Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001950

Physical Location & Seq

Genomic Coordinates Forward (+)

22583734 .. 22590027

Gene Structure 6294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG145200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGGAGCTAGCTCAGCTTTGAGCTGGGTTCTGCTCTGCTTAGTTGTGCTGTCTCTACGTTTTCAGCTGATACAGTGCAATGTTAGCTATGACAGGAAGGCTCTTATCATTAATGGGCAGAGGAGAATTCTCTTTTCTGGGTCCATACACTATCCTAGAAGTACTCCTGAGATGTGGGAAGGTCTTATAGAGAAGGCCAAAGATGGTGGGTTGGATGTTATAGACACCTATGTGTTTTGGAATCTTCATGAGCCATCTCCTGGCAATGTACTGGGATTTCCAGTTTGGCTCAAGTATGTTCCAGGCATTAGCTTCAGAACAGATAATGAGCCTTTCAAGATTGAGAATGAATATGAGCCAGAAAGCAAGCTTTTTGGTGCTGCTGGTCATGCATACATGACTTGGGCTGCAGAGATGGCTGTTGGAATGGGTACTGGTGTTCCATGGGTCATGTGCAAGGAAGAGGATGCCCCAGACCCAGTGAAGTGTATAGGTAAGCAGAAATGTTCATTGACCATATCAGATGCGAATTTTGGGATGGATCCATGTCCAAGCATGCTGAAAAAATTATCTGTTGAAGCTGTTTGTGCCCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

198

Amino Acids

21.92

Weight (kDa)

5.41

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	35 - 89	4.9e-22	Glycosyl hydrolases family 35
SUEL_Lectin	PF02140	154 - 196	3.9e-08	D-galactoside/L-rhamnose binding SUEL lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13750
fragaria_vesca	FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260
malus_domestica	MD03G1276100.v1.1 MD05G1210900.v1.1 MD09G1193900.v1.1 MD11G1104200.v1.1 MD11G1105200.v1.1 MD15G1317000.v1.1 MD16G1228200.v1.1
prunus_persica	Prupe.3G050200_v2.0.a1
pyrus_communis	pycom09g11040 pycom111g03560 pycom15g12320
rosa_chinensis	RchiOBHm_Chr0c25g0500881 RchiOBHm_Chr1g0331081 RchiOBHm_Chr2g0142961 RchiOBHm_Chr6g0257481 RchiOBHm_Chr6g0266311
rosa_laevigata	RLG00000020004
rosa_multiflora	Rmu_sc0006428.1_g000002 Rmu_sc0008528.1_g000001 Rmu_sc0028483.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030970 Rroxscaffold_2G00102180 Rroxscaffold_7G00183160 Rroxscaffold_7G00216290
rosa_rugosa	Rorug02G0377400
rosa_samantha	Rh2AG100700 Rh2AG430500 Rh2BG138700 Rh2BG439500 Rh2CG416200 Rh2DG449500 Rh4CG196100 Rh5DG216000 Rh6AG145200 Rh6AG372600 Rh6AG422200 Rh6DG373500
rosa_wichuraiana	Rw2G035160 Rw5G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	260
AclWI	GGATC	2 cut(s)	536, 549
AcsI	RAATTY	2 cut(s)	126, 529
AcuI	CTGAAG	1 cut(s)	298
AfaI	GTAC	3 cut(s)	163, 270, 433
AfiI	CCNNNNNNNGG	1 cut(s)	260
AgsI	TTSAA	2 cut(s)	337, 578
AjnI	CCWGG	2 cut(s)	259, 301
AleI	CACNNNNGTG	1 cut(s)	230
AluBI	AGCT	9 cut(s)	8, 12, 17, 24, 67, 87, 312, 370, 581
AluI	AGCT	9 cut(s)	8, 12, 17, 24, 67, 87, 312, 370, 581
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	2 cut(s)	536, 549
AoxI	GGCC	1 cut(s)	195
ApeKI	GCWGC	2 cut(s)	380, 407
ApoI	RAATTY	2 cut(s)	126, 529
AseI	ATTAAT	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	141
AsuNHI	GCTAGC	1 cut(s)	8
AvaII	GGWCC	1 cut(s)	141
BaeGI	GKGCMC	1 cut(s)	592
BaeI	ACNNNNGTAYC	2 cut(s)	423, 456
BamHI	GGATCC	1 cut(s)	541
BbvI	GCAGC	2 cut(s)	367, 394
BccI	CCATC	4 cut(s)	197, 262, 409, 532
BciT130I	CCWGG	2 cut(s)	261, 303
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	2 cut(s)	9, 156
BfmI	CTRYAG	1 cut(s)	408
BisI	GCNGC	2 cut(s)	381, 408
BlpI	GCTNAGC	1 cut(s)	13
BlsI	GCNGC	2 cut(s)	382, 409
BmcAI	AGTACT	1 cut(s)	163
Bme1390I	CCNGG	2 cut(s)	261, 303
Bme18I	GGWCC	1 cut(s)	141
BmgT120I	GGNCC	1 cut(s)	141
BmiI	GGNNCC	2 cut(s)	142, 543
BmrFI	CCNGG	2 cut(s)	261, 303
BmrI	ACTGGG	2 cut(s)	281, 473
BmsI	GCATC	2 cut(s)	457, 514
BmtI	GCTAGC	1 cut(s)	12
BmuI	ACTGGG	2 cut(s)	281, 473
Bpu1102I	GCTNAGC	1 cut(s)	13
BpuEI	CTTGAG	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	443
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse1I	ACTGG	4 cut(s)	276, 281, 439, 479
Bse3DI	GCAATG	2 cut(s)	85, 271
BseBI	CCWGG	2 cut(s)	261, 303
BseDI	CCNNGG	1 cut(s)	443
BseGI	GGATG	3 cut(s)	220, 472, 543
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMI	GCAATG	2 cut(s)	85, 271
BseMII	CTCAG	2 cut(s)	27, 159
BseNI	ACTGG	4 cut(s)	276, 281, 439, 479
BseRI	GAGGAG	1 cut(s)	136
BseSI	GKGCMC	1 cut(s)	592
BseXI	GCAGC	2 cut(s)	367, 394
BseYI	CCCAGC	1 cut(s)	24
BshFI	GGCC	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmAI	GTCTC	1 cut(s)	57
BsnI	GGCC	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	592
Bsp143I	GATC	1 cut(s)	541
Bsp1720I	GCTNAGC	1 cut(s)	13
Bsp19I	CCATGG	1 cut(s)	443
BspANI	GGCC	1 cut(s)	197
BspCNI	CTCAG	2 cut(s)	26, 160
BspHI	TCATGA	1 cut(s)	247
BspLI	GGNNCC	2 cut(s)	142, 543
BspMAI	CTGCAG	1 cut(s)	412
BspOI	GCTAGC	1 cut(s)	12
BspPI	GGATC	2 cut(s)	536, 549
BsrDI	GCAATG	2 cut(s)	85, 271
BsrI	ACTGG	4 cut(s)	276, 281, 439, 479
BssECI	CCNNGG	1 cut(s)	443
BssMI	GATC	1 cut(s)	541
BssT1I	CCWWGG	1 cut(s)	443
Bst2UI	CCWGG	2 cut(s)	261, 303
Bst4CI	ACNGT	1 cut(s)	75
Bst6I	CTCTTC	1 cut(s)	456
BstC8I	GCNNGC	3 cut(s)	10, 368, 557
BstDEI	CTNAG	3 cut(s)	13, 40, 168
BstDSI	CCRYGG	1 cut(s)	443
BstF5I	GGATG	3 cut(s)	220, 472, 543
BstKTI	GATC	1 cut(s)	544
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	541
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 84, 389, 416, 587
BstNI	CCWGG	2 cut(s)	261, 303
BstNSI	RCATGY	1 cut(s)	559
BstSCI	CCNGG	2 cut(s)	259, 301
BstSFI	CTRYAG	1 cut(s)	408
BstSLI	GKGCMC	1 cut(s)	592
BstV1I	GCAGC	2 cut(s)	367, 394
BstX2I	RGATCY	1 cut(s)	541
BstYI	RGATCY	1 cut(s)	541
BsuRI	GGCC	1 cut(s)	197
BtgI	CCRYGG	1 cut(s)	443
BtsCI	GGATG	3 cut(s)	220, 472, 543
BtsIMutI	CAGTG	2 cut(s)	80, 486
Cac8I	GCNNGC	3 cut(s)	10, 368, 557
CciI	TCATGA	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	141
Csp6I	GTAC	3 cut(s)	162, 269, 432
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CviAII	CATG	7 cut(s)	248, 389, 397, 444, 451, 546, 556
CviQI	GTAC	3 cut(s)	162, 269, 432
DdeI	CTNAG	3 cut(s)	13, 40, 168
DpnI	GATC	1 cut(s)	543
DpnII	GATC	1 cut(s)	541
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Eco130I	CCWWGG	1 cut(s)	443
Eco47I	GGWCC	1 cut(s)	141
Eco57I	CTGAAG	1 cut(s)	298
EcoRI	GAATTC	1 cut(s)	126
EcoRII	CCWGG	2 cut(s)	259, 301
EcoT14I	CCWWGG	1 cut(s)	443
EcoT22I	ATGCAT	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	443
FaeI	CATG	7 cut(s)	251, 392, 400, 447, 454, 549, 559
FatI	CATG	7 cut(s)	247, 388, 396, 443, 450, 545, 555
Fnu4HI	GCNGC	2 cut(s)	381, 408
FokI	GGATG	3 cut(s)	227, 479, 550
Fsp4HI	GCNGC	2 cut(s)	381, 408
FspBI	CTAG	2 cut(s)	9, 156
GluI	GCNGC	2 cut(s)	381, 408
GsaI	CCCAGC	1 cut(s)	28
HaeIII	GGCC	1 cut(s)	197
Hin1II	CATG	7 cut(s)	251, 392, 400, 447, 454, 549, 559
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	1 cut(s)	241
Hpy188I	TCNGA	2 cut(s)	317, 523
Hpy188III	TCNNGA	3 cut(s)	167, 248, 337
HpyAV	CCTTC	3 cut(s)	91, 173, 187
HpyCH4III	ACNGT	1 cut(s)	75
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	4 cut(s)	78, 392, 410, 456
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 84, 389, 416, 587
HpyF3I	CTNAG	3 cut(s)	13, 40, 168
HpySE526I	ACGT	1 cut(s)	58
Hsp92II	CATG	7 cut(s)	251, 392, 400, 447, 454, 549, 559
Kzo9I	GATC	1 cut(s)	541
LmnI	GCTCC	1 cut(s)	5
Lsp1109I	GCAGC	2 cut(s)	367, 394
LweI	GCATC	2 cut(s)	457, 514
MaeI	CTAG	2 cut(s)	9, 156
MaeII	ACGT	1 cut(s)	58
MalI	GATC	1 cut(s)	543
MboI	GATC	1 cut(s)	541
MboII	GAAGA	2 cut(s)	236, 473
MflI	RGATCY	1 cut(s)	541
MhlI	GDGCHC	1 cut(s)	592
MluCI	AATT	3 cut(s)	126, 529, 566
MmeI	TCCRAC	2 cut(s)	192, 403
MnlI	CCTC	2 cut(s)	114, 457
Mph1103I	ATGCAT	1 cut(s)	394
MseI	TTAA	1 cut(s)	111
MslI	CAYNNNNRTG	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	67
MspR9I	CCNGG	2 cut(s)	261, 303
MvaI	CCWGG	2 cut(s)	261, 303
MwoI	GCNNNNNNNGC	5 cut(s)	14, 84, 389, 416, 587
NcoI	CCATGG	1 cut(s)	443
NdeII	GATC	1 cut(s)	541
NheI	GCTAGC	1 cut(s)	8
NlaIII	CATG	7 cut(s)	251, 392, 400, 447, 454, 549, 559
NlaIV	GGNNCC	2 cut(s)	142, 543
NsiI	ATGCAT	1 cut(s)	394
NspI	RCATGY	1 cut(s)	559
OliI	CACNNNNGTG	1 cut(s)	230
PaeI	GCATGC	1 cut(s)	559
PagI	TCATGA	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	241
PflMI	CCANNNNNTGG	1 cut(s)	260
PkrI	GCNGC	2 cut(s)	382, 409
PshBI	ATTAAT	1 cut(s)	111
Psp6I	CCWGG	2 cut(s)	259, 301
PspFI	CCCAGC	1 cut(s)	24
PspGI	CCWGG	2 cut(s)	259, 301
PspN4I	GGNNCC	2 cut(s)	142, 543
PspPI	GGNCC	1 cut(s)	141
PstI	CTGCAG	1 cut(s)	412
PsuI	RGATCY	1 cut(s)	541
PvuII	CAGCTG	1 cut(s)	67
RsaI	GTAC	3 cut(s)	163, 270, 433
RsaNI	GTAC	3 cut(s)	162, 269, 432
RseI	CAYNNNNRTG	1 cut(s)	230
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	2 cut(s)	381, 408
Sau3AI	GATC	1 cut(s)	541
Sau96I	GGNCC	1 cut(s)	141
ScaI	AGTACT	1 cut(s)	163
ScrFI	CCNGG	2 cut(s)	261, 303
SduI	GDGCHC	1 cut(s)	592
SfaNI	GCATC	2 cut(s)	457, 514
SfcI	CTRYAG	1 cut(s)	408
SinI	GGWCC	1 cut(s)	141
SmiMI	CAYNNNNRTG	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SphI	GCATGC	1 cut(s)	559
Sse9I	AATT	3 cut(s)	126, 529, 566
SspMI	CTAG	2 cut(s)	9, 156
StyD4I	CCNGG	2 cut(s)	259, 301
StyI	CCWWGG	1 cut(s)	443
TaaI	ACNGT	1 cut(s)	75
TaiI	ACGT	1 cut(s)	61
TasI	AATT	3 cut(s)	126, 529, 566
TatI	WGTACW	2 cut(s)	161, 268
TfiI	GAWTC	1 cut(s)	241
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	2 cut(s)	80, 486
TseI	GCWGC	2 cut(s)	380, 407
TspDTI	ATGAA	3 cut(s)	236, 363, 498
TspRI	CASTG	2 cut(s)	80, 486
Van91I	CCANNNNNTGG	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	141
VspI	ATTAAT	1 cut(s)	111
XapI	RAATTY	2 cut(s)	126, 529
XceI	RCATGY	1 cut(s)	559
XspI	CTAG	2 cut(s)	9, 156
ZrmI	AGTACT	1 cut(s)	163
Zsp2I	ATGCAT	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.