Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001950

Physical Location & Seq

Genomic Coordinates Forward (+)

61534823 .. 61537754

Gene Structure 2932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG422200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGAAACTCACTCGGTTTCCAAGCTCTTAGCTTTGTACTTGGTGGCCGCCTTGTTTGTGGGTTCTGAGCTGATCCAATGCACCACTGTGAGCTATGACAAGAAAGCCATTCTCATCAATGGCCGGAGAAGACTACTCATCTCCGGCTCAATTCACTACCCCAGAAGCACCCCTGACGTGGGAGTCCCAACTTCACGGGTGCAGATGACCCCAACCCACAATCATTTGCTTTATTGGGAGACTTATGGTGAAGATCTTTCCTCTCTACATGATAGGTCGAGCATATCAACTATTGGACTTCTAGAGCAGATAAATGTCACTAGAGATACCAGTGACTATCTGTGGTACATGACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

119

Amino Acids

13.49

Weight (kDa)

6.96

Isoelectric Point (pI)

46.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13750
fragaria_vesca	FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260
malus_domestica	MD03G1276100.v1.1 MD05G1210900.v1.1 MD09G1193900.v1.1 MD11G1104200.v1.1 MD11G1105200.v1.1 MD15G1317000.v1.1 MD16G1228200.v1.1
prunus_persica	Prupe.3G050200_v2.0.a1
pyrus_communis	pycom09g11040 pycom111g03560 pycom15g12320
rosa_chinensis	RchiOBHm_Chr0c25g0500881 RchiOBHm_Chr1g0331081 RchiOBHm_Chr2g0142961 RchiOBHm_Chr6g0257481 RchiOBHm_Chr6g0266311
rosa_laevigata	RLG00000020004
rosa_multiflora	Rmu_sc0006428.1_g000002 Rmu_sc0008528.1_g000001 Rmu_sc0028483.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030970 Rroxscaffold_2G00102180 Rroxscaffold_7G00183160 Rroxscaffold_7G00216290
rosa_rugosa	Rorug02G0377400
rosa_samantha	Rh2AG100700 Rh2AG430500 Rh2BG138700 Rh2BG439500 Rh2CG416200 Rh2DG449500 Rh4CG196100 Rh5DG216000 Rh6AG145200 Rh6AG372600 Rh6AG422200 Rh6DG373500
rosa_wichuraiana	Rw2G035160 Rw5G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	182
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	1 cut(s)	67
AcoI	YGGCCR	2 cut(s)	45, 121
AfaI	GTAC	2 cut(s)	38, 347
AfiI	CCNNNNNNNGG	2 cut(s)	178, 179
AjiI	CACGTC	1 cut(s)	178
AleI	CACNNNNGTG	1 cut(s)	86
AluBI	AGCT	4 cut(s)	25, 32, 70, 93
AluI	AGCT	4 cut(s)	25, 32, 70, 93
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	1 cut(s)	67
AoxI	GGCC	2 cut(s)	45, 121
AsuHPI	GGTGA	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	2 cut(s)	302, 321
BglII	AGATCT	1 cut(s)	253
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
BmgBI	CACGTC	1 cut(s)	178
BpiI	GAAGAC	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 179
Bse1I	ACTGG	1 cut(s)	330
BseLI	CCNNNNNNNGG	2 cut(s)	178, 179
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	330
BsgI	GTGCAG	1 cut(s)	221
BshFI	GGCC	2 cut(s)	47, 123
BsiSI	CCGG	2 cut(s)	124, 144
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	2 cut(s)	178, 179
BsmAI	GTCTC	1 cut(s)	233
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	2 cut(s)	47, 123
Bsp143I	GATC	2 cut(s)	72, 253
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	2 cut(s)	47, 123
BspCNI	CTCAG	1 cut(s)	58
BspPI	GGATC	1 cut(s)	67
BsrI	ACTGG	1 cut(s)	330
BssMI	GATC	2 cut(s)	72, 253
Bst4CI	ACNGT	1 cut(s)	88
BstDEI	CTNAG	2 cut(s)	28, 66
BstKTI	GATC	2 cut(s)	75, 256
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	2 cut(s)	72, 253
BstV2I	GAAGAC	1 cut(s)	136
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BsuRI	GGCC	2 cut(s)	47, 123
BtrI	CACGTC	1 cut(s)	178
BtsIMutI	CAGTG	2 cut(s)	84, 337
Csp6I	GTAC	2 cut(s)	37, 346
CviAII	CATG	2 cut(s)	269, 349
CviJI	RGCY	8 cut(s)	25, 32, 47, 70, 93, 107, 123, 147
CviKI_1	RGCY	8 cut(s)	25, 32, 47, 70, 93, 107, 123, 147
CviQI	GTAC	2 cut(s)	37, 346
DdeI	CTNAG	2 cut(s)	28, 66
DpnI	GATC	2 cut(s)	74, 255
DpnII	GATC	2 cut(s)	72, 253
DrdI	GACNNNNNNGTC	1 cut(s)	182
DseDI	GACNNNNNNGTC	1 cut(s)	182
EaeI	YGGCCR	2 cut(s)	45, 121
FaeI	CATG	2 cut(s)	272, 352
FaiI	YATR	5 cut(s)	96, 246, 270, 284, 350
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	2 cut(s)	268, 348
Fnu4HI	GCNGC	1 cut(s)	48
Fsp4HI	GCNGC	1 cut(s)	48
FspBI	CTAG	2 cut(s)	302, 321
GluI	GCNGC	1 cut(s)	48
HaeIII	GGCC	2 cut(s)	47, 123
HapII	CCGG	2 cut(s)	124, 144
Hin1II	CATG	2 cut(s)	272, 352
HinfI	GANTC	1 cut(s)	183
HpaII	CCGG	2 cut(s)	124, 144
HphI	GGTGA	1 cut(s)	260
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	1 cut(s)	302
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	2 cut(s)	81, 202
HpyF3I	CTNAG	2 cut(s)	28, 66
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	2 cut(s)	272, 352
Kzo9I	GATC	2 cut(s)	72, 253
LpnPI	CCDG	5 cut(s)	137, 157, 175, 186, 343
MaeI	CTAG	2 cut(s)	302, 321
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	2 cut(s)	316, 332
MalI	GATC	2 cut(s)	74, 255
MboI	GATC	2 cut(s)	72, 253
MboII	GAAGA	2 cut(s)	141, 263
MflI	RGATCY	1 cut(s)	253
MluCI	AATT	1 cut(s)	150
MlyI	GAGTC	1 cut(s)	192
MnlI	CCTC	1 cut(s)	271
MslI	CAYNNNNRTG	1 cut(s)	86
MspI	CCGG	2 cut(s)	124, 144
NdeII	GATC	2 cut(s)	72, 253
NlaIII	CATG	2 cut(s)	272, 352
NmuCI	GTSAC	2 cut(s)	316, 332
OliI	CACNNNNGTG	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	49
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
PsuI	RGATCY	1 cut(s)	253
RsaI	GTAC	2 cut(s)	38, 347
RsaNI	GTAC	2 cut(s)	37, 346
RseI	CAYNNNNRTG	1 cut(s)	86
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	2 cut(s)	72, 253
SchI	GAGTC	1 cut(s)	192
SetI	ASST	6 cut(s)	27, 34, 72, 95, 180, 278
SmiMI	CAYNNNNRTG	1 cut(s)	86
Sse9I	AATT	1 cut(s)	150
SsiI	CCGC	1 cut(s)	48
SspMI	CTAG	2 cut(s)	302, 321
TaaI	ACNGT	1 cut(s)	88
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	1 cut(s)	278
TasI	AATT	1 cut(s)	150
TatI	WGTACW	1 cut(s)	36
TauI	GCSGC	1 cut(s)	50
TscAI	CASTG	2 cut(s)	91, 337
TseFI	GTSAC	2 cut(s)	316, 332
Tsp45I	GTSAC	2 cut(s)	316, 332
TspRI	CASTG	2 cut(s)	91, 337
XbaI	TCTAGA	1 cut(s)	301
XspI	CTAG	2 cut(s)	302, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.