Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001950

Physical Location & Seq

Genomic Coordinates Forward (+)

22525504 .. 22526634

Gene Structure 1131 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23883

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGGAGCTAGATCAGCTTTCAACTGGTTTCTGCTTTACATGGTTTTCTTGTCTCCATGTCTTCAGCTGACACAGTGCAATTTTACCTATGATAGGGAGGCTCTTCTCGTCAATGGACAGAGGAGAATTCTCTTCTCTGGTTCCATACACTATCCTAGGAGTACTCCTGAGATGTGGGAAGATCTTATACAGAAGGCAAAAGATGGTGGCTTGGATGTTATAGACACCTATGTGTTTTGGAATCTTCATGAGCCTTCTCTGGGCAATTACACTTTTGAGGAGAGGTATGATTTGGTTCGGTTCATAAAGCTGGTTCAAACAGCAGCGCTCTATGTGCATCTTTGCATTGGACCTTATATATGTGCAGAATGGAATTTTGGGGGGTTTCCAGTTTGGCTCAAGTATGTTCCAGGCATTAGCTTCAGAACAAATAATGAGCCTTTCAAGGCAGCAATGCAGACGTTTACTCAGAAACTTGTCCAATTGATGAAGGATGAGGAATTATTTGAGTCTCAAGGTGGTCCCATTATCCTTTCTCAGATTGAGAATGAGTACGAGCACTTGAGCAAGGCTTTTGGGGAAGCCGGTCATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

198

Amino Acids

22.9

Weight (kDa)

5.36

Isoelectric Point (pI)

40.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	35 - 187	7.7e-70	Glycosyl hydrolases family 35

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13750
fragaria_vesca	FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260
malus_domestica	MD03G1276100.v1.1 MD05G1210900.v1.1 MD09G1193900.v1.1 MD11G1104200.v1.1 MD11G1105200.v1.1 MD15G1317000.v1.1 MD16G1228200.v1.1
prunus_persica	Prupe.3G050200_v2.0.a1
pyrus_communis	pycom09g11040 pycom111g03560 pycom15g12320
rosa_chinensis	RchiOBHm_Chr0c25g0500881 RchiOBHm_Chr1g0331081 RchiOBHm_Chr2g0142961 RchiOBHm_Chr6g0257481 RchiOBHm_Chr6g0266311
rosa_laevigata	RLG00000020004
rosa_multiflora	Rmu_sc0006428.1_g000002 Rmu_sc0008528.1_g000001 Rmu_sc0028483.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030970 Rroxscaffold_2G00102180 Rroxscaffold_7G00183160 Rroxscaffold_7G00216290
rosa_rugosa	Rorug02G0377400
rosa_samantha	Rh2AG100700 Rh2AG430500 Rh2BG138700 Rh2BG439500 Rh2CG416200 Rh2DG449500 Rh4CG196100 Rh5DG216000 Rh6AG145200 Rh6AG372600 Rh6AG422200 Rh6DG373500
rosa_wichuraiana	Rw2G035160 Rw5G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	126, 373
AcuI	CTGAAG	2 cut(s)	47, 406
AfaI	GTAC	2 cut(s)	163, 554
AfeI	AGCGCT	1 cut(s)	327
AfiI	CCNNNNNNNGG	2 cut(s)	93, 260
AgsI	TTSAA	3 cut(s)	22, 317, 445
AjnI	CCWGG	1 cut(s)	409
AjuI	GAANNNNNNNTTGG	2 cut(s)	360, 392
AleI	CACNNNNGTG	1 cut(s)	230
AluBI	AGCT	5 cut(s)	8, 17, 67, 310, 420
AluI	AGCT	5 cut(s)	8, 17, 67, 310, 420
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	2 cut(s)	57, 516
Aor51HI	AGCGCT	1 cut(s)	327
ApeKI	GCWGC	2 cut(s)	323, 449
ApoI	RAATTY	2 cut(s)	126, 373
AspA2I	CCTAGG	1 cut(s)	155
AspLEI	GCGC	1 cut(s)	328
AspS9I	GGNCC	2 cut(s)	350, 521
AvaII	GGWCC	2 cut(s)	350, 521
AvrII	CCTAGG	1 cut(s)	155
BarI	GAAGNNNNNNTAC	2 cut(s)	171, 203
BbsI	GAAGAC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	2 cut(s)	335, 461
BccI	CCATC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	411
BcoDI	GTCTC	2 cut(s)	57, 516
BfaI	CTAG	2 cut(s)	9, 156
BfoI	RGCGCY	1 cut(s)	329
BglII	AGATCT	1 cut(s)	181
BisI	GCNGC	2 cut(s)	324, 450
BlnI	CCTAGG	1 cut(s)	155
BlsI	GCNGC	2 cut(s)	325, 451
BmcAI	AGTACT	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	411
Bme18I	GGWCC	2 cut(s)	350, 521
BmgT120I	GGNCC	2 cut(s)	350, 521
BmiI	GGNNCC	2 cut(s)	142, 523
BmrFI	CCNGG	1 cut(s)	411
BmsI	GCATC	1 cut(s)	346
BpiI	GAAGAC	1 cut(s)	53
BpuEI	CTTGAG	3 cut(s)	383, 498, 583
BsaJI	CCNNGG	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 260
Bse118I	RCCGGY	1 cut(s)	584
Bse1I	ACTGG	2 cut(s)	29, 389
Bse3DI	GCAATG	1 cut(s)	459
BseBI	CCWGG	1 cut(s)	411
BseDI	CCNNGG	1 cut(s)	155
BseGI	GGATG	2 cut(s)	220, 499
BseLI	CCNNNNNNNGG	2 cut(s)	93, 260
BseMI	GCAATG	1 cut(s)	459
BseMII	CTCAG	3 cut(s)	159, 482, 551
BseNI	ACTGG	2 cut(s)	29, 389
BseRI	GAGGAG	2 cut(s)	136, 293
BseXI	GCAGC	2 cut(s)	335, 461
BsgI	GTGCAG	1 cut(s)	384
BsiHKAI	GWGCWC	1 cut(s)	561
BsiSI	CCGG	1 cut(s)	585
BslFI	GGGAC	1 cut(s)	507
BslI	CCNNNNNNNGG	2 cut(s)	93, 260
BsmAI	GTCTC	2 cut(s)	57, 516
BsmFI	GGGAC	1 cut(s)	507
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp143I	GATC	2 cut(s)	11, 181
BspCNI	CTCAG	3 cut(s)	160, 481, 550
BspHI	TCATGA	1 cut(s)	247
BspLI	GGNNCC	2 cut(s)	142, 523
BspQI	GCTCTTC	1 cut(s)	108
BsrDI	GCAATG	1 cut(s)	459
BsrFI	RCCGGY	1 cut(s)	584
BsrI	ACTGG	2 cut(s)	29, 389
BssAI	RCCGGY	1 cut(s)	584
BssECI	CCNNGG	1 cut(s)	155
BssMI	GATC	2 cut(s)	11, 181
BssT1I	CCWWGG	1 cut(s)	155
Bst2UI	CCWGG	1 cut(s)	411
Bst4CI	ACNGT	1 cut(s)	75
Bst6I	CTCTTC	2 cut(s)	108, 137
BstDEI	CTNAG	3 cut(s)	168, 468, 537
BstENI	CCTNNNNNAGG	1 cut(s)	91
BstF5I	GGATG	2 cut(s)	220, 499
BstH2I	RGCGCY	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	2 cut(s)	14, 184
BstMAI	GTCTC	2 cut(s)	57, 516
BstMBI	GATC	2 cut(s)	11, 181
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 334, 590
BstNI	CCWGG	1 cut(s)	411
BstSCI	CCNGG	1 cut(s)	409
BstV1I	GCAGC	2 cut(s)	335, 461
BstV2I	GAAGAC	1 cut(s)	53
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BtsCI	GGATG	2 cut(s)	220, 499
BtsIMutI	CAGTG	1 cut(s)	80
CciI	TCATGA	1 cut(s)	247
CfoI	GCGC	1 cut(s)	328
Cfr10I	RCCGGY	1 cut(s)	584
Cfr13I	GGNCC	2 cut(s)	350, 521
Csp6I	GTAC	2 cut(s)	162, 553
CviAII	CATG	5 cut(s)	40, 57, 248, 590, 594
CviQI	GTAC	2 cut(s)	162, 553
DdeI	CTNAG	3 cut(s)	168, 468, 537
DpnI	GATC	2 cut(s)	13, 183
DpnII	GATC	2 cut(s)	11, 181
Eam1104I	CTCTTC	2 cut(s)	108, 137
EarI	CTCTTC	2 cut(s)	108, 137
Eco130I	CCWWGG	1 cut(s)	155
Eco47I	GGWCC	2 cut(s)	350, 521
Eco47III	AGCGCT	1 cut(s)	327
Eco57I	CTGAAG	2 cut(s)	47, 406
EcoNI	CCTNNNNNAGG	1 cut(s)	91
EcoRI	GAATTC	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	409
EcoT14I	CCWWGG	1 cut(s)	155
EcoT22I	ATGCAT	1 cut(s)	595
ErhI	CCWWGG	1 cut(s)	155
FaeI	CATG	5 cut(s)	43, 60, 251, 593, 597
FaqI	GGGAC	1 cut(s)	507
FatI	CATG	5 cut(s)	39, 56, 247, 589, 593
Fnu4HI	GCNGC	2 cut(s)	324, 450
FokI	GGATG	2 cut(s)	227, 506
Fsp4HI	GCNGC	2 cut(s)	324, 450
FspBI	CTAG	2 cut(s)	9, 156
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	2 cut(s)	324, 450
HaeII	RGCGCY	1 cut(s)	329
HapII	CCGG	1 cut(s)	585
HhaI	GCGC	1 cut(s)	328
Hin1II	CATG	5 cut(s)	43, 60, 251, 593, 597
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HinfI	GANTC	2 cut(s)	241, 509
HpaII	CCGG	1 cut(s)	585
Hpy166II	GTNNAC	1 cut(s)	465
Hpy188I	TCNGA	3 cut(s)	425, 471, 540
Hpy188III	TCNNGA	2 cut(s)	167, 248
Hpy8I	GTNNAC	1 cut(s)	465
HpyAV	CCTTC	3 cut(s)	187, 264, 484
HpyCH4III	ACNGT	1 cut(s)	75
HpyCH4IV	ACGT	1 cut(s)	461
HpyCH4V	TGCA	6 cut(s)	78, 337, 345, 365, 457, 593
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 334, 590
HpyF3I	CTNAG	3 cut(s)	168, 468, 537
HpySE526I	ACGT	1 cut(s)	461
Hsp92II	CATG	5 cut(s)	43, 60, 251, 593, 597
HspAI	GCGC	1 cut(s)	326
Kzo9I	GATC	2 cut(s)	11, 181
LguI	GCTCTTC	1 cut(s)	108
LmnI	GCTCC	1 cut(s)	5
LpnPI	CCDG	8 cut(s)	10, 123, 180, 245, 296, 396, 402, 423
Lsp1109I	GCAGC	2 cut(s)	335, 461
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	2 cut(s)	9, 156
MaeII	ACGT	1 cut(s)	461
MalI	GATC	2 cut(s)	13, 183
MboI	GATC	2 cut(s)	11, 181
MboII	GAAGA	5 cut(s)	53, 95, 124, 191, 236
MfeI	CAATTG	1 cut(s)	482
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	561
MluCI	AATT	6 cut(s)	79, 126, 265, 373, 482, 500
MlyI	GAGTC	1 cut(s)	518
MnlI	CCTC	5 cut(s)	91, 114, 271, 276, 490
Mph1103I	ATGCAT	1 cut(s)	595
MslI	CAYNNNNRTG	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	67
MspI	CCGG	1 cut(s)	585
MspR9I	CCNGG	1 cut(s)	411
MunI	CAATTG	1 cut(s)	482
MvaI	CCWGG	1 cut(s)	411
MwoI	GCNNNNNNNGC	3 cut(s)	14, 334, 590
NdeII	GATC	2 cut(s)	11, 181
NlaIII	CATG	5 cut(s)	43, 60, 251, 593, 597
NlaIV	GGNNCC	2 cut(s)	142, 523
NsiI	ATGCAT	1 cut(s)	595
OliI	CACNNNNGTG	1 cut(s)	230
PagI	TCATGA	1 cut(s)	247
PciSI	GCTCTTC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	241
PkrI	GCNGC	2 cut(s)	325, 451
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
Psp6I	CCWGG	1 cut(s)	409
PspGI	CCWGG	1 cut(s)	409
PspN4I	GGNNCC	2 cut(s)	142, 523
PspPI	GGNCC	2 cut(s)	350, 521
PsuI	RGATCY	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	67
RsaI	GTAC	2 cut(s)	163, 554
RsaNI	GTAC	2 cut(s)	162, 553
RseI	CAYNNNNRTG	1 cut(s)	230
SapI	GCTCTTC	1 cut(s)	108
SatI	GCNGC	2 cut(s)	324, 450
Sau3AI	GATC	2 cut(s)	11, 181
Sau96I	GGNCC	2 cut(s)	350, 521
ScaI	AGTACT	1 cut(s)	163
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	1 cut(s)	411
SduI	GDGCHC	1 cut(s)	561
SfaNI	GCATC	1 cut(s)	346
SinI	GGWCC	2 cut(s)	350, 521
SmiMI	CAYNNNNRTG	1 cut(s)	230
SmlI	CTYRAG	3 cut(s)	398, 513, 562
SmoI	CTYRAG	3 cut(s)	398, 513, 562
Sse9I	AATT	6 cut(s)	79, 126, 265, 373, 482, 500
SspMI	CTAG	2 cut(s)	9, 156
StyD4I	CCNGG	1 cut(s)	409
StyI	CCWWGG	1 cut(s)	155
TaaI	ACNGT	1 cut(s)	75
TaiI	ACGT	1 cut(s)	464
TasI	AATT	6 cut(s)	79, 126, 265, 373, 482, 500
TatI	WGTACW	1 cut(s)	161
TfiI	GAWTC	1 cut(s)	241
TscAI	CASTG	1 cut(s)	80
TseI	GCWGC	2 cut(s)	323, 449
TspDTI	ATGAA	3 cut(s)	236, 292, 503
TspRI	CASTG	1 cut(s)	80
VpaK11BI	GGWCC	2 cut(s)	350, 521
XagI	CCTNNNNNAGG	1 cut(s)	91
XapI	RAATTY	2 cut(s)	126, 373
XmaJI	CCTAGG	1 cut(s)	155
XspI	CTAG	2 cut(s)	9, 156
ZrmI	AGTACT	1 cut(s)	163
Zsp2I	ATGCAT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.