Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001950

Physical Location & Seq

Genomic Coordinates Reverse (-)

8973461 .. 8974748

Gene Structure 1288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1105200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGAACTTCGGGGGATTCCCAGTTTGGCTGAAATATGTCTCCGGAATTGTTTTTCGAAGGACAATGAGCCTTTCAAGGCAGAGAAGCTGTTTCAAACTCAAGGAGGTCCTATAATTCTTTCTCAGAAAGATGATTATAATTTAGTTGCTCCAAAGATAAAACATGGATTTGTTTATGAGATTTCACATTTCTATACGGGCAAAGTAAAACATCACACAAAATTGTCCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009664 GO:0009791 GO:0009827 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0015925 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0042545 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048046 GO:0048316 GO:0048354 GO:0048359 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BetaGal_dom4_5 Gal_Lectin Glyco_hydro_35

Protein Analysis

78

Amino Acids

8.87

Weight (kDa)

8.95

Isoelectric Point (pI)

24.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13750
fragaria_vesca	FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260
malus_domestica	MD03G1276100.v1.1 MD05G1210900.v1.1 MD09G1193900.v1.1 MD11G1104200.v1.1 MD11G1105200.v1.1 MD15G1317000.v1.1 MD16G1228200.v1.1
prunus_persica	Prupe.3G050200_v2.0.a1
pyrus_communis	pycom09g11040 pycom111g03560 pycom15g12320
rosa_chinensis	RchiOBHm_Chr0c25g0500881 RchiOBHm_Chr1g0331081 RchiOBHm_Chr2g0142961 RchiOBHm_Chr6g0257481 RchiOBHm_Chr6g0266311
rosa_laevigata	RLG00000020004
rosa_multiflora	Rmu_sc0006428.1_g000002 Rmu_sc0008528.1_g000001 Rmu_sc0028483.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030970 Rroxscaffold_2G00102180 Rroxscaffold_7G00183160 Rroxscaffold_7G00216290
rosa_rugosa	Rorug02G0377400
rosa_samantha	Rh2AG100700 Rh2AG430500 Rh2BG138700 Rh2BG439500 Rh2CG416200 Rh2DG449500 Rh4CG196100 Rh5DG216000 Rh6AG145200 Rh6AG372600 Rh6AG422200 Rh6DG373500
rosa_wichuraiana	Rw2G035160 Rw5G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	138
AccIII	TCCGGA	1 cut(s)	42
AgsI	TTSAA	2 cut(s)	76, 95
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
Alw26I	GTCTC	1 cut(s)	44
Aor13HI	TCCGGA	1 cut(s)	42
AspS9I	GGNCC	1 cut(s)	107
AsuII	TTCGAA	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	107
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	1 cut(s)	232
Bme18I	GGWCC	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	107
BmrI	ACTGGG	1 cut(s)	15
BmuI	ACTGGG	1 cut(s)	15
Bpu14I	TTCGAA	1 cut(s)	56
BpuEI	CTTGAG	1 cut(s)	84
BsaWI	WCCGGW	1 cut(s)	42
Bse1I	ACTGG	1 cut(s)	21
BseAI	TCCGGA	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	137
BseNI	ACTGG	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	44
Bsp119I	TTCGAA	1 cut(s)	56
Bsp13I	TCCGGA	1 cut(s)	42
BspCNI	CTCAG	1 cut(s)	136
BspEI	TCCGGA	1 cut(s)	42
BspT104I	TTCGAA	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	21
BstBI	TTCGAA	1 cut(s)	56
BstDEI	CTNAG	1 cut(s)	123
BstMAI	GTCTC	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	107
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	3 cut(s)	29, 70, 88
CviKI_1	RGCY	3 cut(s)	29, 70, 88
DdeI	CTNAG	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	107
EcoO109I	RGGNCCY	1 cut(s)	107
FaeI	CATG	1 cut(s)	167
FaiI	YATR	6 cut(s)	37, 113, 138, 165, 177, 195
FatI	CATG	1 cut(s)	163
FspBI	CTAG	1 cut(s)	232
HapII	CCGG	1 cut(s)	43
Hin1II	CATG	1 cut(s)	167
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	52
HpyF3I	CTNAG	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	167
Kpn2I	TCCGGA	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	2 cut(s)	34, 56
MaeI	CTAG	1 cut(s)	232
MluCI	AATT	4 cut(s)	46, 114, 139, 221
MnlI	CCTC	1 cut(s)	98
MroI	TCCGGA	1 cut(s)	42
MspI	CCGG	1 cut(s)	43
NlaIII	CATG	1 cut(s)	167
NspV	TTCGAA	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	16
PpuMI	RGGWCCY	1 cut(s)	107
PsiI	TTATAA	1 cut(s)	138
Psp5II	RGGWCCY	1 cut(s)	107
PspPI	GGNCC	1 cut(s)	107
PspPPI	RGGWCCY	1 cut(s)	107
Sau96I	GGNCC	1 cut(s)	107
SetI	ASST	2 cut(s)	90, 109
SfuI	TTCGAA	1 cut(s)	56
SgeI	CNNG	7 cut(s)	23, 33, 55, 88, 113, 176, 210
SinI	GGWCC	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	99
SmoI	CTYRAG	1 cut(s)	99
Sse9I	AATT	4 cut(s)	46, 114, 139, 221
SspMI	CTAG	1 cut(s)	232
TaqI	TCGA	1 cut(s)	56
TasI	AATT	4 cut(s)	46, 114, 139, 221
TfiI	GAWTC	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	107
XspI	CTAG	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.