Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001950

Physical Location & Seq

Genomic Coordinates Forward (+)

34214329 .. 34214934

Gene Structure 606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1210900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGTATGGAGTCTTGGGTGCATTGTCTTGGACATGGCTACGACAAAAACCACATTGGAGCCAGTATAAAGGGTACAATTTTAAAGGGAGATATAATCCGGTGAGGTTTCTCAAGTCCATGCAGAAGGCAGGGCTCTATGCTCACCTTCGCATTGGCCCTTATGTTTGTGTTGAGTGGAACTTTGGGGGGCTCTCGGAGAAGCATGTAATGGAGACACCACTTCTGTCATTATCTTTGGAAGTATTTGATGGTCGACTGGATGATCCTATTAGCGTGTCCATCCGAGGAGGTTTGTATTCATCTTTCCACTTTTTTGGGAAAAATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

110

Amino Acids

12.58

Weight (kDa)

9.63

Isoelectric Point (pI)

12.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	20 - 65	1.4e-13	Glycosyl hydrolases family 35

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13750
fragaria_vesca	FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260
malus_domestica	MD03G1276100.v1.1 MD05G1210900.v1.1 MD09G1193900.v1.1 MD11G1104200.v1.1 MD11G1105200.v1.1 MD15G1317000.v1.1 MD16G1228200.v1.1
prunus_persica	Prupe.3G050200_v2.0.a1
pyrus_communis	pycom09g11040 pycom111g03560 pycom15g12320
rosa_chinensis	RchiOBHm_Chr0c25g0500881 RchiOBHm_Chr1g0331081 RchiOBHm_Chr2g0142961 RchiOBHm_Chr6g0257481 RchiOBHm_Chr6g0266311
rosa_laevigata	RLG00000020004
rosa_multiflora	Rmu_sc0006428.1_g000002 Rmu_sc0008528.1_g000001 Rmu_sc0028483.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030970 Rroxscaffold_2G00102180 Rroxscaffold_7G00183160 Rroxscaffold_7G00216290
rosa_rugosa	Rorug02G0377400
rosa_samantha	Rh2AG100700 Rh2AG430500 Rh2BG138700 Rh2BG439500 Rh2CG416200 Rh2DG449500 Rh4CG196100 Rh5DG216000 Rh6AG145200 Rh6AG372600 Rh6AG422200 Rh6DG373500
rosa_wichuraiana	Rw2G035160 Rw5G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	253
AclWI	GGATC	1 cut(s)	257
AfaI	GTAC	1 cut(s)	74
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	1 cut(s)	257
AoxI	GGCC	1 cut(s)	154
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	2 cut(s)	112, 134
BanII	GRGCYC	2 cut(s)	135, 192
BccI	CCATC	2 cut(s)	242, 287
BcoDI	GTCTC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	59
BpuEI	CTTGAG	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	283
BsaWI	WCCGGW	1 cut(s)	97
Bse1I	ACTGG	2 cut(s)	61, 261
BseDI	CCNNGG	1 cut(s)	283
BseGI	GGATG	2 cut(s)	265, 279
BseNI	ACTGG	2 cut(s)	61, 261
BseRI	GAGGAG	1 cut(s)	300
BshFI	GGCC	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	156
Bsp1286I	GDGCHC	2 cut(s)	135, 192
Bsp143I	GATC	1 cut(s)	262
BspANI	GGCC	1 cut(s)	156
BspLI	GGNNCC	1 cut(s)	59
BspPI	GGATC	1 cut(s)	257
BsrI	ACTGG	2 cut(s)	61, 261
BssECI	CCNNGG	1 cut(s)	283
BssMI	GATC	1 cut(s)	262
BstF5I	GGATG	2 cut(s)	265, 279
BstKTI	GATC	1 cut(s)	265
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	1 cut(s)	262
BstNSI	RCATGY	1 cut(s)	206
BstXI	CCANNNNNNTGG	1 cut(s)	314
BsuRI	GGCC	1 cut(s)	156
BtsCI	GGATG	2 cut(s)	265, 279
Cfr13I	GGNCC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	73
CviAII	CATG	3 cut(s)	33, 118, 203
CviJI	RGCY	5 cut(s)	37, 60, 133, 156, 190
CviKI_1	RGCY	5 cut(s)	37, 60, 133, 156, 190
CviQI	GTAC	1 cut(s)	73
DpnI	GATC	1 cut(s)	264
DpnII	GATC	1 cut(s)	262
DraI	TTTAAA	1 cut(s)	82
Eco24I	GRGCYC	2 cut(s)	135, 192
EcoT38I	GRGCYC	2 cut(s)	135, 192
FaeI	CATG	3 cut(s)	36, 121, 206
FaiI	YATR	8 cut(s)	6, 34, 66, 93, 119, 138, 162, 204
FatI	CATG	3 cut(s)	32, 117, 202
FblI	GTMKAC	1 cut(s)	253
FokI	GGATG	2 cut(s)	266, 272
FriOI	GRGCYC	2 cut(s)	135, 192
HaeIII	GGCC	1 cut(s)	156
HapII	CCGG	1 cut(s)	98
Hin1II	CATG	3 cut(s)	36, 121, 206
HincII	GTYRAC	1 cut(s)	254
HindII	GTYRAC	1 cut(s)	254
HinfI	GANTC	1 cut(s)	9
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	2 cut(s)	112, 134
Hpy166II	GTNNAC	1 cut(s)	254
Hpy188I	TCNGA	2 cut(s)	196, 284
Hpy8I	GTNNAC	1 cut(s)	254
HpyAV	CCTTC	2 cut(s)	118, 155
HpyCH4V	TGCA	2 cut(s)	20, 121
Hsp92II	CATG	3 cut(s)	36, 121, 206
Kzo9I	GATC	1 cut(s)	262
LmnI	GCTCC	1 cut(s)	57
LpnPI	CCDG	4 cut(s)	74, 111, 114, 242
MalI	GATC	1 cut(s)	264
MboI	GATC	1 cut(s)	262
MhlI	GDGCHC	2 cut(s)	135, 192
MluCI	AATT	1 cut(s)	76
MlyI	GAGTC	1 cut(s)	18
MnlI	CCTC	3 cut(s)	96, 278, 281
MseI	TTAA	1 cut(s)	81
MspI	CCGG	1 cut(s)	98
NdeII	GATC	1 cut(s)	262
NlaIII	CATG	3 cut(s)	36, 121, 206
NlaIV	GGNNCC	1 cut(s)	59
NspI	RCATGY	1 cut(s)	206
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	59
PspPI	GGNCC	1 cut(s)	155
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
SalI	GTCGAC	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	81
Sau3AI	GATC	1 cut(s)	262
Sau96I	GGNCC	1 cut(s)	155
SchI	GAGTC	1 cut(s)	18
SduI	GDGCHC	2 cut(s)	135, 192
SetI	ASST	3 cut(s)	107, 147, 292
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	1 cut(s)	76
TaqI	TCGA	1 cut(s)	253
TasI	AATT	1 cut(s)	76
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TspDTI	ATGAA	1 cut(s)	288
XceI	RCATGY	1 cut(s)	206
XmiI	GTMKAC	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.