Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001950

Physical Location & Seq

Genomic Coordinates Forward (+)

57118111 .. 57119543

Gene Structure 1433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG372600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAACCCCAAAAAGGACAGTGGTTTTCCAGTTTGGTTAAGGAACGTTCCGGGCATTGTTTTCCGGTCTGATAATGAACCGTATAAGGCTGAAATGCAGAGGTTTACAGCAAAAATAGTAGACCTAATGAAATCAAATGGACTGTACGCTTCACAAGGCGGACCGATTATATTGTCACAGATTGAGAACGAGTACCAAAATGTGGAAGCGGCGTTTCATGAAAAGGGACCTCCTTATGTTCTTTGGGCTGCATCCATGGCGGAGGGCCTTCAAACTGGTGTGCCCTGGGTTATGTGCAAGCAAAATGATGCTCCCGGCGCTGTGATCAATGCATGTAATGGGTTGAGGTGTGGAGAAACCTTTGCTGGCCCAAATGCCCCTAATAAGCCAGCAATTTGGACAGAGGACTGGACAAGCCAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BetaGal_dom4_5 Gal_Lectin Glyco_hydro_35

Protein Analysis

141

Amino Acids

15.53

Weight (kDa)

5.37

Isoelectric Point (pI)

44.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	8 - 140	4.4e-33	Glycosyl hydrolases family 35

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13750
fragaria_vesca	FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260
malus_domestica	MD03G1276100.v1.1 MD05G1210900.v1.1 MD09G1193900.v1.1 MD11G1104200.v1.1 MD11G1105200.v1.1 MD15G1317000.v1.1 MD16G1228200.v1.1
prunus_persica	Prupe.3G050200_v2.0.a1
pyrus_communis	pycom09g11040 pycom111g03560 pycom15g12320
rosa_chinensis	RchiOBHm_Chr0c25g0500881 RchiOBHm_Chr1g0331081 RchiOBHm_Chr2g0142961 RchiOBHm_Chr6g0257481 RchiOBHm_Chr6g0266311
rosa_laevigata	RLG00000020004
rosa_multiflora	Rmu_sc0006428.1_g000002 Rmu_sc0008528.1_g000001 Rmu_sc0028483.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030970 Rroxscaffold_2G00102180 Rroxscaffold_7G00183160 Rroxscaffold_7G00216290
rosa_rugosa	Rorug02G0377400
rosa_samantha	Rh2AG100700 Rh2AG430500 Rh2BG138700 Rh2BG439500 Rh2CG416200 Rh2DG449500 Rh4CG196100 Rh5DG216000 Rh6AG145200 Rh6AG372600 Rh6AG422200 Rh6DG373500
rosa_wichuraiana	Rw2G035160 Rw5G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	202
AccI	GTMKAC	1 cut(s)	120
AciI	CCGC	3 cut(s)	159, 209, 260
AclI	AACGTT	1 cut(s)	45
AfaI	GTAC	2 cut(s)	146, 194
AfiI	CCNNNNNNNGG	2 cut(s)	13, 202
AgsI	TTSAA	1 cut(s)	272
AjnI	CCWGG	1 cut(s)	284
AoxI	GGCC	2 cut(s)	265, 367
ApeKI	GCWGC	1 cut(s)	248
AspLEI	GCGC	1 cut(s)	320
AspS9I	GGNCC	4 cut(s)	161, 227, 265, 368
AsuC2I	CCSGG	2 cut(s)	51, 315
AvaII	GGWCC	2 cut(s)	161, 227
BaeGI	GKGCMC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	235
BciT130I	CCWGG	1 cut(s)	286
BclI	TGATCA	1 cut(s)	324
BcnI	CCSGG	2 cut(s)	51, 315
BfoI	RGCGCY	1 cut(s)	321
BisI	GCNGC	2 cut(s)	210, 249
BlsI	GCNGC	2 cut(s)	211, 250
Bme1390I	CCNGG	3 cut(s)	51, 286, 315
Bme18I	GGWCC	2 cut(s)	161, 227
BmgT120I	GGNCC	4 cut(s)	161, 227, 265, 368
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	3 cut(s)	51, 286, 315
BmsI	GCATC	2 cut(s)	260, 298
BpuMI	CCSGG	2 cut(s)	51, 315
BsaJI	CCNNGG	3 cut(s)	255, 284, 285
BsaWI	WCCGGW	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 202
Bse1I	ACTGG	3 cut(s)	29, 280, 413
BseBI	CCWGG	1 cut(s)	286
BseDI	CCNNGG	3 cut(s)	255, 284, 285
BseGI	GGATG	1 cut(s)	251
BseLI	CCNNNNNNNGG	2 cut(s)	13, 202
BseNI	ACTGG	3 cut(s)	29, 280, 413
BseSI	GKGCMC	1 cut(s)	285
BseXI	GCAGC	1 cut(s)	235
BshFI	GGCC	2 cut(s)	267, 369
BsiSI	CCGG	3 cut(s)	50, 64, 315
BslFI	GGGAC	1 cut(s)	240
BslI	CCNNNNNNNGG	2 cut(s)	13, 202
BsmFI	GGGAC	1 cut(s)	240
BsnI	GGCC	2 cut(s)	267, 369
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	1 cut(s)	324
Bsp19I	CCATGG	1 cut(s)	255
BspACI	CCGC	3 cut(s)	159, 209, 260
BspANI	GGCC	2 cut(s)	267, 369
BspHI	TCATGA	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	228
BsrI	ACTGG	3 cut(s)	29, 280, 413
BssECI	CCNNGG	3 cut(s)	255, 284, 285
BssMI	GATC	1 cut(s)	324
BssT1I	CCWWGG	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	286
Bst4CI	ACNGT	3 cut(s)	20, 81, 144
BstC8I	GCNNGC	3 cut(s)	299, 367, 390
BstDSI	CCRYGG	1 cut(s)	255
BstF5I	GGATG	1 cut(s)	251
BstH2I	RGCGCY	1 cut(s)	321
BstHHI	GCGC	1 cut(s)	320
BstKTI	GATC	1 cut(s)	327
BstMBI	GATC	1 cut(s)	324
BstMWI	GCNNNNNNNGC	2 cut(s)	257, 317
BstNI	CCWGG	1 cut(s)	286
BstNSI	RCATGY	1 cut(s)	336
BstSCI	CCNGG	3 cut(s)	49, 284, 313
BstSLI	GKGCMC	1 cut(s)	285
BstV1I	GCAGC	1 cut(s)	235
BstXI	CCANNNNNNTGG	1 cut(s)	396
BsuRI	GGCC	2 cut(s)	267, 369
BtgI	CCRYGG	1 cut(s)	255
BtsCI	GGATG	1 cut(s)	251
BtsIMutI	CAGTG	1 cut(s)	25
Cac8I	GCNNGC	3 cut(s)	299, 367, 390
CciI	TCATGA	1 cut(s)	217
CfoI	GCGC	1 cut(s)	320
Cfr13I	GGNCC	4 cut(s)	161, 227, 265, 368
CpoI	CGGWCCG	1 cut(s)	161
Csp6I	GTAC	2 cut(s)	145, 193
CspI	CGGWCCG	1 cut(s)	161
CviAII	CATG	3 cut(s)	218, 256, 333
CviJI	RGCY	6 cut(s)	89, 248, 267, 369, 388, 417
CviKI_1	RGCY	6 cut(s)	89, 248, 267, 369, 388, 417
CviQI	GTAC	2 cut(s)	145, 193
DpnI	GATC	1 cut(s)	326
DpnII	GATC	1 cut(s)	324
EciI	GGCGGA	2 cut(s)	174, 275
Eco130I	CCWWGG	1 cut(s)	255
Eco47I	GGWCC	2 cut(s)	161, 227
EcoO109I	RGGNCCY	2 cut(s)	227, 265
EcoRII	CCWGG	1 cut(s)	284
EcoT14I	CCWWGG	1 cut(s)	255
EcoT22I	ATGCAT	1 cut(s)	334
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	3 cut(s)	221, 259, 336
FaiI	YATR	8 cut(s)	84, 170, 219, 237, 257, 293, 334, 424
FaqI	GGGAC	1 cut(s)	240
FatI	CATG	3 cut(s)	217, 255, 332
FbaI	TGATCA	1 cut(s)	324
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	2 cut(s)	210, 249
FokI	GGATG	1 cut(s)	238
Fsp4HI	GCNGC	2 cut(s)	210, 249
GlaI	GCGC	1 cut(s)	319
GluI	GCNGC	2 cut(s)	210, 249
HaeII	RGCGCY	1 cut(s)	321
HaeIII	GGCC	2 cut(s)	267, 369
HapII	CCGG	3 cut(s)	50, 64, 315
HhaI	GCGC	1 cut(s)	320
Hin1II	CATG	3 cut(s)	221, 259, 336
Hin6I	GCGC	1 cut(s)	318
HinP1I	GCGC	1 cut(s)	318
HpaII	CCGG	3 cut(s)	50, 64, 315
Hpy166II	GTNNAC	2 cut(s)	105, 121
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	2 cut(s)	105, 121
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	3 cut(s)	20, 81, 144
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	4 cut(s)	97, 251, 297, 332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	257, 317
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	3 cut(s)	221, 259, 336
HspAI	GCGC	1 cut(s)	318
Ksp22I	TGATCA	1 cut(s)	324
Kzo9I	GATC	1 cut(s)	324
LmnI	GCTCC	1 cut(s)	316
Lsp1109I	GCAGC	1 cut(s)	235
LweI	GCATC	2 cut(s)	260, 298
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	174
MalI	GATC	1 cut(s)	326
MboI	GATC	1 cut(s)	324
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	1 cut(s)	393
MnlI	CCTC	5 cut(s)	93, 240, 256, 339, 397
Mph1103I	ATGCAT	1 cut(s)	334
MseI	TTAA	1 cut(s)	38
MspI	CCGG	3 cut(s)	50, 64, 315
MspR9I	CCNGG	3 cut(s)	51, 286, 315
MvaI	CCWGG	1 cut(s)	286
MwoI	GCNNNNNNNGC	2 cut(s)	257, 317
NciI	CCSGG	2 cut(s)	51, 315
NcoI	CCATGG	1 cut(s)	255
NdeII	GATC	1 cut(s)	324
NlaIII	CATG	3 cut(s)	221, 259, 336
NlaIV	GGNNCC	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	174
NsiI	ATGCAT	1 cut(s)	334
NspI	RCATGY	1 cut(s)	336
PagI	TCATGA	1 cut(s)	217
PasI	CCCWGGG	1 cut(s)	285
PflMI	CCANNNNNTGG	1 cut(s)	202
PkrI	GCNGC	2 cut(s)	211, 250
PpuMI	RGGWCCY	1 cut(s)	227
Psp1406I	AACGTT	1 cut(s)	45
Psp5II	RGGWCCY	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	4 cut(s)	161, 227, 265, 368
PspPPI	RGGWCCY	1 cut(s)	227
RsaI	GTAC	2 cut(s)	146, 194
RsaNI	GTAC	2 cut(s)	145, 193
Rsr2I	CGGWCCG	1 cut(s)	161
RsrII	CGGWCCG	1 cut(s)	161
SaqAI	TTAA	1 cut(s)	38
SatI	GCNGC	2 cut(s)	210, 249
Sau3AI	GATC	1 cut(s)	324
Sau96I	GGNCC	4 cut(s)	161, 227, 265, 368
ScrFI	CCNGG	3 cut(s)	51, 286, 315
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	6 cut(s)	48, 104, 126, 232, 350, 362
SfaNI	GCATC	2 cut(s)	260, 298
SinI	GGWCC	2 cut(s)	161, 227
Sse9I	AATT	1 cut(s)	393
SsiI	CCGC	3 cut(s)	159, 209, 260
StyD4I	CCNGG	3 cut(s)	49, 284, 313
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	3 cut(s)	20, 81, 144
TaiI	ACGT	1 cut(s)	48
TaqII	GACCGA	1 cut(s)	178
TasI	AATT	1 cut(s)	393
TauI	GCSGC	1 cut(s)	212
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TscAI	CASTG	1 cut(s)	25
TseFI	GTSAC	1 cut(s)	174
TseI	GCWGC	1 cut(s)	248
Tsp45I	GTSAC	1 cut(s)	174
TspDTI	ATGAA	5 cut(s)	17, 90, 143, 206, 234
TspRI	CASTG	1 cut(s)	25
Van91I	CCANNNNNTGG	1 cut(s)	202
VpaK11BI	GGWCC	2 cut(s)	161, 227
XceI	RCATGY	1 cut(s)	336
XmiI	GTMKAC	1 cut(s)	120
Zsp2I	ATGCAT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.