Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001950

Physical Location & Seq

Genomic Coordinates Forward (+)

24377375 .. 24389375

Gene Structure 12001 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG216000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTCGGAAGCAACATCCACAACAAAGACACAAAGCGGCTCAGTTGATCAGTGTGCAACAAATAGGTCTAACATGTCCGTGATGGTCGATCATGATGGAAGAGCCATCACAATTAATGGTGATAGAAGAATCATAATATCTGGCTCTATTCAGTACCCACGTAGTACTCCTGAAATGTGGCCTGACTTAATCCAAAAGGAAAAAGATGGAGGCCTTAATGCCATTGAGACTTATGTCTTTTGGAATGCACATGAACCTCTGCGTAGGCAGTATGACTTTTCAGGAAACCAGGACCTGGTGAGATTCATTCAGTCCATCCAAAAGGCAGGGCTCTATGCTGTTCTTCGGATTGGACCATATGTTTGTGCAGAATGGAATTATGGAGGTTTTCCAGTGTGGCTGCATAACATACCAGGCATCAAATTGAGAACAAACAATGATATCTATAAGAATGAGATGCAAAACTTTACAACTTTGATAGTGGACATGATGAAGTACGAGAATCTTTTTGCTTCACAAGGGGGACCTATTATACTTGCCCAGATTGAAAACGAGTATGGGAATGTTATGCGCTCGTATGGCGATGAAGGAAAGAAATATATACGATGGTGTGCTGATTTAGCTGAATCTTACCAGATTGGTGTACCATGGATTCTGTGCCAACAGGAAGATACTCCACAATCAATGATTAATACTTGCAATGGCTGGTATTGTGATCAATTTAAGCCTTCATACAACACTAGCCCGAAGATGTGGACAGAAAATTGGACTGGATGGTTAATGTGCAAAGATCAAAATGCAGAAGGTGCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BetaGal_dom4_5 Gal_Lectin Glyco_hydro_35

Protein Analysis

271

Amino Acids

31.06

Weight (kDa)

5.32

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	36 - 261	6.8e-85	Glycosyl hydrolases family 35
Glyco_hydro_42	PF02449	57 - 204	6.5e-07	Beta-galactosidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13750
fragaria_vesca	FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260
malus_domestica	MD03G1276100.v1.1 MD05G1210900.v1.1 MD09G1193900.v1.1 MD11G1104200.v1.1 MD11G1105200.v1.1 MD15G1317000.v1.1 MD16G1228200.v1.1
prunus_persica	Prupe.3G050200_v2.0.a1
pyrus_communis	pycom09g11040 pycom111g03560 pycom15g12320
rosa_chinensis	RchiOBHm_Chr0c25g0500881 RchiOBHm_Chr1g0331081 RchiOBHm_Chr2g0142961 RchiOBHm_Chr6g0257481 RchiOBHm_Chr6g0266311
rosa_laevigata	RLG00000020004
rosa_multiflora	Rmu_sc0006428.1_g000002 Rmu_sc0008528.1_g000001 Rmu_sc0028483.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030970 Rroxscaffold_2G00102180 Rroxscaffold_7G00183160 Rroxscaffold_7G00216290
rosa_rugosa	Rorug02G0377400
rosa_samantha	Rh2AG100700 Rh2AG430500 Rh2BG138700 Rh2BG439500 Rh2CG416200 Rh2DG449500 Rh4CG196100 Rh5DG216000 Rh6AG145200 Rh6AG372600 Rh6AG422200 Rh6DG373500
rosa_wichuraiana	Rw2G035160 Rw5G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	295
AciI	CCGC	1 cut(s)	36
AfaI	GTAC	4 cut(s)	155, 166, 497, 645
AfiI	CCNNNNNNNGG	1 cut(s)	295
AflIII	ACRYGT	1 cut(s)	72
AgsI	TTSAA	1 cut(s)	548
AjnI	CCWGG	3 cut(s)	288, 294, 412
AluBI	AGCT	1 cut(s)	623
AluI	AGCT	1 cut(s)	623
Alw26I	GTCTC	1 cut(s)	221
AlwNI	CAGNNNCTG	1 cut(s)	295
AoxI	GGCC	2 cut(s)	179, 211
ApeKI	GCWGC	1 cut(s)	400
ArsI	GACNNNNNNTTYG	2 cut(s)	345, 377
AseI	ATTAAT	2 cut(s)	114, 690
AspLEI	GCGC	1 cut(s)	573
AspS9I	GGNCC	3 cut(s)	292, 353, 524
AsuHPI	GGTGA	2 cut(s)	131, 310
AvaII	GGWCC	3 cut(s)	292, 353, 524
BanII	GRGCYC	1 cut(s)	333
BbvI	GCAGC	1 cut(s)	387
BccI	CCATC	7 cut(s)	76, 89, 113, 200, 323, 600, 768
BciT130I	CCWGG	3 cut(s)	290, 296, 414
BclI	TGATCA	2 cut(s)	46, 715
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	1 cut(s)	741
BisI	GCNGC	2 cut(s)	37, 401
BlsI	GCNGC	2 cut(s)	38, 402
BmcAI	AGTACT	1 cut(s)	166
Bme1390I	CCNGG	3 cut(s)	290, 296, 414
Bme18I	GGWCC	3 cut(s)	292, 353, 524
BmgT120I	GGNCC	3 cut(s)	292, 353, 524
BmiI	GGNNCC	1 cut(s)	525
BmrFI	CCNGG	3 cut(s)	290, 296, 414
BmsI	GCATC	2 cut(s)	426, 447
BoxI	GACNNNNGTC	1 cut(s)	233
BsaAI	YACGTR	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	647
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse1I	ACTGG	2 cut(s)	392, 775
Bse3DI	GCAATG	1 cut(s)	706
BseBI	CCWGG	3 cut(s)	290, 296, 414
BseDI	CCNNGG	1 cut(s)	647
BseGI	GGATG	3 cut(s)	14, 315, 779
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseMI	GCAATG	1 cut(s)	706
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	2 cut(s)	392, 775
BseXI	GCAGC	1 cut(s)	387
BsgI	GTGCAG	1 cut(s)	387
BshFI	GGCC	2 cut(s)	181, 213
BslFI	GGGAC	1 cut(s)	537
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmAI	GTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	537
BsmI	GAATGC	1 cut(s)	250
BsnI	GGCC	2 cut(s)	181, 213
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	4 cut(s)	46, 88, 715, 790
Bsp19I	CCATGG	1 cut(s)	647
BspACI	CCGC	1 cut(s)	36
BspANI	GGCC	2 cut(s)	181, 213
BspCNI	CTCAG	1 cut(s)	53
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	525
BspQI	GCTCTTC	1 cut(s)	94
BsrDI	GCAATG	1 cut(s)	706
BsrI	ACTGG	2 cut(s)	392, 775
BssECI	CCNNGG	1 cut(s)	647
BssMI	GATC	4 cut(s)	46, 88, 715, 790
BssT1I	CCWWGG	1 cut(s)	647
Bst2UI	CCWGG	3 cut(s)	290, 296, 414
Bst6I	CTCTTC	1 cut(s)	94
BstAPI	GCANNNNNTGC	1 cut(s)	806
BstBAI	YACGTR	1 cut(s)	161
BstDEI	CTNAG	1 cut(s)	40
BstDSI	CCRYGG	1 cut(s)	647
BstF5I	GGATG	3 cut(s)	14, 315, 779
BstHHI	GCGC	1 cut(s)	573
BstKTI	GATC	4 cut(s)	49, 91, 718, 793
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	4 cut(s)	46, 88, 715, 790
BstMWI	GCNNNNNNNGC	3 cut(s)	579, 620, 806
BstNI	CCWGG	3 cut(s)	290, 296, 414
BstNSI	RCATGY	1 cut(s)	76
BstPAI	GACNNNNGTC	1 cut(s)	233
BstSCI	CCNGG	3 cut(s)	288, 294, 412
BstV1I	GCAGC	1 cut(s)	387
BsuRI	GGCC	2 cut(s)	181, 213
BtgI	CCRYGG	1 cut(s)	647
BtgZI	GCGATG	1 cut(s)	597
BtsCI	GGATG	3 cut(s)	14, 315, 779
BtsIMutI	CAGTG	2 cut(s)	56, 399
CaiI	CAGNNNCTG	1 cut(s)	295
CciI	TCATGA	1 cut(s)	91
CfoI	GCGC	1 cut(s)	573
Cfr13I	GGNCC	3 cut(s)	292, 353, 524
CsiI	ACCWGGT	1 cut(s)	294
Csp6I	GTAC	4 cut(s)	154, 165, 496, 644
CviAII	CATG	5 cut(s)	73, 92, 251, 487, 648
CviQI	GTAC	4 cut(s)	154, 165, 496, 644
DdeI	CTNAG	1 cut(s)	40
DpnI	GATC	4 cut(s)	48, 90, 717, 792
DpnII	GATC	4 cut(s)	46, 88, 715, 790
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	647
Eco147I	AGGCCT	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	333
Eco32I	GATATC	1 cut(s)	442
Eco47I	GGWCC	3 cut(s)	292, 353, 524
EcoO109I	RGGNCCY	2 cut(s)	292, 524
EcoRII	CCWGG	3 cut(s)	288, 294, 412
EcoRV	GATATC	1 cut(s)	442
EcoT14I	CCWWGG	1 cut(s)	647
EcoT38I	GRGCYC	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	647
FaeI	CATG	5 cut(s)	76, 95, 254, 490, 651
FaqI	GGGAC	1 cut(s)	537
FatI	CATG	5 cut(s)	72, 91, 250, 486, 647
FauNDI	CATATG	1 cut(s)	358
FbaI	TGATCA	2 cut(s)	46, 715
Fnu4HI	GCNGC	2 cut(s)	37, 401
FokI	GGATG	2 cut(s)	302, 786
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	2 cut(s)	37, 401
FspBI	CTAG	1 cut(s)	741
GlaI	GCGC	1 cut(s)	572
GluI	GCNGC	2 cut(s)	37, 401
HaeIII	GGCC	2 cut(s)	181, 213
HhaI	GCGC	1 cut(s)	573
Hin1II	CATG	5 cut(s)	76, 95, 254, 490, 651
Hin6I	GCGC	1 cut(s)	571
HinP1I	GCGC	1 cut(s)	571
HinfI	GANTC	5 cut(s)	129, 303, 502, 626, 652
HphI	GGTGA	2 cut(s)	131, 310
Hpy166II	GTNNAC	3 cut(s)	484, 644, 756
Hpy188I	TCNGA	2 cut(s)	7, 348
Hpy188III	TCNNGA	3 cut(s)	92, 170, 282
Hpy8I	GTNNAC	3 cut(s)	484, 644, 756
HpyAV	CCTTC	3 cut(s)	581, 738, 797
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	8 cut(s)	56, 248, 368, 403, 460, 699, 786, 800
HpyF10VI	GCNNNNNNNGC	3 cut(s)	579, 620, 806
HpyF3I	CTNAG	1 cut(s)	40
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	5 cut(s)	76, 95, 254, 490, 651
HspAI	GCGC	1 cut(s)	571
Ksp22I	TGATCA	2 cut(s)	46, 715
Kzo9I	GATC	4 cut(s)	46, 88, 715, 790
LguI	GCTCTTC	1 cut(s)	94
Lsp1109I	GCAGC	1 cut(s)	387
LweI	GCATC	2 cut(s)	426, 447
MabI	ACCWGGT	1 cut(s)	294
MaeI	CTAG	1 cut(s)	741
MaeII	ACGT	1 cut(s)	160
MalI	GATC	4 cut(s)	48, 90, 717, 792
MboI	GATC	4 cut(s)	46, 88, 715, 790
MboII	GAAGA	5 cut(s)	111, 138, 335, 680, 760
MhlI	GDGCHC	1 cut(s)	333
MluCI	AATT	5 cut(s)	111, 376, 422, 719, 763
MnlI	CCTC	3 cut(s)	203, 267, 377
MseI	TTAA	6 cut(s)	114, 188, 216, 690, 723, 779
MslI	CAYNNNNRTG	1 cut(s)	77
MspR9I	CCNGG	3 cut(s)	290, 296, 414
Mva1269I	GAATGC	1 cut(s)	250
MvaI	CCWGG	3 cut(s)	290, 296, 414
MwoI	GCNNNNNNNGC	3 cut(s)	579, 620, 806
NcoI	CCATGG	1 cut(s)	647
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	4 cut(s)	46, 88, 715, 790
NlaIII	CATG	5 cut(s)	76, 95, 254, 490, 651
NlaIV	GGNNCC	1 cut(s)	525
NspI	RCATGY	1 cut(s)	76
PagI	TCATGA	1 cut(s)	91
PceI	AGGCCT	1 cut(s)	213
PciI	ACATGT	1 cut(s)	72
PciSI	GCTCTTC	1 cut(s)	94
PctI	GAATGC	1 cut(s)	250
PfeI	GAWTC	5 cut(s)	129, 303, 502, 626, 652
PflMI	CCANNNNNTGG	1 cut(s)	295
PkrI	GCNGC	2 cut(s)	38, 402
Ppu21I	YACGTR	1 cut(s)	161
PpuMI	RGGWCCY	2 cut(s)	292, 524
PscI	ACATGT	1 cut(s)	72
PshAI	GACNNNNGTC	1 cut(s)	233
PshBI	ATTAAT	2 cut(s)	114, 690
Psp5II	RGGWCCY	2 cut(s)	292, 524
Psp6I	CCWGG	3 cut(s)	288, 294, 412
PspGI	CCWGG	3 cut(s)	288, 294, 412
PspN4I	GGNNCC	1 cut(s)	525
PspPI	GGNCC	3 cut(s)	292, 353, 524
PspPPI	RGGWCCY	2 cut(s)	292, 524
PstNI	CAGNNNCTG	1 cut(s)	295
RsaI	GTAC	4 cut(s)	155, 166, 497, 645
RsaNI	GTAC	4 cut(s)	154, 165, 496, 644
RseI	CAYNNNNRTG	1 cut(s)	77
SapI	GCTCTTC	1 cut(s)	94
SaqAI	TTAA	6 cut(s)	114, 188, 216, 690, 723, 779
SatI	GCNGC	2 cut(s)	37, 401
Sau3AI	GATC	4 cut(s)	46, 88, 715, 790
Sau96I	GGNCC	3 cut(s)	292, 353, 524
ScaI	AGTACT	1 cut(s)	166
ScrFI	CCNGG	3 cut(s)	290, 296, 414
SduI	GDGCHC	1 cut(s)	333
SetI	ASST	8 cut(s)	68, 163, 259, 297, 388, 529, 625, 808
SexAI	ACCWGGT	1 cut(s)	294
SfaNI	GCATC	2 cut(s)	426, 447
SinI	GGWCC	3 cut(s)	292, 353, 524
SmiMI	CAYNNNNRTG	1 cut(s)	77
Sse9I	AATT	5 cut(s)	111, 376, 422, 719, 763
SseBI	AGGCCT	1 cut(s)	213
SsiI	CCGC	1 cut(s)	36
SspMI	CTAG	1 cut(s)	741
StuI	AGGCCT	1 cut(s)	213
StyD4I	CCNGG	3 cut(s)	288, 294, 412
StyI	CCWWGG	1 cut(s)	647
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	1 cut(s)	87
TasI	AATT	5 cut(s)	111, 376, 422, 719, 763
TatI	WGTACW	1 cut(s)	164
TauI	GCSGC	1 cut(s)	39
TfiI	GAWTC	5 cut(s)	129, 303, 502, 626, 652
Tru1I	TTAA	6 cut(s)	114, 188, 216, 690, 723, 779
Tru9I	TTAA	6 cut(s)	114, 188, 216, 690, 723, 779
TscAI	CASTG	2 cut(s)	56, 399
TseI	GCWGC	1 cut(s)	400
TspDTI	ATGAA	5 cut(s)	267, 295, 506, 600, 720
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	2 cut(s)	56, 399
Van91I	CCANNNNNTGG	1 cut(s)	295
VpaK11BI	GGWCC	3 cut(s)	292, 353, 524
VspI	ATTAAT	2 cut(s)	114, 690
XceI	RCATGY	1 cut(s)	76
XspI	CTAG	1 cut(s)	741
ZrmI	AGTACT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.