Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001950

Physical Location & Seq

Genomic Coordinates Forward (+)

25293879 .. 25294928

Gene Structure 1050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G019430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGCCTTCAAATGGGTTTTTCTTTTTTGTTTCTGCTCTCTTACTGTGTCAACTGTGTTCCGCCCTGCCCGTGGAGGTCGATTACAATGGAAGAGCCATCACAATTGATGGTGATAGAAGAATCATAATCTCTGGCTCTATTCACTACCCAAGGAGTACTCCTGAAATGTGGCCTGACTTGATCCAAAAAGCAAAAGATGGAGGCCTTAATGCTATTGATACTTACGTCTTTTGGAACGCACATGAATCTATGCGTCGGCAGTACGATTTCTCAGGAAACCTGGACTTGGTGAGATTCATTCAGACCATCCAAAAGGCAGGGCTCTATGCAATTCTTCGGATTGGACCATATGTTTGTGCAGAATGGAATTATGGTGGTTTTCCTGTGTGGTTGCATAACATTCCAGGCATCAAACTGAGGACAAACAATGATATCTATAAGAATGAGATGCAAACCTTTACAACTTTGATAGTGGACATGATGAAGCATGAGAATCTTTTTGCTTCACAAGGCGGACCTGTTATACTTGCTCAGGTTGTGATTGATTGCATTTTACTCTCTCTACCTTTAATATTACTCCTTAATTTTGATGATAACATACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BetaGal_dom4_5 Gal_Lectin Glyco_hydro_35

Protein Analysis

201

Amino Acids

22.8

Weight (kDa)

5.48

Isoelectric Point (pI)

40.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	33 - 179	3.9e-67	Glycosyl hydrolases family 35

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13750
fragaria_vesca	FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260
malus_domestica	MD03G1276100.v1.1 MD05G1210900.v1.1 MD09G1193900.v1.1 MD11G1104200.v1.1 MD11G1105200.v1.1 MD15G1317000.v1.1 MD16G1228200.v1.1
prunus_persica	Prupe.3G050200_v2.0.a1
pyrus_communis	pycom09g11040 pycom111g03560 pycom15g12320
rosa_chinensis	RchiOBHm_Chr0c25g0500881 RchiOBHm_Chr1g0331081 RchiOBHm_Chr2g0142961 RchiOBHm_Chr6g0257481 RchiOBHm_Chr6g0266311
rosa_laevigata	RLG00000020004
rosa_multiflora	Rmu_sc0006428.1_g000002 Rmu_sc0008528.1_g000001 Rmu_sc0028483.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030970 Rroxscaffold_2G00102180 Rroxscaffold_7G00183160 Rroxscaffold_7G00216290
rosa_rugosa	Rorug02G0377400
rosa_samantha	Rh2AG100700 Rh2AG430500 Rh2BG138700 Rh2BG439500 Rh2CG416200 Rh2DG449500 Rh4CG196100 Rh5DG216000 Rh6AG145200 Rh6AG372600 Rh6AG422200 Rh6DG373500
rosa_wichuraiana	Rw2G035160 Rw5G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	60, 513
AclWI	GGATC	1 cut(s)	175
AfaI	GTAC	2 cut(s)	157, 263
AfiI	CCNNNNNNNGG	3 cut(s)	11, 70, 286
AgsI	TTSAA	1 cut(s)	9
AjnI	CCWGG	2 cut(s)	279, 403
AlwI	GGATC	1 cut(s)	175
AoxI	GGCC	2 cut(s)	170, 202
ArsI	GACNNNNNNTTYG	2 cut(s)	336, 368
AspS9I	GGNCC	2 cut(s)	344, 515
AsuHPI	GGTGA	2 cut(s)	122, 301
AvaII	GGWCC	2 cut(s)	344, 515
BaeI	ACNNNNGTAYC	2 cut(s)	210, 243
BanII	GRGCYC	1 cut(s)	324
BccI	CCATC	4 cut(s)	101, 104, 191, 314
BciT130I	CCWGG	2 cut(s)	281, 405
BmcAI	AGTACT	1 cut(s)	157
Bme1390I	CCNGG	2 cut(s)	281, 405
Bme18I	GGWCC	2 cut(s)	344, 515
BmgT120I	GGNCC	2 cut(s)	344, 515
BmrFI	CCNGG	2 cut(s)	281, 405
BmsI	GCATC	2 cut(s)	417, 438
Bpu10I	CCTNAGC	1 cut(s)	531
BsaJI	CCNNGG	2 cut(s)	69, 149
Bsc4I	CCNNNNNNNGG	3 cut(s)	11, 70, 286
BseBI	CCWGG	2 cut(s)	281, 405
BseDI	CCNNGG	2 cut(s)	69, 149
BseGI	GGATG	1 cut(s)	306
BseLI	CCNNNNNNNGG	3 cut(s)	11, 70, 286
BseMII	CTCAG	3 cut(s)	285, 407, 545
BsgI	GTGCAG	1 cut(s)	378
BshFI	GGCC	2 cut(s)	172, 204
BslI	CCNNNNNNNGG	3 cut(s)	11, 70, 286
BsnI	GGCC	2 cut(s)	172, 204
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	1 cut(s)	180
BspACI	CCGC	2 cut(s)	60, 513
BspANI	GGCC	2 cut(s)	172, 204
BspCNI	CTCAG	3 cut(s)	284, 408, 544
BspPI	GGATC	1 cut(s)	175
BspQI	GCTCTTC	1 cut(s)	85
BssECI	CCNNGG	2 cut(s)	69, 149
BssMI	GATC	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	149
Bst2UI	CCWGG	2 cut(s)	281, 405
Bst4CI	ACNGT	3 cut(s)	45, 54, 603
Bst6I	CTCTTC	1 cut(s)	85
BstDEI	CTNAG	3 cut(s)	271, 416, 531
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	1 cut(s)	306
BstKTI	GATC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	180
BstNI	CCWGG	2 cut(s)	281, 405
BstSCI	CCNGG	2 cut(s)	279, 403
BsuRI	GGCC	2 cut(s)	172, 204
BtgI	CCRYGG	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	306
Cfr13I	GGNCC	2 cut(s)	344, 515
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	2 cut(s)	156, 262
CviAII	CATG	3 cut(s)	242, 478, 488
CviJI	RGCY	5 cut(s)	95, 135, 172, 204, 322
CviKI_1	RGCY	5 cut(s)	95, 135, 172, 204, 322
CviQI	GTAC	2 cut(s)	156, 262
DdeI	CTNAG	3 cut(s)	271, 416, 531
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
EciI	GGCGGA	2 cut(s)	49, 528
Eco130I	CCWWGG	1 cut(s)	149
Eco147I	AGGCCT	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	324
Eco32I	GATATC	1 cut(s)	433
Eco47I	GGWCC	2 cut(s)	344, 515
EcoRII	CCWGG	2 cut(s)	279, 403
EcoRV	GATATC	1 cut(s)	433
EcoT14I	CCWWGG	1 cut(s)	149
EcoT38I	GRGCYC	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	3 cut(s)	245, 481, 491
FatI	CATG	3 cut(s)	241, 477, 487
FauNDI	CATATG	1 cut(s)	349
FokI	GGATG	1 cut(s)	293
FriOI	GRGCYC	1 cut(s)	324
HaeIII	GGCC	2 cut(s)	172, 204
HgaI	GACGC	1 cut(s)	242
Hin1II	CATG	3 cut(s)	245, 481, 491
HincII	GTYRAC	1 cut(s)	50
HindII	GTYRAC	1 cut(s)	50
HinfI	GANTC	4 cut(s)	120, 245, 294, 493
HphI	GGTGA	2 cut(s)	122, 301
Hpy166II	GTNNAC	2 cut(s)	50, 475
Hpy188I	TCNGA	2 cut(s)	303, 339
Hpy188III	TCNNGA	2 cut(s)	161, 273
Hpy8I	GTNNAC	2 cut(s)	50, 475
Hpy99I	CGWCG	1 cut(s)	258
HpyAV	CCTTC	1 cut(s)	15
HpyCH4III	ACNGT	3 cut(s)	45, 54, 603
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	5 cut(s)	329, 359, 394, 451, 549
HpyF3I	CTNAG	3 cut(s)	271, 416, 531
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	3 cut(s)	245, 481, 491
Kzo9I	GATC	1 cut(s)	180
LguI	GCTCTTC	1 cut(s)	85
LweI	GCATC	2 cut(s)	417, 438
MaeII	ACGT	1 cut(s)	225
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	3 cut(s)	102, 129, 326
MfeI	CAATTG	1 cut(s)	102
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	4 cut(s)	102, 330, 367, 583
MnlI	CCTC	3 cut(s)	67, 194, 411
MseI	TTAA	3 cut(s)	207, 569, 582
MspR9I	CCNGG	2 cut(s)	281, 405
MunI	CAATTG	1 cut(s)	102
MvaI	CCWGG	2 cut(s)	281, 405
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	3 cut(s)	245, 481, 491
PceI	AGGCCT	1 cut(s)	204
PciSI	GCTCTTC	1 cut(s)	85
PfeI	GAWTC	4 cut(s)	120, 245, 294, 493
Psp6I	CCWGG	2 cut(s)	279, 403
PspGI	CCWGG	2 cut(s)	279, 403
PspPI	GGNCC	2 cut(s)	344, 515
RsaI	GTAC	2 cut(s)	157, 263
RsaNI	GTAC	2 cut(s)	156, 262
SapI	GCTCTTC	1 cut(s)	85
SaqAI	TTAA	3 cut(s)	207, 569, 582
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	2 cut(s)	344, 515
ScaI	AGTACT	1 cut(s)	157
ScrFI	CCNGG	2 cut(s)	281, 405
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	7 cut(s)	78, 228, 282, 458, 520, 537, 568
SfaNI	GCATC	2 cut(s)	417, 438
SinI	GGWCC	2 cut(s)	344, 515
Sse9I	AATT	4 cut(s)	102, 330, 367, 583
SseBI	AGGCCT	1 cut(s)	204
SsiI	CCGC	2 cut(s)	60, 513
SspI	AATATT	1 cut(s)	573
StuI	AGGCCT	1 cut(s)	204
StyD4I	CCNGG	2 cut(s)	279, 403
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	3 cut(s)	45, 54, 603
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	1 cut(s)	78
TasI	AATT	4 cut(s)	102, 330, 367, 583
TatI	WGTACW	1 cut(s)	155
TfiI	GAWTC	4 cut(s)	120, 245, 294, 493
Tru1I	TTAA	3 cut(s)	207, 569, 582
Tru9I	TTAA	3 cut(s)	207, 569, 582
TspDTI	ATGAA	3 cut(s)	258, 286, 497
VpaK11BI	GGWCC	2 cut(s)	344, 515
ZrmI	AGTACT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.