Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001950

Physical Location & Seq

Genomic Coordinates Reverse (-)

8428157 .. 8430749

Gene Structure 2593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g12320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGAGCTGTGGTGGTGGCAGCTGCGACGTGCTTTTGTTGTGGCAGCGGTGGTGGTAGTTATAACACAAAAAGGTTGTGTTCGCGGAGAAGATGTCACGTACGACGGCAGATCGCTCATCATTGATGGGGAAAGAAGACTTCTGTTTTCAGGTTCTATTCACTATCCTCGGAGCACACCTGAGATGTGGGGATCTTTGATTGGGAAAGCCAAGGAAGGAGGACTTGATGTGATTCAAACCTATGTATTTTGGAACCGTCACGAGCCCCAGCCGGGCCAGTACGATTTCAGTGGAAGAAATGATCTAGTAAAATTTATAAAAGAAATCCAGGCACAAGGGCTTTATGCTTGCCTCAGGATCGGACCCTTCATTGAGAGTGAATGGACATATGGGGGACTTCCGTTTTGGCTGCATGACGTCCCAGGCATAGTTTACCGCTCAGATAACGAACCATTCAAGTTTTATATGCAAAACTTCACTACAAAAATAGTGAACTTGATGAAGTCAGAGGGTTTATATGCATCACAAGGAGGCCCAATCATACTGTCGCAGGTATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009664 GO:0009791 GO:0009827 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0015925 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0042545 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048046 GO:0048316 GO:0048354 GO:0048359 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BetaGal_dom4_5 Gal_Lectin Glyco_hydro_35

Protein Analysis

187

Amino Acids

21.32

Weight (kDa)

6.83

Isoelectric Point (pI)

55.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	38 - 185	5.6e-65	Glycosyl hydrolases family 35
Glyco_hydro_42	PF02449	60 - 138	1e-06	Beta-galactosidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13750
fragaria_vesca	FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260
malus_domestica	MD03G1276100.v1.1 MD05G1210900.v1.1 MD09G1193900.v1.1 MD11G1104200.v1.1 MD11G1105200.v1.1 MD15G1317000.v1.1 MD16G1228200.v1.1
prunus_persica	Prupe.3G050200_v2.0.a1
pyrus_communis	pycom09g11040 pycom111g03560 pycom15g12320
rosa_chinensis	RchiOBHm_Chr0c25g0500881 RchiOBHm_Chr1g0331081 RchiOBHm_Chr2g0142961 RchiOBHm_Chr6g0257481 RchiOBHm_Chr6g0266311
rosa_laevigata	RLG00000020004
rosa_multiflora	Rmu_sc0006428.1_g000002 Rmu_sc0008528.1_g000001 Rmu_sc0028483.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030970 Rroxscaffold_2G00102180 Rroxscaffold_7G00183160 Rroxscaffold_7G00216290
rosa_rugosa	Rorug02G0377400
rosa_samantha	Rh2AG100700 Rh2AG430500 Rh2BG138700 Rh2BG439500 Rh2CG416200 Rh2DG449500 Rh4CG196100 Rh5DG216000 Rh6AG145200 Rh6AG372600 Rh6AG422200 Rh6DG373500
rosa_wichuraiana	Rw2G035160 Rw5G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	62, 317
AatII	GACGTC	1 cut(s)	420
Acc36I	ACCTGC	1 cut(s)	541
AccBSI	CCGCTC	1 cut(s)	438
AccII	CGCG	1 cut(s)	84
AciI	CCGC	3 cut(s)	47, 84, 436
AclWI	GGATC	2 cut(s)	199, 365
AcsI	RAATTY	1 cut(s)	311
AcyI	GRCGYC	1 cut(s)	417
AfaI	GTAC	2 cut(s)	101, 281
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	2 cut(s)	236, 457
AjiI	CACGTC	1 cut(s)	29
AjnI	CCWGG	2 cut(s)	327, 421
AluBI	AGCT	2 cut(s)	7, 22
AluI	AGCT	2 cut(s)	7, 22
Alw21I	GWGCWC	1 cut(s)	176
AlwI	GGATC	2 cut(s)	199, 365
AoxI	GGCC	2 cut(s)	274, 532
ApeKI	GCWGC	4 cut(s)	19, 22, 44, 409
ApoI	RAATTY	1 cut(s)	311
ArsI	GACNNNNNNTTYG	2 cut(s)	387, 419
AspS9I	GGNCC	3 cut(s)	274, 362, 533
AsuC2I	CCSGG	1 cut(s)	273
AvaII	GGWCC	1 cut(s)	362
AxyI	CCTNAGG	1 cut(s)	353
BanII	GRGCYC	1 cut(s)	267
BauI	CACGAG	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	142
Bbv12I	GWGCWC	1 cut(s)	176
BbvI	GCAGC	4 cut(s)	9, 31, 56, 396
BccI	CCATC	1 cut(s)	119
BceAI	ACGGC	1 cut(s)	121
BciT130I	CCWGG	2 cut(s)	329, 423
BcnI	CCSGG	1 cut(s)	273
BfaI	CTAG	1 cut(s)	305
BfuAI	ACCTGC	1 cut(s)	541
BisI	GCNGC	4 cut(s)	20, 23, 45, 410
BlsI	GCNGC	4 cut(s)	21, 24, 46, 411
Bme1390I	CCNGG	3 cut(s)	273, 329, 423
Bme18I	GGWCC	1 cut(s)	362
BmgBI	CACGTC	1 cut(s)	29
BmgT120I	GGNCC	3 cut(s)	274, 362, 533
BmiI	GGNNCC	2 cut(s)	254, 364
BmrFI	CCNGG	3 cut(s)	273, 329, 423
BmsI	GCATC	1 cut(s)	530
BpiI	GAAGAC	1 cut(s)	142
BpuMI	CCSGG	1 cut(s)	273
BsaAI	YACGTR	1 cut(s)	99
BsaHI	GRCGYC	1 cut(s)	417
BsaJI	CCNNGG	3 cut(s)	167, 210, 421
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 78, 108
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	277
Bse21I	CCTNAGG	1 cut(s)	353
BseBI	CCWGG	2 cut(s)	329, 423
BseDI	CCNNGG	3 cut(s)	167, 210, 421
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	3 cut(s)	171, 367, 453
BseNI	ACTGG	1 cut(s)	277
BseXI	GCAGC	4 cut(s)	9, 31, 56, 396
BseYI	CCCAGC	1 cut(s)	267
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	2 cut(s)	276, 534
BsiHKAI	GWGCWC	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	272
BsiWI	CGTACG	1 cut(s)	99
BslFI	GGGAC	2 cut(s)	404, 408
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmFI	GGGAC	2 cut(s)	404, 408
BsnI	GGCC	2 cut(s)	276, 534
Bsp1286I	GDGCHC	2 cut(s)	176, 267
Bsp143I	GATC	4 cut(s)	110, 191, 301, 357
BspACI	CCGC	3 cut(s)	47, 84, 436
BspANI	GGCC	2 cut(s)	276, 534
BspCNI	CTCAG	3 cut(s)	172, 366, 452
BspFNI	CGCG	1 cut(s)	84
BspLI	GGNNCC	2 cut(s)	254, 364
BspMI	ACCTGC	1 cut(s)	541
BspPI	GGATC	2 cut(s)	199, 365
BsrBI	CCGCTC	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	277
BssECI	CCNNGG	3 cut(s)	167, 210, 421
BssMI	GATC	4 cut(s)	110, 191, 301, 357
BssNI	GRCGYC	1 cut(s)	417
BssSI	CACGAG	1 cut(s)	260
BssT1I	CCWWGG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	260
Bst2UI	CCWGG	2 cut(s)	329, 423
Bst4CI	ACNGT	2 cut(s)	257, 546
BstACI	GRCGYC	1 cut(s)	417
BstBAI	YACGTR	1 cut(s)	99
BstC8I	GCNNGC	1 cut(s)	349
BstDEI	CTNAG	3 cut(s)	180, 353, 439
BstFNI	CGCG	1 cut(s)	84
BstKTI	GATC	4 cut(s)	113, 194, 304, 360
BstMBI	GATC	4 cut(s)	110, 191, 301, 357
BstNI	CCWGG	2 cut(s)	329, 423
BstSCI	CCNGG	3 cut(s)	271, 327, 421
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	4 cut(s)	9, 31, 56, 396
BstV2I	GAAGAC	1 cut(s)	142
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
Bsu36I	CCTNAGG	1 cut(s)	353
BsuRI	GGCC	2 cut(s)	276, 534
BtrI	CACGTC	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	295
BveI	ACCTGC	1 cut(s)	541
Cac8I	GCNNGC	1 cut(s)	349
Cfr13I	GGNCC	3 cut(s)	274, 362, 533
Csp6I	GTAC	2 cut(s)	100, 280
CviAII	CATG	1 cut(s)	413
CviJI	RGCY	9 cut(s)	7, 22, 209, 265, 271, 276, 340, 409, 534
CviKI_1	RGCY	9 cut(s)	7, 22, 209, 265, 271, 276, 340, 409, 534
CviQI	GTAC	2 cut(s)	100, 280
DdeI	CTNAG	3 cut(s)	180, 353, 439
DpnI	GATC	4 cut(s)	112, 193, 303, 359
DpnII	GATC	4 cut(s)	110, 191, 301, 357
Eco130I	CCWWGG	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	362
Eco81I	CCTNAGG	1 cut(s)	353
EcoRII	CCWGG	2 cut(s)	327, 421
EcoT14I	CCWWGG	1 cut(s)	210
EcoT22I	ATGCAT	1 cut(s)	523
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	1 cut(s)	416
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FaqI	GGGAC	2 cut(s)	404, 408
FatI	CATG	1 cut(s)	412
FauNDI	CATATG	1 cut(s)	388
Fnu4HI	GCNGC	4 cut(s)	20, 23, 45, 410
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	4 cut(s)	20, 23, 45, 410
FspBI	CTAG	1 cut(s)	305
GluI	GCNGC	4 cut(s)	20, 23, 45, 410
GsaI	CCCAGC	1 cut(s)	271
HaeIII	GGCC	2 cut(s)	276, 534
HapII	CCGG	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	417
Hin1II	CATG	1 cut(s)	416
HinfI	GANTC	1 cut(s)	232
HpaII	CCGG	1 cut(s)	272
Hpy166II	GTNNAC	2 cut(s)	433, 493
Hpy188I	TCNGA	4 cut(s)	171, 362, 442, 508
Hpy188III	TCNNGA	3 cut(s)	260, 355, 558
Hpy8I	GTNNAC	2 cut(s)	433, 493
Hpy99I	CGWCG	2 cut(s)	30, 107
HpyAV	CCTTC	2 cut(s)	209, 376
HpyCH4III	ACNGT	2 cut(s)	257, 546
HpyCH4IV	ACGT	3 cut(s)	28, 98, 417
HpyCH4V	TGCA	3 cut(s)	412, 469, 521
HpyF3I	CTNAG	3 cut(s)	180, 353, 439
HpySE526I	ACGT	3 cut(s)	28, 98, 417
Hsp92I	GRCGYC	1 cut(s)	417
Hsp92II	CATG	1 cut(s)	416
Kzo9I	GATC	4 cut(s)	110, 191, 301, 357
LmnI	GCTCC	2 cut(s)	4, 171
Lsp1109I	GCAGC	4 cut(s)	9, 31, 56, 396
LweI	GCATC	1 cut(s)	530
MaeI	CTAG	1 cut(s)	305
MaeII	ACGT	3 cut(s)	28, 98, 417
MaeIII	GTNAC	2 cut(s)	94, 257
MalI	GATC	4 cut(s)	112, 193, 303, 359
MbiI	CCGCTC	1 cut(s)	438
MboI	GATC	4 cut(s)	110, 191, 301, 357
MboII	GAAGA	3 cut(s)	101, 147, 306
MflI	RGATCY	1 cut(s)	191
MhlI	GDGCHC	2 cut(s)	176, 267
MluCI	AATT	1 cut(s)	311
MnlI	CCTC	5 cut(s)	177, 212, 362, 502, 524
Mph1103I	ATGCAT	1 cut(s)	523
MspA1I	CMGCKG	2 cut(s)	22, 47
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	3 cut(s)	273, 329, 423
MvaI	CCWGG	2 cut(s)	329, 423
MvnI	CGCG	1 cut(s)	84
NciI	CCSGG	1 cut(s)	273
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	4 cut(s)	110, 191, 301, 357
NlaIII	CATG	1 cut(s)	416
NlaIV	GGNNCC	2 cut(s)	254, 364
NmuCI	GTSAC	2 cut(s)	94, 257
NsiI	ATGCAT	1 cut(s)	523
PcsI	WCGNNNNNNNCGW	1 cut(s)	554
PfeI	GAWTC	1 cut(s)	232
Pfl23II	CGTACG	1 cut(s)	99
PkrI	GCNGC	4 cut(s)	21, 24, 46, 411
Ppu21I	YACGTR	1 cut(s)	99
PsiI	TTATAA	2 cut(s)	62, 317
Psp6I	CCWGG	2 cut(s)	327, 421
PspFI	CCCAGC	1 cut(s)	267
PspGI	CCWGG	2 cut(s)	327, 421
PspLI	CGTACG	1 cut(s)	99
PspN4I	GGNNCC	2 cut(s)	254, 364
PspPI	GGNCC	3 cut(s)	274, 362, 533
PsuI	RGATCY	1 cut(s)	191
PvuII	CAGCTG	1 cut(s)	22
RsaI	GTAC	2 cut(s)	101, 281
RsaNI	GTAC	2 cut(s)	100, 280
SatI	GCNGC	4 cut(s)	20, 23, 45, 410
Sau3AI	GATC	4 cut(s)	110, 191, 301, 357
Sau96I	GGNCC	3 cut(s)	274, 362, 533
ScrFI	CCNGG	3 cut(s)	273, 329, 423
SduI	GDGCHC	2 cut(s)	176, 267
SfaNI	GCATC	1 cut(s)	530
SinI	GGWCC	1 cut(s)	362
Sse9I	AATT	1 cut(s)	311
SsiI	CCGC	3 cut(s)	47, 84, 436
SspMI	CTAG	1 cut(s)	305
StyD4I	CCNGG	3 cut(s)	271, 327, 421
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	2 cut(s)	257, 546
TaiI	ACGT	3 cut(s)	31, 101, 420
TasI	AATT	1 cut(s)	311
TfiI	GAWTC	1 cut(s)	232
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	2 cut(s)	94, 257
TseI	GCWGC	4 cut(s)	19, 22, 44, 409
Tsp45I	GTSAC	2 cut(s)	94, 257
TspDTI	ATGAA	2 cut(s)	358, 515
TspGWI	ACGGA	1 cut(s)	390
TspRI	CASTG	1 cut(s)	295
VpaK11BI	GGWCC	1 cut(s)	362
XapI	RAATTY	1 cut(s)	311
XspI	CTAG	1 cut(s)	305
ZraI	GACGTC	1 cut(s)	418
Zsp2I	ATGCAT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.