Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000711

Physical Location & Seq

Genomic Coordinates Reverse (-)

55672647 .. 55673739

Gene Structure 1093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0388100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTCCAGGATTATAGAGGTGACGAGTGGCGCTCACGAGGAGGTGGAGCGGTTGGAGCGTCTGATAGTGAAGGACTTTCAGAACGAGTCGAGGAGCAACAAGGAACGCTTGGCTCAGAGCCACGGCCGTGTCCGCCTCATGATCAACACCATCATCTCCACGACAGAAAGGCTCATTGAGATCTATGAGGATAACGATAATGCGAGATTGCGGCTCTTGGAGGCCAAACTGCCACCGACACCAATGCATTCGGAGGAGCCTCAAGTTGAGTTCATTGGAGAGGAAGCTAAAGGAGGCATTGGCTTCATTAGGACTGAAGATAGGGGGTCACGTGGCTCAGCACAGAACGGGGCTGCTGTAGCTGCTCAGCAAGTTGGCATTGCTTTCTTGGAAGCCAAACTGAAAAAATTAAGTGACTTACTGAGTGAGGCTATTGAACGAACAAAAGACAACATTGTTAAGAAACAGGCTTTGACATATGAAGAAATTGCAGCAAAACGTGAGGAGGAAGAGACACAGGCTGATGATACTGAAAGCTTACTGGCTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

183

Amino Acids

20.53

Weight (kDa)

5.04

Isoelectric Point (pI)

53.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35740 AT4G16480 AT4G16480 AT4G16480
fragaria_vesca	FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00750 FvH4_3g00760
malus_domestica	MD05G1108700.v1.1 MD05G1359700.v1.1 MD05G1359900.v1.1 MD10G1335300.v1.1 MD10G1335500.v1.1
prunus_persica	Prupe.4G008300_v2.0.a1 Prupe.4G008300_v2.0.a1 Prupe.4G008400_v2.0.a1
pyrus_communis	pycom05g32480 pycom05g32490 pycom10g28510
rosa_chinensis	RchiOBHm_Chr1g0370501 RchiOBHm_Chr4g0424641 RchiOBHm_Chr5g0000981 RchiOBHm_Chr5g0001001 RchiOBHm_Chr7g0190531
rosa_laevigata	RLG00000004519 RLG00000030911 RLG00000030912
rosa_multiflora	Rmu_co8357507.1_g000001 Rmu_co8503263.1_g000001 Rmu_sc0000255.1_g000023 Rmu_sc0000255.1_g000024 Rmu_sc0002558.1_g000005 Rmu_sc0007329.1_g000007
rosa_roxburghii	Rroxscaffold_1G00075280 Rroxscaffold_1G00075290 Rroxscaffold_3G00264530
rosa_rugosa	Rorug04G0198700 Rorug04G0388100 Rorug04G0388200 Rorug04G0388300 Rorug04G0388400 Rorug04G0388500 Rorug04G0388600 Rorug04G0388700 Rorug04G0388800
rosa_samantha	Rh1AG366200 Rh1BG329000 Rh1CG342600 Rh1DG359300 Rh1DG360000 Rh4AG255600 Rh4BG261000 Rh4CG272100 Rh4DG255600 Rh5AG007800 Rh5AG007900 Rh5BG010000 Rh5BG010100 Rh5CG008500 Rh5CG008600 Rh5DG008500 Rh5DG008600
rosa_wichuraiana	Rw1G032250 Rw5G000810 Rw5G000820 Rw7G009720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	49
AciI	CCGC	3 cut(s)	49, 133, 211
AcoI	YGGCCR	1 cut(s)	124
AcuI	CTGAAG	1 cut(s)	336
AcvI	CACGTG	1 cut(s)	332
AgsI	TTSAA	1 cut(s)	437
AjnI	CCWGG	1 cut(s)	5
AleI	CACNNNNGTG	1 cut(s)	126
AluBI	AGCT	3 cut(s)	287, 362, 537
AluI	AGCT	3 cut(s)	287, 362, 537
Alw26I	GTCTC	1 cut(s)	506
AoxI	GGCC	2 cut(s)	124, 222
ApeKI	GCWGC	3 cut(s)	353, 362, 491
AspLEI	GCGC	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	31
BauI	CACGAG	1 cut(s)	35
BbrPI	CACGTG	1 cut(s)	332
BbvI	GCAGC	3 cut(s)	340, 349, 503
BccI	CCATC	1 cut(s)	158
BceAI	ACGGC	2 cut(s)	111, 139
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BciT130I	CCWGG	1 cut(s)	7
BclI	TGATCA	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	506
BfmI	CTRYAG	1 cut(s)	357
BfoI	RGCGCY	1 cut(s)	33
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	4 cut(s)	212, 354, 363, 492
BlpI	GCTNAGC	2 cut(s)	337, 366
BlsI	GCNGC	4 cut(s)	213, 355, 364, 493
Bme1390I	CCNGG	1 cut(s)	7
BmiI	GGNNCC	1 cut(s)	258
BmrFI	CCNGG	1 cut(s)	7
BplI	GAGNNNNNCTC	2 cut(s)	16, 48
Bpu1102I	GCTNAGC	2 cut(s)	337, 366
BpuEI	CTTGAG	1 cut(s)	246
BsaAI	YACGTR	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	546
Bse3DI	GCAATG	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	7
BseDI	CCNNGG	1 cut(s)	121
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	4 cut(s)	128, 351, 380, 413
BseNI	ACTGG	1 cut(s)	546
BseRI	GAGGAG	4 cut(s)	53, 106, 269, 518
BseX3I	CGGCCG	1 cut(s)	124
BseXI	GCAGC	3 cut(s)	340, 349, 503
Bsh1285I	CGRYCG	1 cut(s)	127
BshFI	GGCC	2 cut(s)	126, 224
BsiEI	CGRYCG	1 cut(s)	127
BsmAI	GTCTC	1 cut(s)	506
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	2 cut(s)	126, 224
Bsp143I	GATC	2 cut(s)	141, 180
Bsp1720I	GCTNAGC	2 cut(s)	337, 366
BspACI	CCGC	3 cut(s)	49, 133, 211
BspANI	GGCC	2 cut(s)	126, 224
BspCNI	CTCAG	4 cut(s)	127, 350, 379, 414
BspHI	TCATGA	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	258
BsrBI	CCGCTC	1 cut(s)	49
BsrDI	GCAATG	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	546
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	2 cut(s)	141, 180
BssSI	CACGAG	1 cut(s)	35
Bst2BI	CACGAG	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	7
Bst6I	CTCTTC	1 cut(s)	504
BstBAI	YACGTR	1 cut(s)	332
BstDEI	CTNAG	4 cut(s)	114, 337, 366, 422
BstDSI	CCRYGG	1 cut(s)	121
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	2 cut(s)	144, 183
BstMAI	GTCTC	1 cut(s)	506
BstMBI	GATC	2 cut(s)	141, 180
BstMCI	CGRYCG	1 cut(s)	127
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 132, 359, 362
BstNI	CCWGG	1 cut(s)	7
BstSCI	CCNGG	1 cut(s)	5
BstSFI	CTRYAG	1 cut(s)	357
BstV1I	GCAGC	3 cut(s)	340, 349, 503
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BstZI	CGGCCG	1 cut(s)	124
BsuRI	GGCC	2 cut(s)	126, 224
BtgI	CCRYGG	1 cut(s)	121
CciI	TCATGA	1 cut(s)	138
CfoI	GCGC	1 cut(s)	32
CseI	GACGC	1 cut(s)	47
CviAII	CATG	1 cut(s)	139
DdeI	CTNAG	4 cut(s)	114, 337, 366, 422
DpnI	GATC	2 cut(s)	143, 182
DpnII	GATC	2 cut(s)	141, 180
EaeI	YGGCCR	1 cut(s)	124
EagI	CGGCCG	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
EciI	GGCGGA	1 cut(s)	122
EclXI	CGGCCG	1 cut(s)	124
Eco52I	CGGCCG	1 cut(s)	124
Eco57I	CTGAAG	1 cut(s)	336
Eco72I	CACGTG	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	5
EcoT22I	ATGCAT	1 cut(s)	249
FaeI	CATG	1 cut(s)	142
FaiI	YATR	6 cut(s)	14, 140, 186, 478, 480, 550
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FatI	CATG	1 cut(s)	138
FauNDI	CATATG	1 cut(s)	478
FbaI	TGATCA	1 cut(s)	141
Fnu4HI	GCNGC	4 cut(s)	212, 354, 363, 492
Fsp4HI	GCNGC	4 cut(s)	212, 354, 363, 492
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	4 cut(s)	212, 354, 363, 492
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	2 cut(s)	126, 224
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	1 cut(s)	142
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HindIII	AAGCTT	1 cut(s)	535
HinfI	GANTC	1 cut(s)	86
HphI	GGTGA	1 cut(s)	31
Hpy188I	TCNGA	4 cut(s)	63, 81, 117, 253
Hpy188III	TCNNGA	2 cut(s)	35, 139
HpyAV	CCTTC	1 cut(s)	64
HpyCH4IV	ACGT	2 cut(s)	331, 499
HpyCH4V	TGCA	2 cut(s)	247, 491
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 132, 359, 362
HpyF3I	CTNAG	4 cut(s)	114, 337, 366, 422
HpySE526I	ACGT	2 cut(s)	331, 499
Hsp92II	CATG	1 cut(s)	142
HspAI	GCGC	1 cut(s)	30
Ksp22I	TGATCA	1 cut(s)	141
Kzo9I	GATC	2 cut(s)	141, 180
LmnI	GCTCC	4 cut(s)	46, 55, 93, 256
LpnPI	CCDG	4 cut(s)	19, 452, 503, 527
Lsp1109I	GCAGC	3 cut(s)	340, 349, 503
MaeII	ACGT	2 cut(s)	331, 499
MaeIII	GTNAC	3 cut(s)	19, 327, 413
MalI	GATC	2 cut(s)	143, 182
MbiI	CCGCTC	1 cut(s)	49
MboI	GATC	2 cut(s)	141, 180
MboII	GAAGA	3 cut(s)	329, 494, 521
MflI	RGATCY	1 cut(s)	180
MluCI	AATT	2 cut(s)	407, 486
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	1 cut(s)	33
Mph1103I	ATGCAT	1 cut(s)	249
MseI	TTAA	2 cut(s)	410, 459
MslI	CAYNNNNRTG	1 cut(s)	126
MspR9I	CCNGG	1 cut(s)	7
Mva1269I	GAATGC	1 cut(s)	247
MvaI	CCWGG	1 cut(s)	7
MwoI	GCNNNNNNNGC	4 cut(s)	55, 132, 359, 362
NdeI	CATATG	1 cut(s)	478
NdeII	GATC	2 cut(s)	141, 180
NlaIII	CATG	1 cut(s)	142
NlaIV	GGNNCC	1 cut(s)	258
NmuCI	GTSAC	3 cut(s)	19, 327, 413
NsiI	ATGCAT	1 cut(s)	249
OliI	CACNNNNGTG	1 cut(s)	126
PagI	TCATGA	1 cut(s)	138
PctI	GAATGC	1 cut(s)	247
PfoI	TCCNGGA	1 cut(s)	5
PkrI	GCNGC	4 cut(s)	213, 355, 364, 493
PleI	GAGTC	1 cut(s)	94
PmaCI	CACGTG	1 cut(s)	332
PmlI	CACGTG	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	94
Ppu21I	YACGTR	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	5
PspCI	CACGTG	1 cut(s)	332
PspGI	CCWGG	1 cut(s)	5
PspN4I	GGNNCC	1 cut(s)	258
PsuI	RGATCY	1 cut(s)	180
RseI	CAYNNNNRTG	1 cut(s)	126
SaqAI	TTAA	2 cut(s)	410, 459
SatI	GCNGC	4 cut(s)	212, 354, 363, 492
Sau3AI	GATC	2 cut(s)	141, 180
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	1 cut(s)	7
SetI	ASST	7 cut(s)	21, 45, 289, 334, 364, 502, 539
SfcI	CTRYAG	1 cut(s)	357
SmiMI	CAYNNNNRTG	1 cut(s)	126
SmlI	CTYRAG	1 cut(s)	261
SmoI	CTYRAG	1 cut(s)	261
Sse9I	AATT	2 cut(s)	407, 486
SsiI	CCGC	3 cut(s)	49, 133, 211
StyD4I	CCNGG	1 cut(s)	5
TaiI	ACGT	2 cut(s)	334, 502
TaqI	TCGA	1 cut(s)	89
TasI	AATT	2 cut(s)	407, 486
TauI	GCSGC	1 cut(s)	214
Tru1I	TTAA	2 cut(s)	410, 459
Tru9I	TTAA	2 cut(s)	410, 459
TseFI	GTSAC	3 cut(s)	19, 327, 413
TseI	GCWGC	3 cut(s)	353, 362, 491
Tsp45I	GTSAC	3 cut(s)	19, 327, 413
TspDTI	ATGAA	3 cut(s)	262, 295, 495
Zsp2I	ATGCAT	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.