Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028483.1

Orthogroup ID

OG0001950

Physical Location & Seq

Genomic Coordinates Reverse (-)

12016 .. 12379

Gene Structure 364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028483.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

atggaaaccaactctgtttacaagttgtgcttgttcttgggattggtttggttcttggggtttcatcagctggtccagtgcactgtgacctatgataggaaggccattgtgattaatgggcagaggagaatcctcatgtctggttcaatacactaccccagaagcactcctgagatgtgggaggatctgatacagaaggcaaaagatggaggtcttttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

73

Amino Acids

8.43

Weight (kDa)

8.71

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13750
fragaria_vesca	FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260
malus_domestica	MD03G1276100.v1.1 MD05G1210900.v1.1 MD09G1193900.v1.1 MD11G1104200.v1.1 MD11G1105200.v1.1 MD15G1317000.v1.1 MD16G1228200.v1.1
prunus_persica	Prupe.3G050200_v2.0.a1
pyrus_communis	pycom09g11040 pycom111g03560 pycom15g12320
rosa_chinensis	RchiOBHm_Chr0c25g0500881 RchiOBHm_Chr1g0331081 RchiOBHm_Chr2g0142961 RchiOBHm_Chr6g0257481 RchiOBHm_Chr6g0266311
rosa_laevigata	RLG00000020004
rosa_multiflora	Rmu_sc0006428.1_g000002 Rmu_sc0008528.1_g000001 Rmu_sc0028483.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030970 Rroxscaffold_2G00102180 Rroxscaffold_7G00183160 Rroxscaffold_7G00216290
rosa_rugosa	Rorug02G0377400
rosa_samantha	Rh2AG100700 Rh2AG430500 Rh2BG138700 Rh2BG439500 Rh2CG416200 Rh2DG449500 Rh4CG196100 Rh5DG216000 Rh6AG145200 Rh6AG372600 Rh6AG422200 Rh6DG373500
rosa_wichuraiana	Rw2G035160 Rw5G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	192
AfiI	CCNNNNNNNGG	1 cut(s)	96
AgsI	TTSAA	1 cut(s)	147
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw21I	GWGCWC	1 cut(s)	83
Alw44I	GTGCAC	1 cut(s)	79
AlwI	GGATC	1 cut(s)	192
AoxI	GGCC	1 cut(s)	102
ApaLI	GTGCAC	1 cut(s)	79
AseI	ATTAAT	1 cut(s)	114
AspS9I	GGNCC	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	73
BaeGI	GKGCMC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	83
BccI	CCATC	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
Bse1I	ACTGG	1 cut(s)	76
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	76
BseRI	GAGGAG	1 cut(s)	139
BseSI	GKGCMC	1 cut(s)	83
BshFI	GGCC	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	96
BsnI	GGCC	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	1 cut(s)	184
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	1 cut(s)	163
BspPI	GGATC	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	76
BssMI	GATC	1 cut(s)	184
Bst4CI	ACNGT	1 cut(s)	85
BstDEI	CTNAG	1 cut(s)	171
BstENI	CCTNNNNNAGG	1 cut(s)	94
BstKTI	GATC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	184
BstSLI	GKGCMC	1 cut(s)	83
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	104
BtsIMutI	CAGTG	2 cut(s)	81, 83
Cfr13I	GGNCC	1 cut(s)	73
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	2 cut(s)	70, 104
CviKI_1	RGCY	2 cut(s)	70, 104
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	73
EcoNI	CCTNNNNNAGG	1 cut(s)	94
FaeI	CATG	1 cut(s)	139
FaiI	YATR	2 cut(s)	93, 137
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FatI	CATG	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	104
Hin1II	CATG	1 cut(s)	139
HinfI	GANTC	1 cut(s)	129
Hpy166II	GTNNAC	2 cut(s)	19, 81
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	1 cut(s)	170
Hpy8I	GTNNAC	2 cut(s)	19, 81
HpyAV	CCTTC	2 cut(s)	94, 190
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4V	TGCA	1 cut(s)	81
HpyF3I	CTNAG	1 cut(s)	171
Hsp92II	CATG	1 cut(s)	139
Kzo9I	GATC	1 cut(s)	184
LpnPI	CCDG	5 cut(s)	56, 89, 126, 172, 183
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	83
MnlI	CCTC	4 cut(s)	117, 143, 175, 203
MseI	TTAA	1 cut(s)	114
MspA1I	CMGCKG	1 cut(s)	70
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	1 cut(s)	139
NmuCI	GTSAC	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	129
PshBI	ATTAAT	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	184
PvuII	CAGCTG	1 cut(s)	70
SaqAI	TTAA	1 cut(s)	114
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	1 cut(s)	73
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	3 cut(s)	72, 92, 214
SinI	GGWCC	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	85
TfiI	GAWTC	1 cut(s)	129
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	2 cut(s)	83, 88
TseFI	GTSAC	1 cut(s)	85
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	1 cut(s)	53
TspRI	CASTG	2 cut(s)	83, 88
VneI	GTGCAC	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	73
VspI	ATTAAT	1 cut(s)	114
XagI	CCTNNNNNAGG	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.