Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0001950

Physical Location & Seq

Genomic Coordinates Forward (+)

2188231 .. 2188663

Gene Structure 433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g03560.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGCAGAAGGCAGGGCTCTATGCTCACCTTCACATTGGCCCTTATGTTTGTGTTGAGGGGCTCTCGGAGAAGCATGTAATGGAGACACCACTTCTGTCATTATCTTTGGAAGTATTTGATGGTCAACTGGATGATCCTATTAGCATGTCCATCCGAGGAGGTTTGTATTCATCTTTCCACTTTTTTAGAAAAATGTTTAGAAATCATAAAGATGCTTCTGAAGATAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

77

Amino Acids

8.68

Weight (kDa)

6.16

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13750
fragaria_vesca	FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260
malus_domestica	MD03G1276100.v1.1 MD05G1210900.v1.1 MD09G1193900.v1.1 MD11G1104200.v1.1 MD11G1105200.v1.1 MD15G1317000.v1.1 MD16G1228200.v1.1
prunus_persica	Prupe.3G050200_v2.0.a1
pyrus_communis	pycom09g11040 pycom111g03560 pycom15g12320
rosa_chinensis	RchiOBHm_Chr0c25g0500881 RchiOBHm_Chr1g0331081 RchiOBHm_Chr2g0142961 RchiOBHm_Chr6g0257481 RchiOBHm_Chr6g0266311
rosa_laevigata	RLG00000020004
rosa_multiflora	Rmu_sc0006428.1_g000002 Rmu_sc0008528.1_g000001 Rmu_sc0028483.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030970 Rroxscaffold_2G00102180 Rroxscaffold_7G00183160 Rroxscaffold_7G00216290
rosa_rugosa	Rorug02G0377400
rosa_samantha	Rh2AG100700 Rh2AG430500 Rh2BG138700 Rh2BG439500 Rh2CG416200 Rh2DG449500 Rh4CG196100 Rh5DG216000 Rh6AG145200 Rh6AG372600 Rh6AG422200 Rh6DG373500
rosa_wichuraiana	Rw2G035160 Rw5G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	128
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	1 cut(s)	128
AoxI	GGCC	1 cut(s)	37
AspS9I	GGNCC	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	17
BanII	GRGCYC	2 cut(s)	18, 63
BccI	CCATC	2 cut(s)	113, 158
BcoDI	GTCTC	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	38
BmsI	GCATC	1 cut(s)	202
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
BsaJI	CCNNGG	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	2 cut(s)	136, 150
BseNI	ACTGG	1 cut(s)	132
BseRI	GAGGAG	1 cut(s)	171
BshFI	GGCC	1 cut(s)	39
BsmAI	GTCTC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	39
Bsp1286I	GDGCHC	2 cut(s)	18, 63
Bsp143I	GATC	1 cut(s)	133
BspANI	GGCC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	1 cut(s)	133
BstF5I	GGATG	2 cut(s)	136, 150
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	1 cut(s)	133
BstNSI	RCATGY	2 cut(s)	77, 148
BsuRI	GGCC	1 cut(s)	39
BtsCI	GGATG	2 cut(s)	136, 150
Cfr13I	GGNCC	1 cut(s)	38
CviAII	CATG	2 cut(s)	74, 145
CviJI	RGCY	3 cut(s)	16, 39, 61
CviKI_1	RGCY	3 cut(s)	16, 39, 61
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Eco24I	GRGCYC	2 cut(s)	18, 63
EcoT38I	GRGCYC	2 cut(s)	18, 63
FaeI	CATG	2 cut(s)	77, 148
FaiI	YATR	5 cut(s)	21, 45, 75, 146, 207
FatI	CATG	2 cut(s)	73, 144
FokI	GGATG	2 cut(s)	137, 143
FriOI	GRGCYC	2 cut(s)	18, 63
HaeIII	GGCC	1 cut(s)	39
Hin1II	CATG	2 cut(s)	77, 148
HincII	GTYRAC	1 cut(s)	125
HindII	GTYRAC	1 cut(s)	125
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	3 cut(s)	67, 155, 220
Hpy8I	GTNNAC	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	38
HpyCH4V	TGCA	1 cut(s)	4
Hsp92II	CATG	2 cut(s)	77, 148
Kzo9I	GATC	1 cut(s)	133
LpnPI	CCDG	1 cut(s)	113
LweI	GCATC	1 cut(s)	202
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MhlI	GDGCHC	2 cut(s)	18, 63
MnlI	CCTC	3 cut(s)	49, 149, 152
MslI	CAYNNNNRTG	1 cut(s)	210
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	2 cut(s)	77, 148
NspI	RCATGY	2 cut(s)	77, 148
PspPI	GGNCC	1 cut(s)	38
RseI	CAYNNNNRTG	1 cut(s)	210
Sau3AI	GATC	1 cut(s)	133
Sau96I	GGNCC	1 cut(s)	38
SduI	GDGCHC	2 cut(s)	18, 63
SetI	ASST	3 cut(s)	30, 163, 230
SfaNI	GCATC	1 cut(s)	202
SgeI	CNNG	6 cut(s)	24, 76, 86, 140, 157, 167
SmiMI	CAYNNNNRTG	1 cut(s)	210
TspDTI	ATGAA	1 cut(s)	159
XceI	RCATGY	2 cut(s)	77, 148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.