Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001950

Physical Location & Seq

Genomic Coordinates Forward (+)

23270407 .. 23274435

Gene Structure 4029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1228200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGTATGATCTGGTGAGGTTTCTCAAGGCCATACAGAAGGCAGGACTCTATGCTCACCTTCACATTGGCCCTTATGCTTGTGCTGAGTGGAACTTTGGGTTGAAGGAGTCAGCGATGGAATTTTGGATGCCGAAGAGAAGAAGCCTTATTATTTCTTCTTTCTTTTTGAGTGAGCATCTCTTTCTTTTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

65

Amino Acids

7.62

Weight (kDa)

8.93

Isoelectric Point (pI)

70.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	2 - 33	4.8e-10	Glycosyl hydrolases family 35

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13750
fragaria_vesca	FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260
malus_domestica	MD03G1276100.v1.1 MD05G1210900.v1.1 MD09G1193900.v1.1 MD11G1104200.v1.1 MD11G1105200.v1.1 MD15G1317000.v1.1 MD16G1228200.v1.1
prunus_persica	Prupe.3G050200_v2.0.a1
pyrus_communis	pycom09g11040 pycom111g03560 pycom15g12320
rosa_chinensis	RchiOBHm_Chr0c25g0500881 RchiOBHm_Chr1g0331081 RchiOBHm_Chr2g0142961 RchiOBHm_Chr6g0257481 RchiOBHm_Chr6g0266311
rosa_laevigata	RLG00000020004
rosa_multiflora	Rmu_sc0006428.1_g000002 Rmu_sc0008528.1_g000001 Rmu_sc0028483.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030970 Rroxscaffold_2G00102180 Rroxscaffold_7G00183160 Rroxscaffold_7G00216290
rosa_rugosa	Rorug02G0377400
rosa_samantha	Rh2AG100700 Rh2AG430500 Rh2BG138700 Rh2BG439500 Rh2CG416200 Rh2DG449500 Rh4CG196100 Rh5DG216000 Rh6AG145200 Rh6AG372600 Rh6AG422200 Rh6DG373500
rosa_wichuraiana	Rw2G035160 Rw5G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	119
AgsI	TTSAA	1 cut(s)	103
AoxI	GGCC	2 cut(s)	27, 67
ApoI	RAATTY	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	68
AsuHPI	GGTGA	2 cut(s)	25, 47
BccI	CCATC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	68
BmsI	GCATC	2 cut(s)	117, 184
BpuEI	CTTGAG	1 cut(s)	8
BseGI	GGATG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	75
BshFI	GGCC	2 cut(s)	29, 69
BsnI	GGCC	2 cut(s)	29, 69
Bsp143I	GATC	1 cut(s)	7
BspANI	GGCC	2 cut(s)	29, 69
BspCNI	CTCAG	1 cut(s)	76
BssMI	GATC	1 cut(s)	7
Bst6I	CTCTTC	1 cut(s)	128
BstDEI	CTNAG	1 cut(s)	84
BstF5I	GGATG	1 cut(s)	132
BstKTI	GATC	1 cut(s)	10
BstMBI	GATC	1 cut(s)	7
BsuRI	GGCC	2 cut(s)	29, 69
BtgZI	GCGATG	1 cut(s)	128
BtsCI	GGATG	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	68
CviJI	RGCY	3 cut(s)	29, 69, 144
CviKI_1	RGCY	3 cut(s)	29, 69, 144
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
FaiI	YATR	4 cut(s)	6, 32, 51, 75
FokI	GGATG	1 cut(s)	139
HaeIII	GGCC	2 cut(s)	29, 69
HinfI	GANTC	2 cut(s)	45, 107
HphI	GGTGA	2 cut(s)	25, 47
HpyAV	CCTTC	3 cut(s)	31, 68, 97
HpyF3I	CTNAG	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	7
LpnPI	CCDG	1 cut(s)	27
LweI	GCATC	2 cut(s)	117, 184
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	4 cut(s)	145, 147, 150, 181
MluCI	AATT	1 cut(s)	119
MlyI	GAGTC	2 cut(s)	39, 116
MnlI	CCTC	1 cut(s)	9
NdeII	GATC	1 cut(s)	7
PleI	GAGTC	2 cut(s)	39, 115
PpsI	GAGTC	2 cut(s)	39, 115
PspPI	GGNCC	1 cut(s)	68
Sau3AI	GATC	1 cut(s)	7
Sau96I	GGNCC	1 cut(s)	68
SchI	GAGTC	2 cut(s)	39, 116
SetI	ASST	2 cut(s)	20, 60
SfaNI	GCATC	2 cut(s)	117, 184
SgeI	CNNG	4 cut(s)	23, 37, 54, 90
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	1 cut(s)	119
TasI	AATT	1 cut(s)	119
XapI	RAATTY	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.