Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008528.1

Orthogroup ID

OG0001950

Physical Location & Seq

Genomic Coordinates Forward (+)

475 .. 1035

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008528.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

atgtggccatctctgatcggaaaagccaaggaaggaggacttgatgtgattcaaacctatgtgttttggaaccttcacgagcctcaaccgggtcagtacgatttcagtggaagatatgatctagtaaagttcataaaggaaatccaagcacaagggctttatgcttgccttaggattggaccattcattgagagtgaatggacatatgggggttttccattttggctgcatgatgtcccaggcatagtttaccgcacagataatgagccctttaaggcatgcactcttcctataactaattatatagtgatgattccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009664 GO:0009791 GO:0009827 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0015925 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0042545 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048046 GO:0048316 GO:0048354 GO:0048359 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BetaGal_dom4_5 Gal_Lectin Glyco_hydro_35

Protein Analysis

106

Amino Acids

12.25

Weight (kDa)

5.19

Isoelectric Point (pI)

50.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13750
fragaria_vesca	FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260
malus_domestica	MD03G1276100.v1.1 MD05G1210900.v1.1 MD09G1193900.v1.1 MD11G1104200.v1.1 MD11G1105200.v1.1 MD15G1317000.v1.1 MD16G1228200.v1.1
prunus_persica	Prupe.3G050200_v2.0.a1
pyrus_communis	pycom09g11040 pycom111g03560 pycom15g12320
rosa_chinensis	RchiOBHm_Chr0c25g0500881 RchiOBHm_Chr1g0331081 RchiOBHm_Chr2g0142961 RchiOBHm_Chr6g0257481 RchiOBHm_Chr6g0266311
rosa_laevigata	RLG00000020004
rosa_multiflora	Rmu_sc0006428.1_g000002 Rmu_sc0008528.1_g000001 Rmu_sc0028483.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030970 Rroxscaffold_2G00102180 Rroxscaffold_7G00183160 Rroxscaffold_7G00216290
rosa_rugosa	Rorug02G0377400
rosa_samantha	Rh2AG100700 Rh2AG430500 Rh2BG138700 Rh2BG439500 Rh2CG416200 Rh2DG449500 Rh4CG196100 Rh5DG216000 Rh6AG145200 Rh6AG372600 Rh6AG422200 Rh6DG373500
rosa_wichuraiana	Rw2G035160 Rw5G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	253
AcoI	YGGCCR	1 cut(s)	5
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgsI	TTSAA	1 cut(s)	53
AjnI	CCWGG	1 cut(s)	238
AoxI	GGCC	1 cut(s)	5
ApeKI	GCWGC	1 cut(s)	226
AspS9I	GGNCC	1 cut(s)	179
AsuC2I	CCSGG	1 cut(s)	90
AvaII	GGWCC	1 cut(s)	179
AxyI	CCTNAGG	1 cut(s)	170
BalI	TGGCCA	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	270
BauI	CACGAG	1 cut(s)	77
BbvI	GCAGC	1 cut(s)	213
BccI	CCATC	1 cut(s)	16
BciT130I	CCWGG	1 cut(s)	240
BcnI	CCSGG	1 cut(s)	90
BfaI	CTAG	1 cut(s)	122
BisI	GCNGC	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	228
Bme1390I	CCNGG	2 cut(s)	90, 240
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	71
BmrFI	CCNGG	2 cut(s)	90, 240
BpuMI	CCSGG	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	27, 238
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse21I	CCTNAGG	1 cut(s)	170
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	2 cut(s)	27, 238
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseXI	GCAGC	1 cut(s)	213
BshFI	GGCC	1 cut(s)	7
BsiSI	CCGG	1 cut(s)	89
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	1 cut(s)	7
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	2 cut(s)	15, 118
BspACI	CCGC	1 cut(s)	253
BspANI	GGCC	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	71
BssECI	CCNNGG	2 cut(s)	27, 238
BssMI	GATC	2 cut(s)	15, 118
BssSI	CACGAG	1 cut(s)	77
BssT1I	CCWWGG	1 cut(s)	27
Bst2BI	CACGAG	1 cut(s)	77
Bst2UI	CCWGG	1 cut(s)	240
Bst6I	CTCTTC	1 cut(s)	291
BstC8I	GCNNGC	2 cut(s)	166, 280
BstDEI	CTNAG	1 cut(s)	170
BstKTI	GATC	2 cut(s)	18, 121
BstMBI	GATC	2 cut(s)	15, 118
BstNI	CCWGG	1 cut(s)	240
BstNSI	RCATGY	1 cut(s)	282
BstSCI	CCNGG	2 cut(s)	88, 238
BstV1I	GCAGC	1 cut(s)	213
Bsu36I	CCTNAGG	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	7
BtsIMutI	CAGTG	1 cut(s)	112
Cac8I	GCNNGC	2 cut(s)	166, 280
Cfr13I	GGNCC	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	2 cut(s)	230, 279
CviJI	RGCY	6 cut(s)	7, 26, 82, 157, 226, 268
CviKI_1	RGCY	6 cut(s)	7, 26, 82, 157, 226, 268
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	1 cut(s)	170
DpnI	GATC	2 cut(s)	17, 120
DpnII	GATC	2 cut(s)	15, 118
EaeI	YGGCCR	1 cut(s)	5
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	179
Eco81I	CCTNAGG	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	2 cut(s)	233, 282
FalI	AAGNNNNNCTT	2 cut(s)	24, 56
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	2 cut(s)	229, 278
FauNDI	CATATG	1 cut(s)	205
Fnu4HI	GCNGC	1 cut(s)	227
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	1 cut(s)	227
FspBI	CTAG	1 cut(s)	122
GluI	GCNGC	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	7
HapII	CCGG	1 cut(s)	89
Hin1II	CATG	2 cut(s)	233, 282
HinfI	GANTC	2 cut(s)	49, 313
HpaII	CCGG	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	2 cut(s)	15, 20
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	2 cut(s)	26, 83
HpyCH4V	TGCA	2 cut(s)	229, 282
HpyF3I	CTNAG	1 cut(s)	170
Hsp92II	CATG	2 cut(s)	233, 282
Kzo9I	GATC	2 cut(s)	15, 118
LpnPI	CCDG	3 cut(s)	102, 225, 252
Lsp1109I	GCAGC	1 cut(s)	213
MaeI	CTAG	1 cut(s)	122
MalI	GATC	2 cut(s)	17, 120
MboI	GATC	2 cut(s)	15, 118
MboII	GAAGA	2 cut(s)	123, 278
MhlI	GDGCHC	1 cut(s)	270
MlsI	TGGCCA	1 cut(s)	7
MluCI	AATT	1 cut(s)	298
MluNI	TGGCCA	1 cut(s)	7
MnlI	CCTC	2 cut(s)	29, 93
Mox20I	TGGCCA	1 cut(s)	7
MscI	TGGCCA	1 cut(s)	7
MseI	TTAA	2 cut(s)	273, 319
Msp20I	TGGCCA	1 cut(s)	7
MspI	CCGG	1 cut(s)	89
MspR9I	CCNGG	2 cut(s)	90, 240
MvaI	CCWGG	1 cut(s)	240
NciI	CCSGG	1 cut(s)	90
NdeI	CATATG	1 cut(s)	205
NdeII	GATC	2 cut(s)	15, 118
NlaIII	CATG	2 cut(s)	233, 282
NlaIV	GGNNCC	1 cut(s)	71
NspI	RCATGY	1 cut(s)	282
PaeI	GCATGC	1 cut(s)	282
PfeI	GAWTC	2 cut(s)	49, 313
PkrI	GCNGC	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	71
PspPI	GGNCC	1 cut(s)	179
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SaqAI	TTAA	2 cut(s)	273, 319
SatI	GCNGC	1 cut(s)	227
Sau3AI	GATC	2 cut(s)	15, 118
Sau96I	GGNCC	1 cut(s)	179
ScrFI	CCNGG	2 cut(s)	90, 240
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	2 cut(s)	59, 75
SinI	GGWCC	1 cut(s)	179
SphI	GCATGC	1 cut(s)	282
Sse9I	AATT	1 cut(s)	298
SsiI	CCGC	1 cut(s)	253
SspMI	CTAG	1 cut(s)	122
StyD4I	CCNGG	2 cut(s)	88, 238
StyI	CCWWGG	1 cut(s)	27
TasI	AATT	1 cut(s)	298
TfiI	GAWTC	2 cut(s)	49, 313
Tru1I	TTAA	2 cut(s)	273, 319
Tru9I	TTAA	2 cut(s)	273, 319
TscAI	CASTG	1 cut(s)	112
TseI	GCWGC	1 cut(s)	226
TspDTI	ATGAA	2 cut(s)	121, 175
TspRI	CASTG	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	179
XceI	RCATGY	1 cut(s)	282
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.