Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001950

Physical Location & Seq

Genomic Coordinates Reverse (-)

8838982 .. 8839387

Gene Structure 406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1104200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGCAGAAGGCAGGGCTCTATGCTCGCCTTCGCATTGGCCCTTATGTTTGTGTTGAGTGGAACTTTGGGGGTTTTCCTATTTGGCAGAGGCAAGTTTTGATTTTTACTTTTCTTTTTTCTCACATGGGACTCTCGGAGAAGCATGTAATGGAGACACCACTTCTGTCATTATCTTTGGAAGTATTTGATGGTCGACTGGATGATCCTATTAGTGTGTCCATCCGAGGAGGTTTGTATTCATCTGTCCACTCTTTTTGGAAAAATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

90

Amino Acids

10.22

Weight (kDa)

7.95

Isoelectric Point (pI)

23.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	2 - 32	7.8e-11	Glycosyl hydrolases family 35

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13750
fragaria_vesca	FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260
malus_domestica	MD03G1276100.v1.1 MD05G1210900.v1.1 MD09G1193900.v1.1 MD11G1104200.v1.1 MD11G1105200.v1.1 MD15G1317000.v1.1 MD16G1228200.v1.1
prunus_persica	Prupe.3G050200_v2.0.a1
pyrus_communis	pycom09g11040 pycom111g03560 pycom15g12320
rosa_chinensis	RchiOBHm_Chr0c25g0500881 RchiOBHm_Chr1g0331081 RchiOBHm_Chr2g0142961 RchiOBHm_Chr6g0257481 RchiOBHm_Chr6g0266311
rosa_laevigata	RLG00000020004
rosa_multiflora	Rmu_sc0006428.1_g000002 Rmu_sc0008528.1_g000001 Rmu_sc0028483.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030970 Rroxscaffold_2G00102180 Rroxscaffold_7G00183160 Rroxscaffold_7G00216290
rosa_rugosa	Rorug02G0377400
rosa_samantha	Rh2AG100700 Rh2AG430500 Rh2BG138700 Rh2BG439500 Rh2CG416200 Rh2DG449500 Rh4CG196100 Rh5DG216000 Rh6AG145200 Rh6AG372600 Rh6AG422200 Rh6DG373500
rosa_wichuraiana	Rw2G035160 Rw5G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	193
AclWI	GGATC	1 cut(s)	197
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	197
AoxI	GGCC	1 cut(s)	37
AspS9I	GGNCC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	18
BccI	CCATC	2 cut(s)	182, 227
BcoDI	GTCTC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	2 cut(s)	205, 219
BseNI	ACTGG	1 cut(s)	201
BseRI	GAGGAG	1 cut(s)	240
BshFI	GGCC	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	141
BsmAI	GTCTC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	141
BsnI	GGCC	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	1 cut(s)	202
BspANI	GGCC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	25
BstF5I	GGATG	2 cut(s)	205, 219
BstKTI	GATC	1 cut(s)	205
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	1 cut(s)	202
BstNSI	RCATGY	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	39
BtsCI	GGATG	2 cut(s)	205, 219
Cac8I	GCNNGC	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	38
CspCI	CAANNNNNGTGG	1 cut(s)	236
CviAII	CATG	2 cut(s)	124, 143
CviJI	RGCY	2 cut(s)	16, 39
CviKI_1	RGCY	2 cut(s)	16, 39
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	18
FaeI	CATG	2 cut(s)	127, 146
FaiI	YATR	4 cut(s)	21, 45, 125, 144
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	2 cut(s)	123, 142
FblI	GTMKAC	1 cut(s)	193
FokI	GGATG	2 cut(s)	206, 212
FriOI	GRGCYC	1 cut(s)	18
HaeIII	GGCC	1 cut(s)	39
Hin1II	CATG	2 cut(s)	127, 146
HincII	GTYRAC	1 cut(s)	194
HindII	GTYRAC	1 cut(s)	194
HinfI	GANTC	1 cut(s)	129
Hpy166II	GTNNAC	2 cut(s)	194, 247
Hpy188I	TCNGA	2 cut(s)	136, 224
Hpy8I	GTNNAC	2 cut(s)	194, 247
HpyAV	CCTTC	1 cut(s)	38
HpyCH4V	TGCA	1 cut(s)	4
Hsp92II	CATG	2 cut(s)	127, 146
Kzo9I	GATC	1 cut(s)	202
LpnPI	CCDG	1 cut(s)	182
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MhlI	GDGCHC	1 cut(s)	18
MlyI	GAGTC	1 cut(s)	123
MnlI	CCTC	3 cut(s)	81, 218, 221
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	2 cut(s)	127, 146
NspI	RCATGY	1 cut(s)	146
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
PspPI	GGNCC	1 cut(s)	38
SalI	GTCGAC	1 cut(s)	192
Sau3AI	GATC	1 cut(s)	202
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	1 cut(s)	123
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	1 cut(s)	232
SgeI	CNNG	8 cut(s)	24, 36, 104, 136, 145, 155, 209, 236
TaqI	TCGA	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	228
XceI	RCATGY	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.