Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001950

Physical Location & Seq

Genomic Coordinates Reverse (-)

67002056 .. 67002584

Gene Structure 529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00216290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGTGGCCTGATATTCTGAAGAAGGCTAAACAAGGAGGTTTGAATGTGATTCAAACTTATGTGTTTTGGAACATTCATGAACCTGTGCAAGGCAAGTGGGAGTTCGAGGGAAACTATGATTTGGTGAAGTTTATTAGGTTGATCCAGGAGAATGGAATGTATGCTACCCTCAGGGTTGGACCATTCATCCAAGCAGAATGGAACCATGGAGGTCTTCCATATTGGCTGAGAGAGGTCCCAGGAATCACTTTCCGATCAGATAATGAACCATACAAGGTACTAATTGATTCAATTTCAAATATTATTAGTACAATCATGTGCACAATTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BetaGal_dom4_5 Gal_Lectin Glyco_hydro_35

Protein Analysis

110

Amino Acids

12.8

Weight (kDa)

6.07

Isoelectric Point (pI)

50.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	1 - 104	1.4e-44	Glycosyl hydrolases family 35
Glyco_hydro_42	PF02449	2 - 77	3e-06	Beta-galactosidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13750
fragaria_vesca	FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260
malus_domestica	MD03G1276100.v1.1 MD05G1210900.v1.1 MD09G1193900.v1.1 MD11G1104200.v1.1 MD11G1105200.v1.1 MD15G1317000.v1.1 MD16G1228200.v1.1
prunus_persica	Prupe.3G050200_v2.0.a1
pyrus_communis	pycom09g11040 pycom111g03560 pycom15g12320
rosa_chinensis	RchiOBHm_Chr0c25g0500881 RchiOBHm_Chr1g0331081 RchiOBHm_Chr2g0142961 RchiOBHm_Chr6g0257481 RchiOBHm_Chr6g0266311
rosa_laevigata	RLG00000020004
rosa_multiflora	Rmu_sc0006428.1_g000002 Rmu_sc0008528.1_g000001 Rmu_sc0028483.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030970 Rroxscaffold_2G00102180 Rroxscaffold_7G00183160 Rroxscaffold_7G00216290
rosa_rugosa	Rorug02G0377400
rosa_samantha	Rh2AG100700 Rh2AG430500 Rh2BG138700 Rh2BG439500 Rh2CG416200 Rh2DG449500 Rh4CG196100 Rh5DG216000 Rh6AG145200 Rh6AG372600 Rh6AG422200 Rh6DG373500
rosa_wichuraiana	Rw2G035160 Rw5G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	136
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	2 cut(s)	279, 310
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgsI	TTSAA	4 cut(s)	43, 53, 291, 297
AjnI	CCWGG	2 cut(s)	144, 238
Alw21I	GWGCWC	1 cut(s)	323
Alw44I	GTGCAC	1 cut(s)	319
AlwI	GGATC	1 cut(s)	136
AoxI	GGCC	1 cut(s)	5
ApaLI	GTGCAC	1 cut(s)	319
AspS9I	GGNCC	2 cut(s)	179, 235
AsuHPI	GGTGA	1 cut(s)	136
AvaII	GGWCC	2 cut(s)	179, 235
AxyI	CCTNAGG	1 cut(s)	170
BaeGI	GKGCMC	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	323
BciT130I	CCWGG	2 cut(s)	146, 240
Bme1390I	CCNGG	2 cut(s)	146, 240
Bme18I	GGWCC	2 cut(s)	179, 235
BmgT120I	GGNCC	2 cut(s)	179, 235
BmiI	GGNNCC	2 cut(s)	203, 237
BmrFI	CCNGG	2 cut(s)	146, 240
BpiI	GAAGAC	1 cut(s)	206
BsaJI	CCNNGG	2 cut(s)	205, 238
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse21I	CCTNAGG	1 cut(s)	170
BseBI	CCWGG	2 cut(s)	146, 240
BseDI	CCNNGG	2 cut(s)	205, 238
BseGI	GGATG	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMII	CTCAG	2 cut(s)	184, 218
BseSI	GKGCMC	1 cut(s)	323
BshFI	GGCC	1 cut(s)	7
BsiHKAI	GWGCWC	1 cut(s)	323
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	1 cut(s)	7
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp143I	GATC	2 cut(s)	141, 254
Bsp19I	CCATGG	1 cut(s)	205
BspANI	GGCC	1 cut(s)	7
BspCNI	CTCAG	2 cut(s)	183, 219
BspHI	TCATGA	1 cut(s)	76
BspLI	GGNNCC	2 cut(s)	203, 237
BspPI	GGATC	1 cut(s)	136
BssECI	CCNNGG	2 cut(s)	205, 238
BssMI	GATC	2 cut(s)	141, 254
BssT1I	CCWWGG	1 cut(s)	205
Bst2UI	CCWGG	2 cut(s)	146, 240
BstDEI	CTNAG	2 cut(s)	170, 227
BstDSI	CCRYGG	1 cut(s)	205
BstENI	CCTNNNNNAGG	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	186
BstKTI	GATC	2 cut(s)	144, 257
BstMBI	GATC	2 cut(s)	141, 254
BstNI	CCWGG	2 cut(s)	146, 240
BstSCI	CCNGG	2 cut(s)	144, 238
BstSLI	GKGCMC	1 cut(s)	323
BstV2I	GAAGAC	1 cut(s)	206
BstXI	CCANNNNNNTGG	1 cut(s)	152
Bsu36I	CCTNAGG	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	7
BtgI	CCRYGG	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	186
CciI	TCATGA	1 cut(s)	76
Cfr13I	GGNCC	2 cut(s)	179, 235
Csp6I	GTAC	2 cut(s)	278, 309
CspCI	CAANNNNNGTGG	2 cut(s)	77, 112
CviAII	CATG	4 cut(s)	77, 206, 316, 330
CviJI	RGCY	3 cut(s)	7, 26, 226
CviKI_1	RGCY	3 cut(s)	7, 26, 226
CviQI	GTAC	2 cut(s)	278, 309
DdeI	CTNAG	2 cut(s)	170, 227
DpnI	GATC	2 cut(s)	143, 256
DpnII	GATC	2 cut(s)	141, 254
Eco130I	CCWWGG	1 cut(s)	205
Eco47I	GGWCC	2 cut(s)	179, 235
Eco57I	CTGAAG	1 cut(s)	38
Eco81I	CCTNAGG	1 cut(s)	170
EcoNI	CCTNNNNNAGG	1 cut(s)	87
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRII	CCWGG	2 cut(s)	144, 238
EcoT14I	CCWWGG	1 cut(s)	205
ErhI	CCWWGG	1 cut(s)	205
FaeI	CATG	4 cut(s)	80, 209, 319, 333
FaiI	YATR	9 cut(s)	60, 78, 117, 162, 207, 220, 271, 317, 331
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	4 cut(s)	76, 205, 315, 329
FokI	GGATG	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	7
Hin1II	CATG	4 cut(s)	80, 209, 319, 333
HinfI	GANTC	3 cut(s)	49, 243, 287
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	1 cut(s)	321
Hpy188I	TCNGA	3 cut(s)	18, 254, 259
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	1 cut(s)	321
HpyAV	CCTTC	1 cut(s)	16
HpyCH4V	TGCA	2 cut(s)	88, 321
HpyF3I	CTNAG	2 cut(s)	170, 227
Hsp92II	CATG	4 cut(s)	80, 209, 319, 333
Kzo9I	GATC	2 cut(s)	141, 254
LpnPI	CCDG	7 cut(s)	21, 96, 131, 157, 158, 225, 252
MalI	GATC	2 cut(s)	143, 256
MboI	GATC	2 cut(s)	141, 254
MboII	GAAGA	2 cut(s)	31, 206
MhlI	GDGCHC	1 cut(s)	323
MluCI	AATT	3 cut(s)	282, 291, 324
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	5 cut(s)	29, 100, 179, 203, 226
MspR9I	CCNGG	2 cut(s)	146, 240
MvaI	CCWGG	2 cut(s)	146, 240
NcoI	CCATGG	1 cut(s)	205
NdeII	GATC	2 cut(s)	141, 254
NlaIII	CATG	4 cut(s)	80, 209, 319, 333
NlaIV	GGNNCC	2 cut(s)	203, 237
PagI	TCATGA	1 cut(s)	76
PfeI	GAWTC	3 cut(s)	49, 243, 287
PfoI	TCCNGGA	1 cut(s)	144
PpuMI	RGGWCCY	1 cut(s)	235
Psp5II	RGGWCCY	1 cut(s)	235
Psp6I	CCWGG	2 cut(s)	144, 238
PspGI	CCWGG	2 cut(s)	144, 238
PspN4I	GGNNCC	2 cut(s)	203, 237
PspPI	GGNCC	2 cut(s)	179, 235
PspPPI	RGGWCCY	1 cut(s)	235
RsaI	GTAC	2 cut(s)	279, 310
RsaNI	GTAC	2 cut(s)	278, 309
Sau3AI	GATC	2 cut(s)	141, 254
Sau96I	GGNCC	2 cut(s)	179, 235
ScrFI	CCNGG	2 cut(s)	146, 240
SduI	GDGCHC	1 cut(s)	323
SetI	ASST	6 cut(s)	40, 85, 140, 214, 237, 279
SinI	GGWCC	2 cut(s)	179, 235
Sse9I	AATT	3 cut(s)	282, 291, 324
SspI	AATATT	1 cut(s)	301
StyD4I	CCNGG	2 cut(s)	144, 238
StyI	CCWWGG	1 cut(s)	205
TaqI	TCGA	1 cut(s)	105
TasI	AATT	3 cut(s)	282, 291, 324
TatI	WGTACW	1 cut(s)	308
TfiI	GAWTC	3 cut(s)	49, 243, 287
TspDTI	ATGAA	4 cut(s)	65, 93, 175, 279
VneI	GTGCAC	1 cut(s)	319
VpaK11BI	GGWCC	2 cut(s)	179, 235
XagI	CCTNNNNNAGG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.