Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001950

Physical Location & Seq

Genomic Coordinates Forward (+)

11870990 .. 11874714

Gene Structure 3725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG138700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGGCAGAGGAGAATCCTCATGTCTGGTTCAATACACTACCCCAGAAGCACTCCTGAGGGGTTTTCCTGTTTGGCTGAAATATGTTCCAGGCATCAGTTTCAGAACAGACAATGAGCCTTTCAAGATTGAGAATGAGTACGGAGTACAGAGCAAGTTATTTGGAGCTGCTGGACATAATTACATGACCTGGGCAGCAGAGATGGCTGTTGGGTTGGGAACTGGGGTCCCATGGGTGATGTGCAAGGAAGAAGATGCTCCAGATCCAGTGCCAAAGTATGGTCATTTGAAGGAGCTTCATAAGTCTATTAAGATGTGTGAACGGGCTTTAGTTTCAGCTGATCCAATCATCACTTCACTTGGGGACTTTCAACAGAATGTGGGCGGACACTACGAAGCATGGAATACAGGAATCCTTGGCCCAGTTGCACTTCATGGACTTGACCAGGGAAAATGGGACTTGTCTTGGCAGAAATGGACCTACCAGGTAGGTGATCTTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

167

Amino Acids

18.57

Weight (kDa)

5.48

Isoelectric Point (pI)

33.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13750
fragaria_vesca	FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260
malus_domestica	MD03G1276100.v1.1 MD05G1210900.v1.1 MD09G1193900.v1.1 MD11G1104200.v1.1 MD11G1105200.v1.1 MD15G1317000.v1.1 MD16G1228200.v1.1
prunus_persica	Prupe.3G050200_v2.0.a1
pyrus_communis	pycom09g11040 pycom111g03560 pycom15g12320
rosa_chinensis	RchiOBHm_Chr0c25g0500881 RchiOBHm_Chr1g0331081 RchiOBHm_Chr2g0142961 RchiOBHm_Chr6g0257481 RchiOBHm_Chr6g0266311
rosa_laevigata	RLG00000020004
rosa_multiflora	Rmu_sc0006428.1_g000002 Rmu_sc0008528.1_g000001 Rmu_sc0028483.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030970 Rroxscaffold_2G00102180 Rroxscaffold_7G00183160 Rroxscaffold_7G00216290
rosa_rugosa	Rorug02G0377400
rosa_samantha	Rh2AG100700 Rh2AG430500 Rh2BG138700 Rh2BG439500 Rh2CG416200 Rh2DG449500 Rh4CG196100 Rh5DG216000 Rh6AG145200 Rh6AG372600 Rh6AG422200 Rh6DG373500
rosa_wichuraiana	Rw2G035160 Rw5G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	278
AciI	CCGC	1 cut(s)	384
AclWI	GGATC	2 cut(s)	257, 335
AfaI	GTAC	2 cut(s)	140, 147
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgsI	TTSAA	4 cut(s)	32, 124, 289, 371
AjnI	CCWGG	4 cut(s)	88, 188, 444, 483
AjuI	GAANNNNNNNTTGG	2 cut(s)	337, 369
AluBI	AGCT	3 cut(s)	167, 295, 338
AluI	AGCT	3 cut(s)	167, 295, 338
AlwI	GGATC	2 cut(s)	257, 335
AoxI	GGCC	1 cut(s)	418
ApeKI	GCWGC	2 cut(s)	167, 194
AspS9I	GGNCC	3 cut(s)	226, 419, 477
AsuHPI	GGTGA	2 cut(s)	247, 503
AvaII	GGWCC	2 cut(s)	226, 477
AxyI	CCTNAGG	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	154, 206
BccI	CCATC	1 cut(s)	196
BciT130I	CCWGG	4 cut(s)	90, 190, 446, 485
BisI	GCNGC	2 cut(s)	168, 195
BlsI	GCNGC	2 cut(s)	169, 196
Bme1390I	CCNGG	4 cut(s)	90, 190, 446, 485
Bme18I	GGWCC	2 cut(s)	226, 477
BmgT120I	GGNCC	3 cut(s)	226, 419, 477
BmiI	GGNNCC	2 cut(s)	227, 228
BmrFI	CCNGG	4 cut(s)	90, 190, 446, 485
BmrI	ACTGGG	2 cut(s)	231, 416
BmsI	GCATC	2 cut(s)	102, 244
BmuI	ACTGGG	2 cut(s)	231, 416
BpmI	CTGGAG	1 cut(s)	243
BsaJI	CCNNGG	4 cut(s)	189, 230, 415, 445
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse1I	ACTGG	3 cut(s)	226, 266, 422
Bse21I	CCTNAGG	1 cut(s)	56
BseBI	CCWGG	4 cut(s)	90, 190, 446, 485
BseDI	CCNNGG	4 cut(s)	189, 230, 415, 445
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseMII	CTCAG	1 cut(s)	47
BseNI	ACTGG	3 cut(s)	226, 266, 422
BseRI	GAGGAG	1 cut(s)	24
BseXI	GCAGC	2 cut(s)	154, 206
BshFI	GGCC	1 cut(s)	420
BslFI	GGGAC	3 cut(s)	212, 377, 470
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmFI	GGGAC	3 cut(s)	212, 377, 470
BsnI	GGCC	1 cut(s)	420
Bsp143I	GATC	3 cut(s)	262, 340, 493
Bsp19I	CCATGG	1 cut(s)	230
BspACI	CCGC	1 cut(s)	384
BspANI	GGCC	1 cut(s)	420
BspCNI	CTCAG	1 cut(s)	48
BspLI	GGNNCC	2 cut(s)	227, 228
BspPI	GGATC	2 cut(s)	257, 335
BsrI	ACTGG	3 cut(s)	226, 266, 422
BssECI	CCNNGG	4 cut(s)	189, 230, 415, 445
BssMI	GATC	3 cut(s)	262, 340, 493
BssT1I	CCWWGG	2 cut(s)	230, 415
Bst2UI	CCWGG	4 cut(s)	90, 190, 446, 485
BstDEI	CTNAG	2 cut(s)	56, 501
BstDSI	CCRYGG	1 cut(s)	230
BstKTI	GATC	3 cut(s)	265, 343, 496
BstMBI	GATC	3 cut(s)	262, 340, 493
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNI	CCWGG	4 cut(s)	90, 190, 446, 485
BstSCI	CCNGG	4 cut(s)	88, 188, 444, 483
BstV1I	GCAGC	2 cut(s)	154, 206
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
Bsu36I	CCTNAGG	1 cut(s)	56
BsuRI	GGCC	1 cut(s)	420
BtgI	CCRYGG	1 cut(s)	230
BtsIMutI	CAGTG	1 cut(s)	273
Cfr13I	GGNCC	3 cut(s)	226, 419, 477
CsiI	ACCWGGT	1 cut(s)	483
Csp6I	GTAC	2 cut(s)	139, 146
CviAII	CATG	5 cut(s)	21, 184, 231, 399, 434
CviJI	RGCY	8 cut(s)	76, 118, 167, 206, 295, 326, 338, 420
CviKI_1	RGCY	8 cut(s)	76, 118, 167, 206, 295, 326, 338, 420
CviQI	GTAC	2 cut(s)	139, 146
DdeI	CTNAG	2 cut(s)	56, 501
DpnI	GATC	3 cut(s)	264, 342, 495
DpnII	GATC	3 cut(s)	262, 340, 493
EciI	GGCGGA	1 cut(s)	399
Eco130I	CCWWGG	2 cut(s)	230, 415
Eco47I	GGWCC	2 cut(s)	226, 477
Eco81I	CCTNAGG	1 cut(s)	56
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRII	CCWGG	4 cut(s)	88, 188, 444, 483
EcoT14I	CCWWGG	2 cut(s)	230, 415
ErhI	CCWWGG	2 cut(s)	230, 415
FaeI	CATG	5 cut(s)	24, 187, 234, 402, 437
FaiI	YATR	9 cut(s)	22, 84, 177, 185, 232, 279, 300, 400, 435
FaqI	GGGAC	3 cut(s)	212, 377, 470
FatI	CATG	5 cut(s)	20, 183, 230, 398, 433
Fnu4HI	GCNGC	2 cut(s)	168, 195
Fsp4HI	GCNGC	2 cut(s)	168, 195
GluI	GCNGC	2 cut(s)	168, 195
GsuI	CTGGAG	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	420
Hin1II	CATG	5 cut(s)	24, 187, 234, 402, 437
HinfI	GANTC	2 cut(s)	14, 411
HphI	GGTGA	2 cut(s)	247, 503
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188I	TCNGA	1 cut(s)	104
Hpy188III	TCNNGA	3 cut(s)	55, 124, 260
Hpy8I	GTNNAC	1 cut(s)	320
HpyAV	CCTTC	1 cut(s)	283
HpyCH4V	TGCA	2 cut(s)	243, 428
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	2 cut(s)	56, 501
Hsp92II	CATG	5 cut(s)	24, 187, 234, 402, 437
KflI	GGGWCCC	1 cut(s)	226
Kzo9I	GATC	3 cut(s)	262, 340, 493
LmnI	GCTCC	3 cut(s)	164, 262, 292
Lsp1109I	GCAGC	2 cut(s)	154, 206
LweI	GCATC	2 cut(s)	102, 244
MabI	ACCWGGT	1 cut(s)	483
MalI	GATC	3 cut(s)	264, 342, 495
MboI	GATC	3 cut(s)	262, 340, 493
MboII	GAAGA	2 cut(s)	260, 263
MflI	RGATCY	1 cut(s)	262
MluCI	AATT	1 cut(s)	178
MnlI	CCTC	2 cut(s)	28, 51
MseI	TTAA	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	338
MspR9I	CCNGG	4 cut(s)	90, 190, 446, 485
MvaI	CCWGG	4 cut(s)	90, 190, 446, 485
MwoI	GCNNNNNNNGC	1 cut(s)	203
NcoI	CCATGG	1 cut(s)	230
NdeII	GATC	3 cut(s)	262, 340, 493
NlaIII	CATG	5 cut(s)	24, 187, 234, 402, 437
NlaIV	GGNNCC	2 cut(s)	227, 228
PfeI	GAWTC	2 cut(s)	14, 411
PflMI	CCANNNNNTGG	1 cut(s)	278
PkrI	GCNGC	2 cut(s)	169, 196
PpuMI	RGGWCCY	1 cut(s)	226
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	4 cut(s)	88, 188, 444, 483
PspGI	CCWGG	4 cut(s)	88, 188, 444, 483
PspN4I	GGNNCC	2 cut(s)	227, 228
PspPI	GGNCC	3 cut(s)	226, 419, 477
PspPPI	RGGWCCY	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	262
PvuII	CAGCTG	1 cut(s)	338
RsaI	GTAC	2 cut(s)	140, 147
RsaNI	GTAC	2 cut(s)	139, 146
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	2 cut(s)	168, 195
Sau3AI	GATC	3 cut(s)	262, 340, 493
Sau96I	GGNCC	3 cut(s)	226, 419, 477
ScrFI	CCNGG	4 cut(s)	90, 190, 446, 485
SetI	ASST	7 cut(s)	169, 191, 297, 340, 482, 489, 493
SexAI	ACCWGGT	1 cut(s)	483
SfaNI	GCATC	2 cut(s)	102, 244
SinI	GGWCC	2 cut(s)	226, 477
Sse9I	AATT	1 cut(s)	178
SsiI	CCGC	1 cut(s)	384
StyD4I	CCNGG	4 cut(s)	88, 188, 444, 483
StyI	CCWWGG	2 cut(s)	230, 415
TasI	AATT	1 cut(s)	178
TatI	WGTACW	1 cut(s)	145
TfiI	GAWTC	2 cut(s)	14, 411
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	273
TseI	GCWGC	2 cut(s)	167, 194
TspDTI	ATGAA	2 cut(s)	287, 422
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	1 cut(s)	273
Van91I	CCANNNNNTGG	1 cut(s)	278
VpaK11BI	GGWCC	2 cut(s)	226, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.