGGAGTGCCAATCTGATGGTGAGTGAGACATTTTTAACCCTCACTCATGCTTTGGGTTCTGCTGGCACGTTCCTCCTCTTTGCTGGATTTTCTCTCATTGGACTCGTATTTATTTTCTTCTTGGTTCCTGAAACCAAAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

437

Amino Acids

47.7

Weight (kDa)

7.02

Isoelectric Point (pI)

26.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	44 - 94	5e-10	Sugar (and other) transporter
Sugar_tr	PF00083	92 - 254	3.6e-32	Sugar (and other) transporter
Sugar_tr	PF00083	349 - 436	2.6e-13	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35740 AT4G16480 AT4G16480 AT4G16480
fragaria_vesca	FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00760
malus_domestica	MD05G1108700.v1.1 MD05G1359700.v1.1 MD05G1359900.v1.1 MD10G1335300.v1.1 MD10G1335500.v1.1
prunus_persica	Prupe.4G008300_v2.0.a1 Prupe.4G008300_v2.0.a1 Prupe.4G008400_v2.0.a1
pyrus_communis	pycom05g32480 pycom05g32490 pycom10g28510
rosa_chinensis	RchiOBHm_Chr1g0370501 RchiOBHm_Chr4g0424641 RchiOBHm_Chr5g0000981 RchiOBHm_Chr5g0001001 RchiOBHm_Chr7g0190531
rosa_laevigata	RLG00000004519 RLG00000030911 RLG00000030912
rosa_multiflora	Rmu_co8357507.1_g000001 Rmu_co8503263.1_g000001 Rmu_sc0000255.1_g000023 Rmu_sc0000255.1_g000024 Rmu_sc0002558.1_g000005 Rmu_sc0007329.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075280 Rroxscaffold_1G00075290 Rroxscaffold_3G00264530
rosa_rugosa	Rorug04G0198700 Rorug04G0388100 Rorug04G0388200 Rorug04G0388300 Rorug04G0388400 Rorug04G0388500 Rorug04G0388600 Rorug04G0388700 Rorug04G0388800
rosa_samantha	Rh1AG366200 Rh1BG329000 Rh1CG342600 Rh1DG359300 Rh1DG360000 Rh4AG255600 Rh4BG261000 Rh4CG272100 Rh4DG255600 Rh5AG007800 Rh5AG007900 Rh5BG010000 Rh5BG010100 Rh5CG008500 Rh5CG008600 Rh5DG008500 Rh5DG008600
rosa_wichuraiana	Rw1G032250 Rw5G000810 Rw5G000820 Rw7G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	123
Acc36I	ACCTGC	1 cut(s)	123
AccI	GTMKAC	2 cut(s)	93, 1119
AciI	CCGC	1 cut(s)	1008
AclWI	GGATC	2 cut(s)	935, 1063
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	2 cut(s)	252, 498
AdeI	CACNNNGTG	2 cut(s)	42, 44
AfaI	GTAC	4 cut(s)	289, 956, 1028, 1085
AfiI	CCNNNNNNNGG	3 cut(s)	372, 403, 1109
AflIII	ACRYGT	3 cut(s)	884, 938, 1142
AgsI	TTSAA	4 cut(s)	444, 779, 946, 994
AjnI	CCWGG	7 cut(s)	12, 365, 479, 612, 792, 819, 1102
AjuI	GAANNNNNNNTTGG	4 cut(s)	355, 387, 570, 602
AleI	CACNNNNGTG	1 cut(s)	15
AluBI	AGCT	4 cut(s)	227, 314, 830, 950
AluI	AGCT	4 cut(s)	227, 314, 830, 950
Alw21I	GWGCWC	2 cut(s)	280, 316
Alw26I	GTCTC	2 cut(s)	722, 1190
AlwI	GGATC	2 cut(s)	935, 1063
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	4 cut(s)	109, 824, 827, 1157
ApoI	RAATTY	2 cut(s)	252, 498
AsuHPI	GGTGA	2 cut(s)	247, 1201
AsuII	TTCGAA	1 cut(s)	980
BanII	GRGCYC	1 cut(s)	316
BbsI	GAAGAC	2 cut(s)	122, 432
Bbv12I	GWGCWC	2 cut(s)	280, 316
BbvI	GCAGC	4 cut(s)	96, 836, 839, 1144
BccI	CCATC	3 cut(s)	980, 1102, 1180
BcgI	CGANNNNNNTGC	2 cut(s)	947, 981
BciT130I	CCWGG	7 cut(s)	14, 367, 481, 614, 794, 821, 1104
BclI	TGATCA	2 cut(s)	237, 762
BcoDI	GTCTC	2 cut(s)	722, 1190
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	3 cut(s)	110, 454, 1158
BfuAI	ACCTGC	1 cut(s)	123
BisI	GCNGC	4 cut(s)	110, 825, 828, 1158
BlsI	GCNGC	4 cut(s)	111, 826, 829, 1159
Bme1390I	CCNGG	7 cut(s)	14, 367, 481, 614, 794, 821, 1104
BmiI	GGNNCC	3 cut(s)	364, 1114, 1296
BmrFI	CCNGG	7 cut(s)	14, 367, 481, 614, 794, 821, 1104
BmsI	GCATC	2 cut(s)	136, 366
BpiI	GAAGAC	2 cut(s)	122, 432
BpmI	CTGGAG	1 cut(s)	330
Bpu14I	TTCGAA	1 cut(s)	980
BsaAI	YACGTR	1 cut(s)	74
BsaJI	CCNNGG	5 cut(s)	13, 230, 480, 793, 1103
Bsc4I	CCNNNNNNNGG	3 cut(s)	372, 403, 1109
Bse1I	ACTGG	1 cut(s)	313
Bse3DI	GCAATG	2 cut(s)	59, 1059
BseBI	CCWGG	7 cut(s)	14, 367, 481, 614, 794, 821, 1104
BseDI	CCNNGG	5 cut(s)	13, 230, 480, 793, 1103
BseGI	GGATG	5 cut(s)	144, 381, 535, 657, 1113
BseLI	CCNNNNNNNGG	3 cut(s)	372, 403, 1109
BseMI	GCAATG	2 cut(s)	59, 1059
BseMII	CTCAG	1 cut(s)	965
BseNI	ACTGG	1 cut(s)	313
BseRI	GAGGAG	2 cut(s)	828, 1235
BseXI	GCAGC	4 cut(s)	96, 836, 839, 1144
BsgI	GTGCAG	1 cut(s)	198
BshFI	GGCC	1 cut(s)	156
BsiHKAI	GWGCWC	2 cut(s)	280, 316
BsiSI	CCGG	3 cut(s)	157, 390, 890
BslFI	GGGAC	2 cut(s)	380, 893
BslI	CCNNNNNNNGG	3 cut(s)	372, 403, 1109
BsmAI	GTCTC	2 cut(s)	722, 1190
BsmFI	GGGAC	2 cut(s)	380, 893
BsnI	GGCC	1 cut(s)	156
Bsp119I	TTCGAA	1 cut(s)	980
Bsp1286I	GDGCHC	2 cut(s)	280, 316
Bsp1407I	TGTACA	1 cut(s)	1083
Bsp143I	GATC	4 cut(s)	237, 762, 927, 1068
BspACI	CCGC	1 cut(s)	1008
BspANI	GGCC	1 cut(s)	156
BspCNI	CTCAG	1 cut(s)	964
BspLI	GGNNCC	3 cut(s)	364, 1114, 1296
BspMAI	CTGCAG	2 cut(s)	114, 1162
BspMI	ACCTGC	1 cut(s)	123
BspPI	GGATC	2 cut(s)	935, 1063
BspT104I	TTCGAA	1 cut(s)	980
BsrDI	GCAATG	2 cut(s)	59, 1059
BsrGI	TGTACA	1 cut(s)	1083
BsrI	ACTGG	1 cut(s)	313
BssECI	CCNNGG	5 cut(s)	13, 230, 480, 793, 1103
BssMI	GATC	4 cut(s)	237, 762, 927, 1068
BssNAI	GTATAC	1 cut(s)	1120
Bst1107I	GTATAC	1 cut(s)	1120
Bst2UI	CCWGG	7 cut(s)	14, 367, 481, 614, 794, 821, 1104
Bst4CI	ACNGT	6 cut(s)	42, 296, 610, 646, 751, 1117
BstAUI	TGTACA	1 cut(s)	1083
BstBAI	YACGTR	1 cut(s)	74
BstBI	TTCGAA	1 cut(s)	980
BstC8I	GCNNGC	2 cut(s)	601, 1234
BstDEI	CTNAG	2 cut(s)	490, 951
BstDSI	CCRYGG	1 cut(s)	230
BstF5I	GGATG	5 cut(s)	144, 381, 535, 657, 1113
BstKTI	GATC	4 cut(s)	240, 765, 930, 1071
BstMAI	GTCTC	2 cut(s)	722, 1190
BstMBI	GATC	4 cut(s)	237, 762, 927, 1068
BstMWI	GCNNNNNNNGC	4 cut(s)	376, 833, 974, 1163
BstNI	CCWGG	7 cut(s)	14, 367, 481, 614, 794, 821, 1104
BstNSI	RCATGY	3 cut(s)	888, 942, 1146
BstSCI	CCNGG	7 cut(s)	12, 365, 479, 612, 792, 819, 1102
BstSFI	CTRYAG	3 cut(s)	110, 454, 1158
BstV1I	GCAGC	4 cut(s)	96, 836, 839, 1144
BstV2I	GAAGAC	2 cut(s)	122, 432
BstX2I	RGATCY	1 cut(s)	927
BstXI	CCANNNNNNTGG	3 cut(s)	231, 924, 1186
BstYI	RGATCY	1 cut(s)	927
BstZ17I	GTATAC	1 cut(s)	1120
BsuRI	GGCC	1 cut(s)	156
BtgI	CCRYGG	1 cut(s)	230
BtsCI	GGATG	5 cut(s)	144, 381, 535, 657, 1113
BtsI	GCAGTG	2 cut(s)	1071, 1167
BtsIMutI	CAGTG	5 cut(s)	47, 642, 747, 1071, 1167
BveI	ACCTGC	1 cut(s)	123
Cac8I	GCNNGC	2 cut(s)	601, 1234
Csp6I	GTAC	4 cut(s)	288, 955, 1027, 1084
CviQI	GTAC	4 cut(s)	288, 955, 1027, 1084
DdeI	CTNAG	2 cut(s)	490, 951
DpnI	GATC	4 cut(s)	239, 764, 929, 1070
DpnII	GATC	4 cut(s)	237, 762, 927, 1068
DraIII	CACNNNGTG	2 cut(s)	42, 44
EaeI	YGGCCR	1 cut(s)	154
EciI	GGCGGA	1 cut(s)	1023
Ecl136II	GAGCTC	1 cut(s)	314
Eco24I	GRGCYC	1 cut(s)	316
Eco53kI	GAGCTC	1 cut(s)	314
EcoICRI	GAGCTC	1 cut(s)	314
EcoRI	GAATTC	1 cut(s)	252
EcoRII	CCWGG	7 cut(s)	12, 365, 479, 612, 792, 819, 1102
EcoT38I	GRGCYC	1 cut(s)	316
FalI	AAGNNNNNCTT	4 cut(s)	135, 167, 155, 187
FaqI	GGGAC	2 cut(s)	380, 893
FbaI	TGATCA	2 cut(s)	237, 762
FblI	GTMKAC	2 cut(s)	93, 1119
Fnu4HI	GCNGC	4 cut(s)	110, 825, 828, 1158
FokI	GGATG	5 cut(s)	151, 388, 542, 644, 1120
FriOI	GRGCYC	1 cut(s)	316
Fsp4HI	GCNGC	4 cut(s)	110, 825, 828, 1158
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	4 cut(s)	110, 825, 828, 1158
GsuI	CTGGAG	1 cut(s)	330
HaeIII	GGCC	1 cut(s)	156
HapII	CCGG	3 cut(s)	157, 390, 890
HinfI	GANTC	7 cut(s)	393, 437, 551, 591, 857, 1056, 1272
HpaII	CCGG	3 cut(s)	157, 390, 890
HphI	GGTGA	2 cut(s)	247, 1201
Hpy166II	GTNNAC	4 cut(s)	36, 94, 1029, 1120
Hpy188I	TCNGA	1 cut(s)	1185
Hpy188III	TCNNGA	2 cut(s)	360, 1298
Hpy8I	GTNNAC	4 cut(s)	36, 94, 1029, 1120
HpyAV	CCTTC	1 cut(s)	572
HpyCH4III	ACNGT	6 cut(s)	42, 296, 610, 646, 751, 1117
HpyCH4IV	ACGT	4 cut(s)	73, 90, 701, 1238
HpyF10VI	GCNNNNNNNGC	4 cut(s)	376, 833, 974, 1163
HpyF3I	CTNAG	2 cut(s)	490, 951
HpySE526I	ACGT	4 cut(s)	73, 90, 701, 1238
Ksp22I	TGATCA	2 cut(s)	237, 762
Kzo9I	GATC	4 cut(s)	237, 762, 927, 1068
LmnI	GCTCC	3 cut(s)	232, 311, 841
Lsp1109I	GCAGC	4 cut(s)	96, 836, 839, 1144
LweI	GCATC	2 cut(s)	136, 366
MaeI	CTAG	1 cut(s)	21
MaeII	ACGT	4 cut(s)	73, 90, 701, 1238
MaeIII	GTNAC	3 cut(s)	86, 426, 875
MalI	GATC	4 cut(s)	239, 764, 929, 1070
MboI	GATC	4 cut(s)	237, 762, 927, 1068
MboII	GAAGA	6 cut(s)	127, 184, 261, 432, 681, 1279
MflI	RGATCY	1 cut(s)	927
MhlI	GDGCHC	2 cut(s)	280, 316
MlyI	GAGTC	4 cut(s)	402, 446, 585, 1266
MmeI	TCCRAC	4 cut(s)	353, 568, 717, 1033
MseI	TTAA	2 cut(s)	735, 1205
MslI	CAYNNNNRTG	5 cut(s)	15, 510, 647, 770, 1064
MspI	CCGG	3 cut(s)	157, 390, 890
MspR9I	CCNGG	7 cut(s)	14, 367, 481, 614, 794, 821, 1104
MvaI	CCWGG	7 cut(s)	14, 367, 481, 614, 794, 821, 1104
MwoI	GCNNNNNNNGC	4 cut(s)	376, 833, 974, 1163
NdeII	GATC	4 cut(s)	237, 762, 927, 1068
NlaIV	GGNNCC	3 cut(s)	364, 1114, 1296
NmuCI	GTSAC	2 cut(s)	86, 426
NspI	RCATGY	3 cut(s)	888, 942, 1146
NspV	TTCGAA	1 cut(s)	980
OliI	CACNNNNGTG	1 cut(s)	15
PaqCI	CACCTGC	1 cut(s)	123
PciI	ACATGT	3 cut(s)	884, 938, 1142
PfeI	GAWTC	3 cut(s)	551, 857, 1056
PkrI	GCNGC	4 cut(s)	111, 826, 829, 1159
PleI	GAGTC	4 cut(s)	401, 445, 585, 1266
PpsI	GAGTC	4 cut(s)	401, 445, 585, 1266
Ppu21I	YACGTR	1 cut(s)	74
PscI	ACATGT	3 cut(s)	884, 938, 1142
Psp124BI	GAGCTC	1 cut(s)	316
Psp6I	CCWGG	7 cut(s)	12, 365, 479, 612, 792, 819, 1102
PspGI	CCWGG	7 cut(s)	12, 365, 479, 612, 792, 819, 1102
PspN4I	GGNNCC	3 cut(s)	364, 1114, 1296
PstI	CTGCAG	2 cut(s)	114, 1162
PsuI	RGATCY	1 cut(s)	927
RsaI	GTAC	4 cut(s)	289, 956, 1028, 1085
RsaNI	GTAC	4 cut(s)	288, 955, 1027, 1084
RseI	CAYNNNNRTG	5 cut(s)	15, 510, 647, 770, 1064
SacI	GAGCTC	1 cut(s)	316
SaqAI	TTAA	2 cut(s)	735, 1205
SatI	GCNGC	4 cut(s)	110, 825, 828, 1158
Sau3AI	GATC	4 cut(s)	237, 762, 927, 1068
SchI	GAGTC	4 cut(s)	402, 446, 585, 1266
ScrFI	CCNGG	7 cut(s)	14, 367, 481, 614, 794, 821, 1104
SduI	GDGCHC	2 cut(s)	280, 316
SfaNI	GCATC	2 cut(s)	136, 366
SfcI	CTRYAG	3 cut(s)	110, 454, 1158
SfuI	TTCGAA	1 cut(s)	980
SmiMI	CAYNNNNRTG	5 cut(s)	15, 510, 647, 770, 1064
SsiI	CCGC	1 cut(s)	1008
SspMI	CTAG	1 cut(s)	21
SstI	GAGCTC	1 cut(s)	316
StyD4I	CCNGG	7 cut(s)	12, 365, 479, 612, 792, 819, 1102
TaaI	ACNGT	6 cut(s)	42, 296, 610, 646, 751, 1117
TaiI	ACGT	4 cut(s)	76, 93, 704, 1241
TaqI	TCGA	2 cut(s)	558, 980
TatI	WGTACW	2 cut(s)	287, 1083
TfiI	GAWTC	3 cut(s)	551, 857, 1056
Tru1I	TTAA	2 cut(s)	735, 1205
Tru9I	TTAA	2 cut(s)	735, 1205
TscAI	CASTG	5 cut(s)	47, 649, 754, 1071, 1167
TseFI	GTSAC	2 cut(s)	86, 426
TseI	GCWGC	4 cut(s)	109, 824, 827, 1157
Tsp45I	GTSAC	2 cut(s)	86, 426
TspDTI	ATGAA	6 cut(s)	155, 489, 546, 551, 564, 1048
TspGWI	ACGGA	2 cut(s)	44, 219
TspRI	CASTG	5 cut(s)	47, 649, 754, 1071, 1167
XapI	RAATTY	2 cut(s)	252, 498
XceI	RCATGY	3 cut(s)	888, 942, 1146
XmiI	GTMKAC	2 cut(s)	93, 1119
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.