Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001950

Physical Location & Seq

Genomic Coordinates Reverse (-)

42276906 .. 42283290

Gene Structure 6385 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00030970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGTCATGGGGTTGAGCAAAAGGAAGGCATGTGCTGACCGTTTTGAGGGGAGATATGATCTTGTACGGTTCATAAGGACAGTACAGAAAGCAGGGCTCTACCTTCATCTGCGAATTGGACCTTATGTTTGTGCAGAATGGAATTTTGGAGGAGAAGTGATAGGCAATGAATTATCTTGGCTGGGAAGTGATCTTGGCTGGGAAGTGATACCAATTCAGTTCTGGACATTGCCTATTTATAGGGGAGCATTGGAAGTGATAGGCAATGAATTATCTTGGCTGGGAAGTGATGCTTGGCTGGGAAGTGATCTTGGCTGGGAAGTGATCTTGGCTGGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

113

Amino Acids

12.75

Weight (kDa)

5.33

Isoelectric Point (pI)

18.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	13 - 51	1.7e-15	Glycosyl hydrolases family 35

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13750
fragaria_vesca	FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260
malus_domestica	MD03G1276100.v1.1 MD05G1210900.v1.1 MD09G1193900.v1.1 MD11G1104200.v1.1 MD11G1105200.v1.1 MD15G1317000.v1.1 MD16G1228200.v1.1
prunus_persica	Prupe.3G050200_v2.0.a1
pyrus_communis	pycom09g11040 pycom111g03560 pycom15g12320
rosa_chinensis	RchiOBHm_Chr0c25g0500881 RchiOBHm_Chr1g0331081 RchiOBHm_Chr2g0142961 RchiOBHm_Chr6g0257481 RchiOBHm_Chr6g0266311
rosa_laevigata	RLG00000020004
rosa_multiflora	Rmu_sc0006428.1_g000002 Rmu_sc0008528.1_g000001 Rmu_sc0028483.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030970 Rroxscaffold_2G00102180 Rroxscaffold_7G00183160 Rroxscaffold_7G00216290
rosa_rugosa	Rorug02G0377400
rosa_samantha	Rh2AG100700 Rh2AG430500 Rh2BG138700 Rh2BG439500 Rh2CG416200 Rh2DG449500 Rh4CG196100 Rh5DG216000 Rh6AG145200 Rh6AG372600 Rh6AG422200 Rh6DG373500
rosa_wichuraiana	Rw2G035160 Rw5G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	142
AfaI	GTAC	2 cut(s)	66, 84
AfiI	CCNNNNNNNGG	1 cut(s)	46
AjuI	GAANNNNNNNTTGG	4 cut(s)	129, 161, 277, 309
ApoI	RAATTY	1 cut(s)	142
ArsI	GACNNNNNNTTYG	2 cut(s)	111, 143
AspS9I	GGNCC	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	99
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmsI	GCATC	1 cut(s)	280
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse3DI	GCAATG	3 cut(s)	172, 227, 271
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMI	GCAATG	3 cut(s)	172, 227, 271
BseRI	GAGGAG	1 cut(s)	165
BseYI	CCCAGC	6 cut(s)	181, 198, 280, 298, 315, 332
BsgI	GTGCAG	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	4 cut(s)	58, 190, 307, 324
BsrDI	GCAATG	3 cut(s)	172, 227, 271
BssMI	GATC	4 cut(s)	58, 190, 307, 324
Bst4CI	ACNGT	3 cut(s)	41, 69, 82
BstKTI	GATC	4 cut(s)	61, 193, 310, 327
BstMBI	GATC	4 cut(s)	58, 190, 307, 324
BstNSI	RCATGY	1 cut(s)	33
Cfr13I	GGNCC	1 cut(s)	119
Csp6I	GTAC	2 cut(s)	65, 83
CviAII	CATG	2 cut(s)	7, 30
CviJI	RGCY	7 cut(s)	97, 181, 198, 280, 298, 315, 332
CviKI_1	RGCY	7 cut(s)	97, 181, 198, 280, 298, 315, 332
CviQI	GTAC	2 cut(s)	65, 83
DpnI	GATC	4 cut(s)	60, 192, 309, 326
DpnII	GATC	4 cut(s)	58, 190, 307, 324
Eco24I	GRGCYC	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	119
EcoT38I	GRGCYC	1 cut(s)	99
FaeI	CATG	2 cut(s)	10, 33
FaiI	YATR	6 cut(s)	8, 31, 57, 74, 126, 240
FalI	AAGNNNNNCTT	2 cut(s)	277, 309
FatI	CATG	2 cut(s)	6, 29
FriOI	GRGCYC	1 cut(s)	99
GsaI	CCCAGC	6 cut(s)	185, 202, 284, 302, 319, 336
Hin1II	CATG	2 cut(s)	10, 33
Hpy188III	TCNNGA	1 cut(s)	223
HpyAV	CCTTC	2 cut(s)	19, 113
HpyCH4III	ACNGT	3 cut(s)	41, 69, 82
HpyCH4V	TGCA	1 cut(s)	134
Hsp92II	CATG	2 cut(s)	10, 33
Kzo9I	GATC	4 cut(s)	58, 190, 307, 324
LmnI	GCTCC	1 cut(s)	245
LpnPI	CCDG	8 cut(s)	78, 167, 184, 208, 266, 284, 301, 318
LweI	GCATC	1 cut(s)	280
MalI	GATC	4 cut(s)	60, 192, 309, 326
MboI	GATC	4 cut(s)	58, 190, 307, 324
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	5 cut(s)	114, 142, 170, 213, 269
MnlI	CCTC	2 cut(s)	40, 143
NdeII	GATC	4 cut(s)	58, 190, 307, 324
NlaIII	CATG	2 cut(s)	10, 33
NspI	RCATGY	1 cut(s)	33
PspFI	CCCAGC	6 cut(s)	181, 198, 280, 298, 315, 332
PspPI	GGNCC	1 cut(s)	119
RsaI	GTAC	2 cut(s)	66, 84
RsaNI	GTAC	2 cut(s)	65, 83
Sau3AI	GATC	4 cut(s)	58, 190, 307, 324
Sau96I	GGNCC	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	2 cut(s)	105, 124
SfaNI	GCATC	1 cut(s)	280
SinI	GGWCC	1 cut(s)	119
Sse9I	AATT	5 cut(s)	114, 142, 170, 213, 269
TaaI	ACNGT	3 cut(s)	41, 69, 82
TasI	AATT	5 cut(s)	114, 142, 170, 213, 269
TatI	WGTACW	1 cut(s)	82
TspDTI	ATGAA	4 cut(s)	61, 95, 183, 282
VpaK11BI	GGWCC	1 cut(s)	119
XapI	RAATTY	1 cut(s)	142
XceI	RCATGY	1 cut(s)	33
XcmI	CCANNNNNNNNNTGG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.