Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001950

Physical Location & Seq

Genomic Coordinates Forward (+)

63911284 .. 63913761

Gene Structure 2478 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG430500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGGTTTGAGGCTTGTAATGTGGAATGTGGTAGCCCTGCTGGTGCTCTTGTGTTCTTGTTTCTCTTCTGTTAAAGCCTCTGTTTCTTATGATTCCAAGTCTATTGTCATCAATGGCCAGAGGAGGATCCTCATTTCTGGATCTATTCACTACCCAAGAAGCACCCCTGAGATGTGGCCAGATCTTATTCAGAAAGCCAAGAAAGGAGGCTTGGATGTGATTCAGACTTATGTTTTCTGGAATGGGCATGAACCTTCACCTGGCAAATACTATTTTGGGGACAACTATGATCTGGTCAAATTTATCAAGCTGGTACAGCAGGCAGGCCTTTATGTTCATCTCAGGATTGGTCCTTATGTTTGTGCAGAGTGGAACTTTGGGGGGTTTCCTGTTTGGCTGAAGTACATTCCTGGTATCCAATTCAGAACAGATAATGGACCTTTCAAGGATCAAATGCAAAGATTCACTACAAAGATTGTAAACATGATGAAAGCAGAAAGGTTGTTCGAGTCTCACGGTGGTCCAATCATTCTATCCCAGATTGAAAATGAGTATGGACCCATGGAATACGAAATTGGTGCACCAGGTAAAGCCTACACTGACTGGGCAGCTCAGATGGCTGTGGGACTAAACACTGGTGTCCCCTGGGTCATGTGCAAACAAGATGATGCCCCTGATCCTGTTATTAACGCTTGCAATGGCTTCTATTGTGACTACTTCTCTCCAAACAAGGCTTATAAACCAAAGATGTGGACTGAAGCCTGGACTGGATGGTTTACTGAGTTTGGAGGTGCAGTTCCTTACCGACCAGCTGAGGATTTGGCATTTTCAGTTGCGAAGTTTATACAAAAGGGTGGATCATTCATTAACTATTATATGTCTATAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005911 GO:0009505 GO:0009506 GO:0015925 GO:0016787 GO:0016798 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

296

Amino Acids

33.56

Weight (kDa)

8.39

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	34 - 294	1.4e-98	Glycosyl hydrolases family 35
Glyco_hydro_42	PF02449	56 - 187	6.2e-06	Beta-galactosidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13750
fragaria_vesca	FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260
malus_domestica	MD03G1276100.v1.1 MD05G1210900.v1.1 MD09G1193900.v1.1 MD11G1104200.v1.1 MD11G1105200.v1.1 MD15G1317000.v1.1 MD16G1228200.v1.1
prunus_persica	Prupe.3G050200_v2.0.a1
pyrus_communis	pycom09g11040 pycom111g03560 pycom15g12320
rosa_chinensis	RchiOBHm_Chr0c25g0500881 RchiOBHm_Chr1g0331081 RchiOBHm_Chr2g0142961 RchiOBHm_Chr6g0257481 RchiOBHm_Chr6g0266311
rosa_laevigata	RLG00000020004
rosa_multiflora	Rmu_sc0006428.1_g000002 Rmu_sc0008528.1_g000001 Rmu_sc0028483.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030970 Rroxscaffold_2G00102180 Rroxscaffold_7G00183160 Rroxscaffold_7G00216290
rosa_rugosa	Rorug02G0377400
rosa_samantha	Rh2AG100700 Rh2AG430500 Rh2BG138700 Rh2BG439500 Rh2CG416200 Rh2DG449500 Rh4CG196100 Rh5DG216000 Rh6AG145200 Rh6AG372600 Rh6AG422200 Rh6DG373500
rosa_wichuraiana	Rw2G035160 Rw5G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	738
AclWI	GGATC	6 cut(s)	121, 134, 148, 456, 671, 865
AcoI	YGGCCR	2 cut(s)	115, 176
AcsI	RAATTY	1 cut(s)	299
AcuI	CTGAAG	2 cut(s)	419, 777
AfaI	GTAC	2 cut(s)	315, 404
AfiI	CCNNNNNNNGG	1 cut(s)	260
AgsI	TTSAA	2 cut(s)	445, 545
AjnI	CCWGG	5 cut(s)	259, 409, 583, 644, 761
AjuI	GAANNNNNNNTTGG	4 cut(s)	194, 226, 558, 590
AloI	GAACNNNNNNTCC	2 cut(s)	780, 812
AluBI	AGCT	3 cut(s)	310, 611, 812
AluI	AGCT	3 cut(s)	310, 611, 812
Alw21I	GWGCWC	2 cut(s)	48, 583
Alw26I	GTCTC	1 cut(s)	516
Alw44I	GTGCAC	1 cut(s)	579
AlwI	GGATC	6 cut(s)	121, 134, 148, 456, 671, 865
AoxI	GGCC	3 cut(s)	115, 176, 325
ApaLI	GTGCAC	1 cut(s)	579
ApeKI	GCWGC	1 cut(s)	608
ApoI	RAATTY	1 cut(s)	299
AspS9I	GGNCC	4 cut(s)	350, 437, 521, 557
AsuHPI	GGTGA	1 cut(s)	249
AvaII	GGWCC	4 cut(s)	350, 437, 521, 557
BaeGI	GKGCMC	1 cut(s)	583
BalI	TGGCCA	2 cut(s)	117, 178
BamHI	GGATCC	1 cut(s)	126
Bbv12I	GWGCWC	2 cut(s)	48, 583
BbvCI	CCTCAGC	1 cut(s)	813
BbvI	GCAGC	1 cut(s)	620
BccI	CCATC	2 cut(s)	610, 765
BcgI	CGANNNNNNTGC	2 cut(s)	560, 594
BciT130I	CCWGG	5 cut(s)	261, 411, 585, 646, 763
BciVI	GTATCC	1 cut(s)	425
BcoDI	GTCTC	1 cut(s)	516
BfuI	GTATCC	1 cut(s)	425
BglII	AGATCT	1 cut(s)	181
BisI	GCNGC	1 cut(s)	609
BlsI	GCNGC	1 cut(s)	610
Bme1390I	CCNGG	5 cut(s)	261, 411, 585, 646, 763
Bme18I	GGWCC	4 cut(s)	350, 437, 521, 557
BmgT120I	GGNCC	4 cut(s)	350, 437, 521, 557
BmiI	GGNNCC	2 cut(s)	128, 559
BmrFI	CCNGG	5 cut(s)	261, 411, 585, 646, 763
BmrI	ACTGGG	1 cut(s)	613
BmsI	GCATC	1 cut(s)	658
BmuI	ACTGGG	1 cut(s)	613
Bpu10I	CCTNAGC	1 cut(s)	813
BsaJI	CCNNGG	3 cut(s)	561, 644, 645
BsaXI	ACNNNNNCTCC	2 cut(s)	780, 810
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse1I	ACTGG	3 cut(s)	608, 640, 772
Bse3DI	GCAATG	1 cut(s)	703
BseBI	CCWGG	5 cut(s)	261, 411, 585, 646, 763
BseDI	CCNNGG	3 cut(s)	561, 644, 645
BseGI	GGATG	2 cut(s)	220, 776
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMI	GCAATG	1 cut(s)	703
BseMII	CTCAG	5 cut(s)	159, 355, 626, 771, 804
BseNI	ACTGG	3 cut(s)	608, 640, 772
BseRI	GAGGAG	1 cut(s)	136
BseSI	GKGCMC	1 cut(s)	583
BseXI	GCAGC	1 cut(s)	620
BsgI	GTGCAG	2 cut(s)	384, 813
BshFI	GGCC	3 cut(s)	117, 178, 327
BsiHKAI	GWGCWC	2 cut(s)	48, 583
BslFI	GGGAC	3 cut(s)	293, 626, 639
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmAI	GTCTC	1 cut(s)	516
BsmFI	GGGAC	3 cut(s)	293, 626, 639
BsnI	GGCC	3 cut(s)	117, 178, 327
Bsp1286I	GDGCHC	2 cut(s)	48, 583
Bsp143I	GATC	7 cut(s)	126, 140, 181, 289, 448, 676, 857
Bsp19I	CCATGG	1 cut(s)	561
BspANI	GGCC	3 cut(s)	117, 178, 327
BspCNI	CTCAG	5 cut(s)	160, 354, 625, 772, 805
BspLI	GGNNCC	2 cut(s)	128, 559
BspPI	GGATC	6 cut(s)	121, 134, 148, 456, 671, 865
BsrDI	GCAATG	1 cut(s)	703
BsrI	ACTGG	3 cut(s)	608, 640, 772
BssECI	CCNNGG	3 cut(s)	561, 644, 645
BssMI	GATC	7 cut(s)	126, 140, 181, 289, 448, 676, 857
BssT1I	CCWWGG	1 cut(s)	561
Bst2UI	CCWGG	5 cut(s)	261, 411, 585, 646, 763
Bst4CI	ACNGT	1 cut(s)	518
Bst6I	CTCTTC	1 cut(s)	70
BstC8I	GCNNGC	3 cut(s)	321, 325, 694
BstDEI	CTNAG	5 cut(s)	168, 341, 612, 780, 813
BstDSI	CCRYGG	1 cut(s)	561
BstF5I	GGATG	2 cut(s)	220, 776
BstKTI	GATC	7 cut(s)	129, 143, 184, 292, 451, 679, 860
BstMAI	GTCTC	1 cut(s)	516
BstMBI	GATC	7 cut(s)	126, 140, 181, 289, 448, 676, 857
BstMWI	GCNNNNNNNGC	2 cut(s)	316, 617
BstNI	CCWGG	5 cut(s)	261, 411, 585, 646, 763
BstSCI	CCNGG	5 cut(s)	259, 409, 583, 644, 761
BstSLI	GKGCMC	1 cut(s)	583
BstV1I	GCAGC	1 cut(s)	620
BstX2I	RGATCY	3 cut(s)	126, 140, 181
BstXI	CCANNNNNNTGG	1 cut(s)	750
BstYI	RGATCY	3 cut(s)	126, 140, 181
BsuI	GTATCC	1 cut(s)	425
BsuRI	GGCC	3 cut(s)	117, 178, 327
BtgI	CCRYGG	1 cut(s)	561
BtsCI	GGATG	2 cut(s)	220, 776
BtsIMutI	CAGTG	2 cut(s)	597, 633
Cac8I	GCNNGC	3 cut(s)	321, 325, 694
Cfr13I	GGNCC	4 cut(s)	350, 437, 521, 557
CsiI	ACCWGGT	1 cut(s)	583
Csp6I	GTAC	2 cut(s)	314, 403
CviAII	CATG	4 cut(s)	248, 484, 562, 652
CviQI	GTAC	2 cut(s)	314, 403
DdeI	CTNAG	5 cut(s)	168, 341, 612, 780, 813
DpnI	GATC	7 cut(s)	128, 142, 183, 291, 450, 678, 859
DpnII	GATC	7 cut(s)	126, 140, 181, 289, 448, 676, 857
EaeI	YGGCCR	2 cut(s)	115, 176
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	561
Eco147I	AGGCCT	1 cut(s)	327
Eco47I	GGWCC	4 cut(s)	350, 437, 521, 557
Eco57I	CTGAAG	2 cut(s)	419, 777
EcoRII	CCWGG	5 cut(s)	259, 409, 583, 644, 761
EcoT14I	CCWWGG	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	4 cut(s)	251, 487, 565, 655
FaqI	GGGAC	3 cut(s)	293, 626, 639
FatI	CATG	4 cut(s)	247, 483, 561, 651
Fnu4HI	GCNGC	1 cut(s)	609
FokI	GGATG	2 cut(s)	227, 783
Fsp4HI	GCNGC	1 cut(s)	609
GluI	GCNGC	1 cut(s)	609
HaeIII	GGCC	3 cut(s)	117, 178, 327
Hin1II	CATG	4 cut(s)	251, 487, 565, 655
HinfI	GANTC	4 cut(s)	92, 220, 462, 509
HphI	GGTGA	1 cut(s)	249
Hpy166II	GTNNAC	4 cut(s)	481, 581, 753, 777
Hpy188I	TCNGA	4 cut(s)	192, 225, 425, 615
Hpy188III	TCNNGA	3 cut(s)	138, 238, 343
Hpy8I	GTNNAC	4 cut(s)	481, 581, 753, 777
HpyAV	CCTTC	1 cut(s)	264
HpyCH4III	ACNGT	1 cut(s)	518
HpyCH4V	TGCA	6 cut(s)	365, 457, 581, 657, 696, 794
HpyF10VI	GCNNNNNNNGC	2 cut(s)	316, 617
HpyF3I	CTNAG	5 cut(s)	168, 341, 612, 780, 813
Hsp92II	CATG	4 cut(s)	251, 487, 565, 655
Kzo9I	GATC	7 cut(s)	126, 140, 181, 289, 448, 676, 857
Lsp1109I	GCAGC	1 cut(s)	620
LweI	GCATC	1 cut(s)	658
MabI	ACCWGGT	1 cut(s)	583
MaeIII	GTNAC	1 cut(s)	710
MalI	GATC	7 cut(s)	128, 142, 183, 291, 450, 678, 859
MboI	GATC	7 cut(s)	126, 140, 181, 289, 448, 676, 857
MboII	GAAGA	1 cut(s)	57
MflI	RGATCY	3 cut(s)	126, 140, 181
MhlI	GDGCHC	2 cut(s)	48, 583
MlsI	TGGCCA	2 cut(s)	117, 178
MluCI	AATT	3 cut(s)	299, 419, 573
MluNI	TGGCCA	2 cut(s)	117, 178
MlyI	GAGTC	1 cut(s)	518
MnlI	CCTC	8 cut(s)	3, 88, 114, 117, 140, 200, 782, 808
Mox20I	TGGCCA	2 cut(s)	117, 178
MscI	TGGCCA	2 cut(s)	117, 178
MseI	TTAA	3 cut(s)	72, 687, 867
Msp20I	TGGCCA	2 cut(s)	117, 178
MspA1I	CMGCKG	1 cut(s)	812
MspR9I	CCNGG	5 cut(s)	261, 411, 585, 646, 763
MvaI	CCWGG	5 cut(s)	261, 411, 585, 646, 763
MwoI	GCNNNNNNNGC	2 cut(s)	316, 617
NcoI	CCATGG	1 cut(s)	561
NdeII	GATC	7 cut(s)	126, 140, 181, 289, 448, 676, 857
NlaIII	CATG	4 cut(s)	251, 487, 565, 655
NlaIV	GGNNCC	2 cut(s)	128, 559
NmuCI	GTSAC	1 cut(s)	710
PasI	CCCWGGG	1 cut(s)	645
PceI	AGGCCT	1 cut(s)	327
PfeI	GAWTC	3 cut(s)	92, 220, 462
PkrI	GCNGC	1 cut(s)	610
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
PsiI	TTATAA	1 cut(s)	738
Psp6I	CCWGG	5 cut(s)	259, 409, 583, 644, 761
PspGI	CCWGG	5 cut(s)	259, 409, 583, 644, 761
PspN4I	GGNNCC	2 cut(s)	128, 559
PspPI	GGNCC	4 cut(s)	350, 437, 521, 557
PsuI	RGATCY	3 cut(s)	126, 140, 181
PvuII	CAGCTG	1 cut(s)	812
RsaI	GTAC	2 cut(s)	315, 404
RsaNI	GTAC	2 cut(s)	314, 403
SaqAI	TTAA	3 cut(s)	72, 687, 867
SatI	GCNGC	1 cut(s)	609
Sau3AI	GATC	7 cut(s)	126, 140, 181, 289, 448, 676, 857
Sau96I	GGNCC	4 cut(s)	350, 437, 521, 557
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	5 cut(s)	261, 411, 585, 646, 763
SduI	GDGCHC	2 cut(s)	48, 583
SetI	ASST	9 cut(s)	256, 262, 312, 442, 503, 589, 613, 793, 814
SexAI	ACCWGGT	1 cut(s)	583
SfaNI	GCATC	1 cut(s)	658
SinI	GGWCC	4 cut(s)	350, 437, 521, 557
Sse9I	AATT	3 cut(s)	299, 419, 573
SseBI	AGGCCT	1 cut(s)	327
StuI	AGGCCT	1 cut(s)	327
StyD4I	CCNGG	5 cut(s)	259, 409, 583, 644, 761
StyI	CCWWGG	1 cut(s)	561
TaaI	ACNGT	1 cut(s)	518
TaqI	TCGA	1 cut(s)	507
TasI	AATT	3 cut(s)	299, 419, 573
TatI	WGTACW	1 cut(s)	402
TfiI	GAWTC	3 cut(s)	92, 220, 462
Tru1I	TTAA	3 cut(s)	72, 687, 867
Tru9I	TTAA	3 cut(s)	72, 687, 867
TscAI	CASTG	2 cut(s)	604, 640
TseFI	GTSAC	1 cut(s)	710
TseI	GCWGC	1 cut(s)	608
Tsp45I	GTSAC	1 cut(s)	710
TspDTI	ATGAA	4 cut(s)	264, 326, 503, 853
TspRI	CASTG	2 cut(s)	604, 640
VneI	GTGCAC	1 cut(s)	579
VpaK11BI	GGWCC	4 cut(s)	350, 437, 521, 557
XapI	RAATTY	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.