Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001950

Physical Location & Seq

Genomic Coordinates Reverse (-)

8577109 .. 8597242

Gene Structure 20134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG100700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGTTGAGCTCGTGGTTTGACAGGATGGTTGGCTGCGGATCTGGGCCGCATCTCTGGGCGTTGTTTTTATGTGTAGATCCAACAAGGGTGTTTTGGAGTGTTTGGGAGGGTCGGAGGCTTCCTGGACAGGCGCGGGGTGTTGGGATCATGGCGCTTCAGACAGTGGGACGCTGCATTGCTGCTTGTTTCATGGCGGCGGGGCCCAAGGCTGCTTTGGTCGAGGCAGTATGGGTCGTGGAGGCTGTGGCAGCAGATCTGGCTAGACTTATTAGGAAGTCAAAGGAAGGTGGACTCAATGCAATTGAGACTTATGTCTTCTGGAATGTGCATGAACCAGTTTGTCGTGAATACGATTTTACTGGTAATCTTGACCTGGTTAGGTTTATCAAAACGATTCAAGATGAAGGACTGTATGCTGTTCTTCGGATTGGTCCATATGTTTGTGCTGAATGGAATTATGGTTCTATCAGGAGTTCCATGGACTATGTGTCAATAATCAATGGCCTTAAGGTTGTCTATATACTGGACCAAGTGCGTGCCCTCGAGAATGAAATGCTTCAAAGAATTAAGAGGCAAGGATTAAACTTCGCTCCAAGAATCCTTATTGTAAGTGTCTTTATCATTGATGCAAGAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BetaGal_dom4_5 Gal_Lectin Glyco_hydro_35

Protein Analysis

212

Amino Acids

23.85

Weight (kDa)

8.55

Isoelectric Point (pI)

28.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	87 - 155	2.8e-29	Glycosyl hydrolases family 35
GT-B_Sucrose_synth	PF00862	169 - 211	1.4e-12	Sucrose synthase first GT-B domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13750
fragaria_vesca	FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260
malus_domestica	MD03G1276100.v1.1 MD05G1210900.v1.1 MD09G1193900.v1.1 MD11G1104200.v1.1 MD11G1105200.v1.1 MD15G1317000.v1.1 MD16G1228200.v1.1
prunus_persica	Prupe.3G050200_v2.0.a1
pyrus_communis	pycom09g11040 pycom111g03560 pycom15g12320
rosa_chinensis	RchiOBHm_Chr0c25g0500881 RchiOBHm_Chr1g0331081 RchiOBHm_Chr2g0142961 RchiOBHm_Chr6g0257481 RchiOBHm_Chr6g0266311
rosa_laevigata	RLG00000020004
rosa_multiflora	Rmu_sc0006428.1_g000002 Rmu_sc0008528.1_g000001 Rmu_sc0028483.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030970 Rroxscaffold_2G00102180 Rroxscaffold_7G00183160 Rroxscaffold_7G00216290
rosa_rugosa	Rorug02G0377400
rosa_samantha	Rh2AG100700 Rh2AG430500 Rh2BG138700 Rh2BG439500 Rh2CG416200 Rh2DG449500 Rh4CG196100 Rh5DG216000 Rh6AG145200 Rh6AG372600 Rh6AG422200 Rh6DG373500
rosa_wichuraiana	Rw2G035160 Rw5G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	133
AciI	CCGC	5 cut(s)	36, 47, 133, 194, 197
AclWI	GGATC	3 cut(s)	46, 71, 152
AcuI	CTGAAG	1 cut(s)	140
AflII	CTTAAG	1 cut(s)	506
AgsI	TTSAA	2 cut(s)	398, 560
AhdI	GACNNNNNGTC	1 cut(s)	487
AjnI	CCWGG	2 cut(s)	121, 372
AloI	GAACNNNNNNTCC	2 cut(s)	445, 477
AluBI	AGCT	1 cut(s)	9
AluI	AGCT	1 cut(s)	9
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	3 cut(s)	46, 71, 152
Ama87I	CYCGRG	1 cut(s)	542
AoxI	GGCC	3 cut(s)	44, 200, 502
ApaI	GGGCCC	1 cut(s)	204
ApeKI	GCWGC	5 cut(s)	33, 171, 179, 209, 248
Asp700I	GAANNNNTTC	1 cut(s)	555
AspLEI	GCGC	2 cut(s)	133, 154
AspS9I	GGNCC	5 cut(s)	44, 200, 201, 431, 526
AvaI	CYCGRG	1 cut(s)	542
AvaII	GGWCC	2 cut(s)	431, 526
BaeGI	GKGCMC	2 cut(s)	204, 541
BanII	GRGCYC	2 cut(s)	11, 204
BauI	CACGAG	1 cut(s)	10
BbsI	GAAGAC	1 cut(s)	307
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	5 cut(s)	20, 158, 166, 196, 260
BccI	CCATC	1 cut(s)	19
BciT130I	CCWGG	2 cut(s)	123, 374
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	1 cut(s)	261
BfoI	RGCGCY	1 cut(s)	155
BfrI	CTTAAG	1 cut(s)	506
BglII	AGATCT	1 cut(s)	253
BisI	GCNGC	7 cut(s)	34, 47, 172, 180, 195, 210, 249
BlsI	GCNGC	7 cut(s)	35, 48, 173, 181, 196, 211, 250
Bme1390I	CCNGG	2 cut(s)	123, 374
Bme18I	GGWCC	2 cut(s)	431, 526
BmeRI	GACNNNNNGTC	1 cut(s)	487
BmeT110I	CYCGRG	1 cut(s)	542
BmgT120I	GGNCC	5 cut(s)	44, 200, 201, 431, 526
BmiI	GGNNCC	2 cut(s)	201, 202
BmrFI	CCNGG	2 cut(s)	123, 374
BmsI	GCATC	2 cut(s)	58, 616
BoxI	GACNNNNGTC	1 cut(s)	311
BpiI	GAAGAC	1 cut(s)	307
BsaJI	CCNNGG	2 cut(s)	204, 477
Bse1I	ACTGG	3 cut(s)	335, 364, 528
Bse3DI	GCAATG	1 cut(s)	174
BseBI	CCWGG	2 cut(s)	123, 374
BseDI	CCNNGG	2 cut(s)	204, 477
BseGI	GGATG	1 cut(s)	30
BseMI	GCAATG	1 cut(s)	174
BseNI	ACTGG	3 cut(s)	335, 364, 528
BseSI	GKGCMC	2 cut(s)	204, 541
BseXI	GCAGC	5 cut(s)	20, 158, 166, 196, 260
Bsh1236I	CGCG	1 cut(s)	133
BshFI	GGCC	3 cut(s)	46, 202, 504
BsiHKAI	GWGCWC	1 cut(s)	11
BsiHKCI	CYCGRG	1 cut(s)	542
BslFI	GGGAC	1 cut(s)	180
BsmAI	GTCTC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	180
BsnI	GGCC	3 cut(s)	46, 202, 504
BsoBI	CYCGRG	1 cut(s)	542
Bsp120I	GGGCCC	1 cut(s)	200
Bsp1286I	GDGCHC	3 cut(s)	11, 204, 541
Bsp143I	GATC	4 cut(s)	38, 76, 144, 253
Bsp19I	CCATGG	1 cut(s)	477
BspACI	CCGC	5 cut(s)	36, 47, 133, 194, 197
BspANI	GGCC	3 cut(s)	46, 202, 504
BspFNI	CGCG	1 cut(s)	133
BspLI	GGNNCC	2 cut(s)	201, 202
BspPI	GGATC	3 cut(s)	46, 71, 152
BspTI	CTTAAG	1 cut(s)	506
BsrDI	GCAATG	1 cut(s)	174
BsrI	ACTGG	3 cut(s)	335, 364, 528
BssECI	CCNNGG	2 cut(s)	204, 477
BssMI	GATC	4 cut(s)	38, 76, 144, 253
BssSI	CACGAG	1 cut(s)	10
BssT1I	CCWWGG	2 cut(s)	204, 477
Bst2BI	CACGAG	1 cut(s)	10
Bst2UI	CCWGG	2 cut(s)	123, 374
Bst4CI	ACNGT	2 cut(s)	163, 411
BstAFI	CTTAAG	1 cut(s)	506
BstC8I	GCNNGC	1 cut(s)	537
BstDSI	CCRYGG	1 cut(s)	477
BstF5I	GGATG	1 cut(s)	30
BstFNI	CGCG	1 cut(s)	133
BstH2I	RGCGCY	1 cut(s)	155
BstHHI	GCGC	2 cut(s)	133, 154
BstKTI	GATC	4 cut(s)	41, 79, 147, 256
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	4 cut(s)	38, 76, 144, 253
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 257
BstNI	CCWGG	2 cut(s)	123, 374
BstPAI	GACNNNNGTC	1 cut(s)	311
BstSCI	CCNGG	2 cut(s)	121, 372
BstSLI	GKGCMC	2 cut(s)	204, 541
BstUI	CGCG	1 cut(s)	133
BstV1I	GCAGC	5 cut(s)	20, 158, 166, 196, 260
BstV2I	GAAGAC	1 cut(s)	307
BstX2I	RGATCY	3 cut(s)	38, 76, 253
BstYI	RGATCY	3 cut(s)	38, 76, 253
BsuRI	GGCC	3 cut(s)	46, 202, 504
BtgI	CCRYGG	1 cut(s)	477
BtsCI	GGATG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	1 cut(s)	537
CfoI	GCGC	2 cut(s)	133, 154
Cfr13I	GGNCC	5 cut(s)	44, 200, 201, 431, 526
CseI	GACGC	1 cut(s)	177
CsiI	ACCWGGT	1 cut(s)	372
CviAII	CATG	4 cut(s)	148, 190, 329, 478
CviJI	RGCY	9 cut(s)	9, 33, 46, 118, 202, 209, 242, 260, 504
CviKI_1	RGCY	9 cut(s)	9, 33, 46, 118, 202, 209, 242, 260, 504
DpnI	GATC	4 cut(s)	40, 78, 146, 255
DpnII	GATC	4 cut(s)	38, 76, 144, 253
DriI	GACNNNNNGTC	1 cut(s)	487
Eam1105I	GACNNNNNGTC	1 cut(s)	487
Ecl136II	GAGCTC	1 cut(s)	9
Eco130I	CCWWGG	2 cut(s)	204, 477
Eco24I	GRGCYC	2 cut(s)	11, 204
Eco47I	GGWCC	2 cut(s)	431, 526
Eco53kI	GAGCTC	1 cut(s)	9
Eco57I	CTGAAG	1 cut(s)	140
Eco88I	CYCGRG	1 cut(s)	542
EcoICRI	GAGCTC	1 cut(s)	9
EcoO109I	RGGNCCY	1 cut(s)	200
EcoRII	CCWGG	2 cut(s)	121, 372
EcoT14I	CCWWGG	2 cut(s)	204, 477
EcoT38I	GRGCYC	2 cut(s)	11, 204
ErhI	CCWWGG	2 cut(s)	204, 477
FaeI	CATG	4 cut(s)	151, 193, 332, 481
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	4 cut(s)	147, 189, 328, 477
FauI	CCCGC	2 cut(s)	126, 190
FauNDI	CATATG	1 cut(s)	436
Fnu4HI	GCNGC	7 cut(s)	34, 47, 172, 180, 195, 210, 249
FokI	GGATG	1 cut(s)	37
FriOI	GRGCYC	2 cut(s)	11, 204
Fsp4HI	GCNGC	7 cut(s)	34, 47, 172, 180, 195, 210, 249
FspBI	CTAG	1 cut(s)	261
GlaI	GCGC	2 cut(s)	132, 153
GluI	GCNGC	7 cut(s)	34, 47, 172, 180, 195, 210, 249
HaeII	RGCGCY	1 cut(s)	155
HaeIII	GGCC	3 cut(s)	46, 202, 504
HgaI	GACGC	1 cut(s)	177
HhaI	GCGC	2 cut(s)	133, 154
Hin1II	CATG	4 cut(s)	151, 193, 332, 481
Hin6I	GCGC	2 cut(s)	131, 152
HinP1I	GCGC	2 cut(s)	131, 152
HinfI	GANTC	3 cut(s)	291, 394, 597
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188I	TCNGA	3 cut(s)	114, 159, 426
Hpy188III	TCNNGA	6 cut(s)	319, 344, 368, 398, 469, 544
Hpy8I	GTNNAC	1 cut(s)	290
HpyAV	CCTTC	2 cut(s)	278, 398
HpyCH4III	ACNGT	2 cut(s)	163, 411
HpyCH4V	TGCA	4 cut(s)	174, 299, 328, 629
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 257
Hsp92II	CATG	4 cut(s)	151, 193, 332, 481
HspAI	GCGC	2 cut(s)	131, 152
Kzo9I	GATC	4 cut(s)	38, 76, 144, 253
LmnI	GCTCC	1 cut(s)	595
Lsp1109I	GCAGC	5 cut(s)	20, 158, 166, 196, 260
LweI	GCATC	2 cut(s)	58, 616
MabI	ACCWGGT	1 cut(s)	372
MaeI	CTAG	1 cut(s)	261
MalI	GATC	4 cut(s)	40, 78, 146, 255
MboI	GATC	4 cut(s)	38, 76, 144, 253
MboII	GAAGA	2 cut(s)	307, 413
MfeI	CAATTG	1 cut(s)	300
MflI	RGATCY	3 cut(s)	38, 76, 253
MhlI	GDGCHC	3 cut(s)	11, 204, 541
MluCI	AATT	3 cut(s)	300, 454, 564
MlyI	GAGTC	1 cut(s)	285
MmeI	TCCRAC	2 cut(s)	92, 104
MnlI	CCTC	6 cut(s)	100, 108, 214, 232, 551, 564
MroXI	GAANNNNTTC	1 cut(s)	555
MseI	TTAA	3 cut(s)	507, 567, 581
MspCI	CTTAAG	1 cut(s)	506
MspR9I	CCNGG	2 cut(s)	123, 374
MunI	CAATTG	1 cut(s)	300
MvaI	CCWGG	2 cut(s)	123, 374
MvnI	CGCG	1 cut(s)	133
MwoI	GCNNNNNNNGC	2 cut(s)	248, 257
NcoI	CCATGG	1 cut(s)	477
NdeI	CATATG	1 cut(s)	436
NdeII	GATC	4 cut(s)	38, 76, 144, 253
NlaIII	CATG	4 cut(s)	151, 193, 332, 481
NlaIV	GGNNCC	2 cut(s)	201, 202
PaeR7I	CTCGAG	1 cut(s)	542
PdmI	GAANNNNTTC	1 cut(s)	555
PfeI	GAWTC	2 cut(s)	394, 597
PfoI	TCCNGGA	1 cut(s)	121
PkrI	GCNGC	7 cut(s)	35, 48, 173, 181, 196, 211, 250
PleI	GAGTC	1 cut(s)	285
PpsI	GAGTC	1 cut(s)	285
PshAI	GACNNNNGTC	1 cut(s)	311
Psp124BI	GAGCTC	1 cut(s)	11
Psp6I	CCWGG	2 cut(s)	121, 372
PspGI	CCWGG	2 cut(s)	121, 372
PspN4I	GGNNCC	2 cut(s)	201, 202
PspOMI	GGGCCC	1 cut(s)	200
PspPI	GGNCC	5 cut(s)	44, 200, 201, 431, 526
PsuI	RGATCY	3 cut(s)	38, 76, 253
SacI	GAGCTC	1 cut(s)	11
SaqAI	TTAA	3 cut(s)	507, 567, 581
SatI	GCNGC	7 cut(s)	34, 47, 172, 180, 195, 210, 249
Sau3AI	GATC	4 cut(s)	38, 76, 144, 253
Sau96I	GGNCC	5 cut(s)	44, 200, 201, 431, 526
SchI	GAGTC	1 cut(s)	285
ScrFI	CCNGG	2 cut(s)	123, 374
SduI	GDGCHC	3 cut(s)	11, 204, 541
SetI	ASST	5 cut(s)	11, 289, 375, 383, 513
SexAI	ACCWGGT	1 cut(s)	372
SfaNI	GCATC	2 cut(s)	58, 616
Sfr274I	CTCGAG	1 cut(s)	542
SinI	GGWCC	2 cut(s)	431, 526
SlaI	CTCGAG	1 cut(s)	542
SmlI	CTYRAG	2 cut(s)	506, 542
SmoI	CTYRAG	2 cut(s)	506, 542
Sse9I	AATT	3 cut(s)	300, 454, 564
SsiI	CCGC	5 cut(s)	36, 47, 133, 194, 197
SspMI	CTAG	1 cut(s)	261
SstI	GAGCTC	1 cut(s)	11
StyD4I	CCNGG	2 cut(s)	121, 372
StyI	CCWWGG	2 cut(s)	204, 477
TaaI	ACNGT	2 cut(s)	163, 411
TaqI	TCGA	2 cut(s)	219, 543
TasI	AATT	3 cut(s)	300, 454, 564
TauI	GCSGC	2 cut(s)	49, 197
TfiI	GAWTC	2 cut(s)	394, 597
Tru1I	TTAA	3 cut(s)	507, 567, 581
Tru9I	TTAA	3 cut(s)	507, 567, 581
TscAI	CASTG	1 cut(s)	168
TseI	GCWGC	5 cut(s)	33, 171, 179, 209, 248
TspDTI	ATGAA	4 cut(s)	178, 345, 417, 564
TspRI	CASTG	1 cut(s)	168
Vha464I	CTTAAG	1 cut(s)	506
VpaK11BI	GGWCC	2 cut(s)	431, 526
XcmI	CCANNNNNNNNNTGG	1 cut(s)	211
XhoI	CTCGAG	1 cut(s)	542
XmnI	GAANNNNTTC	1 cut(s)	555
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.