Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0001950

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGGATGGATGGTGTCACGGTCTTGTAGGTGATGGAAGTTTAAGGAGTGAATTGGGCAGTCTTGGAATGGTTTTTGGCCAGGAAGTTATAGGCAATGAATTATCTTGGCTGGGAAGTGATCTTGGCTGGGAAGTGATGCAAATTATGTTCTGGATGTTGCCTATTTATAGGGGAGCATTGGTTGGCTTTTCCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

65

Amino Acids

7.12

Weight (kDa)

4.19

Isoelectric Point (pI)

33.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13750
fragaria_vesca	FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260
malus_domestica	MD03G1276100.v1.1 MD05G1210900.v1.1 MD09G1193900.v1.1 MD11G1104200.v1.1 MD11G1105200.v1.1 MD15G1317000.v1.1 MD16G1228200.v1.1
prunus_persica	Prupe.3G050200_v2.0.a1
pyrus_communis	pycom09g11040 pycom111g03560 pycom15g12320
rosa_chinensis	RchiOBHm_Chr0c25g0500881 RchiOBHm_Chr1g0331081 RchiOBHm_Chr2g0142961 RchiOBHm_Chr6g0257481 RchiOBHm_Chr6g0266311
rosa_laevigata	RLG00000020004
rosa_multiflora	Rmu_sc0006428.1_g000002 Rmu_sc0008528.1_g000001 Rmu_sc0028483.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030970 Rroxscaffold_2G00102180 Rroxscaffold_7G00183160 Rroxscaffold_7G00216290
rosa_rugosa	Rorug02G0377400
rosa_samantha	Rh2AG100700 Rh2AG430500 Rh2BG138700 Rh2BG439500 Rh2CG416200 Rh2DG449500 Rh4CG196100 Rh5DG216000 Rh6AG145200 Rh6AG372600 Rh6AG422200 Rh6DG373500
rosa_wichuraiana	Rw2G035160 Rw5G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	1 cut(s)	195
AluI	AGCT	1 cut(s)	195
AoxI	GGCC	1 cut(s)	76
AsuHPI	GGTGA	1 cut(s)	41
BalI	TGGCCA	1 cut(s)	78
BccI	CCATC	2 cut(s)	3, 26
BciT130I	CCWGG	1 cut(s)	80
Bme1390I	CCNGG	1 cut(s)	80
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	1 cut(s)	126
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bse3DI	GCAATG	1 cut(s)	100
BseBI	CCWGG	1 cut(s)	80
BseGI	GGATG	3 cut(s)	10, 14, 159
BseMI	GCAATG	1 cut(s)	100
BseYI	CCCAGC	2 cut(s)	109, 126
BshFI	GGCC	1 cut(s)	78
BsnI	GGCC	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	118
BspANI	GGCC	1 cut(s)	78
BsrDI	GCAATG	1 cut(s)	100
BssMI	GATC	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	1 cut(s)	20
BstF5I	GGATG	3 cut(s)	10, 14, 159
BstKTI	GATC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	118
BstMWI	GCNNNNNNNGC	1 cut(s)	192
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	78
BtsCI	GGATG	3 cut(s)	10, 14, 159
CviJI	RGCY	5 cut(s)	78, 109, 126, 186, 195
CviKI_1	RGCY	5 cut(s)	78, 109, 126, 186, 195
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
EaeI	YGGCCR	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	78
FaiI	YATR	3 cut(s)	89, 146, 168
FokI	GGATG	3 cut(s)	17, 21, 166
GsaI	CCCAGC	2 cut(s)	113, 130
HaeIII	GGCC	1 cut(s)	78
HphI	GGTGA	1 cut(s)	41
Hpy188III	TCNNGA	1 cut(s)	151
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4V	TGCA	1 cut(s)	139
HpyF10VI	GCNNNNNNNGC	1 cut(s)	192
Kzo9I	GATC	1 cut(s)	118
LmnI	GCTCC	1 cut(s)	173
LpnPI	CCDG	5 cut(s)	65, 92, 95, 112, 136
LweI	GCATC	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MlsI	TGGCCA	1 cut(s)	78
MluCI	AATT	3 cut(s)	50, 98, 141
MluNI	TGGCCA	1 cut(s)	78
Mox20I	TGGCCA	1 cut(s)	78
MscI	TGGCCA	1 cut(s)	78
MseI	TTAA	1 cut(s)	41
Msp20I	TGGCCA	1 cut(s)	78
MspA1I	CMGCKG	1 cut(s)	195
MspR9I	CCNGG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	192
NdeII	GATC	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	14
Psp6I	CCWGG	1 cut(s)	78
PspFI	CCCAGC	2 cut(s)	109, 126
PspGI	CCWGG	1 cut(s)	78
PvuII	CAGCTG	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	41
Sau3AI	GATC	1 cut(s)	118
ScrFI	CCNGG	1 cut(s)	80
SetI	ASST	2 cut(s)	31, 197
SfaNI	GCATC	1 cut(s)	126
Sse9I	AATT	3 cut(s)	50, 98, 141
StyD4I	CCNGG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	20
TasI	AATT	3 cut(s)	50, 98, 141
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TseFI	GTSAC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.