Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001950

Physical Location & Seq

Genomic Coordinates Forward (+)

56835476 .. 56839849

Gene Structure 4374 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG373500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAAGATGGTGTGGTATATTCTGTGTGGTTTTGCATTGTTGTTTATGAACCTGGAGACCTCTCTCGCCGGCGGCAGCAACAACGTCACGTACGATGGCCGGTCTCTGATAATCGACGGTCAGCATAAGATTCTCTTCTCCGGTTCCATTCACTACCCCAGAAGCACTCCTCAGATGTGGCCATCTCTGATAGCCAAAGCCAAAGAAGGGGGAATAGATGTGATACAAACATACGTGTTTTGGAACCTTCATGAACCCCAAAAAGGACAGTTTGTTTTCCATGGAAGACGTGACATAGTAGCCTTTATAAAGGAAGTCCACAGACAAGGCCTGTATGTGTGCCTTAGAATTGGACCCTTCATTCAGAGTGAATGGTCTTATGGTGGTTTTCCAGTTTGGTTAAGGAACATTCCGGGCATTGTTTTCCGGTCTGATAATGAACCGTATAAGGCTGAAATGCAGAGGTTTACAGCAAAAATAGTAGACCTAATGAAATCAAATGGACTGTACGCTTCACAAGGCGGACCGATTATATTGTCACAGATTGAGAACGAGTACCAAAATGTGGAAGCGGCGTTTCATGAAAAGGGACCTCCTTATGTTCTTTGGGCTGCATCCATGGCGGAGGGCCTTCAAACTGGTGTGCCCTGGGTTATGTGCAAGCAAAATGATGCTCCCGGCGCTGTGATCAATGCATGTAATGGGTTGAAGTGTGGAGAAACCTTTGCTGGCCCAAATGCCCCTAATAAGCCAGCAATTTGGACAGAGGACTGGACAAGCCAGTCGGGTTGTATGGAGAGAACTTACAAATCCATACAGACACAAGTAAAGTTCAATGGAACAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BetaGal_dom4_5 Gal_Lectin Glyco_hydro_35

Protein Analysis

282

Amino Acids

31.63

Weight (kDa)

7.62

Isoelectric Point (pI)

45.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	35 - 261	2.2e-83	Glycosyl hydrolases family 35
Glyco_hydro_42	PF02449	58 - 191	6e-06	Beta-galactosidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13750
fragaria_vesca	FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260
malus_domestica	MD03G1276100.v1.1 MD05G1210900.v1.1 MD09G1193900.v1.1 MD11G1104200.v1.1 MD11G1105200.v1.1 MD15G1317000.v1.1 MD16G1228200.v1.1
prunus_persica	Prupe.3G050200_v2.0.a1
pyrus_communis	pycom09g11040 pycom111g03560 pycom15g12320
rosa_chinensis	RchiOBHm_Chr0c25g0500881 RchiOBHm_Chr1g0331081 RchiOBHm_Chr2g0142961 RchiOBHm_Chr6g0257481 RchiOBHm_Chr6g0266311
rosa_laevigata	RLG00000020004
rosa_multiflora	Rmu_sc0006428.1_g000002 Rmu_sc0008528.1_g000001 Rmu_sc0028483.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030970 Rroxscaffold_2G00102180 Rroxscaffold_7G00183160 Rroxscaffold_7G00216290
rosa_rugosa	Rorug02G0377400
rosa_samantha	Rh2AG100700 Rh2AG430500 Rh2BG138700 Rh2BG439500 Rh2CG416200 Rh2DG449500 Rh4CG196100 Rh5DG216000 Rh6AG145200 Rh6AG372600 Rh6AG422200 Rh6DG373500
rosa_wichuraiana	Rw2G035160 Rw5G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	308
AasI	GACNNNNNNGTC	1 cut(s)	781
AccB7I	CCANNNNNTGG	1 cut(s)	565
AccI	GTMKAC	1 cut(s)	483
AciI	CCGC	4 cut(s)	72, 522, 572, 623
AcoI	YGGCCR	2 cut(s)	97, 179
AfaI	GTAC	3 cut(s)	92, 509, 557
AfiI	CCNNNNNNNGG	3 cut(s)	207, 263, 565
AflIII	ACRYGT	1 cut(s)	234
AgsI	TTSAA	3 cut(s)	635, 709, 835
AjiI	CACGTC	1 cut(s)	290
AjnI	CCWGG	2 cut(s)	51, 647
Alw26I	GTCTC	2 cut(s)	50, 108
AoxI	GGCC	5 cut(s)	97, 179, 328, 628, 730
ApeKI	GCWGC	2 cut(s)	75, 611
AspLEI	GCGC	1 cut(s)	683
AspS9I	GGNCC	5 cut(s)	353, 524, 590, 628, 731
AsuC2I	CCSGG	2 cut(s)	414, 678
AvaII	GGWCC	3 cut(s)	353, 524, 590
BaeGI	GKGCMC	1 cut(s)	648
BalI	TGGCCA	1 cut(s)	181
BbsI	GAAGAC	1 cut(s)	292
BbvI	GCAGC	2 cut(s)	87, 598
BccI	CCATC	2 cut(s)	89, 190
BciT130I	CCWGG	2 cut(s)	53, 649
BclI	TGATCA	1 cut(s)	687
BcnI	CCSGG	2 cut(s)	414, 678
BcoDI	GTCTC	2 cut(s)	50, 108
BfoI	RGCGCY	1 cut(s)	684
BisI	GCNGC	4 cut(s)	73, 76, 573, 612
BlsI	GCNGC	4 cut(s)	74, 77, 574, 613
Bme1390I	CCNGG	4 cut(s)	53, 414, 649, 678
Bme18I	GGWCC	3 cut(s)	353, 524, 590
BmgBI	CACGTC	1 cut(s)	290
BmgT120I	GGNCC	5 cut(s)	353, 524, 590, 628, 731
BmiI	GGNNCC	4 cut(s)	145, 245, 355, 591
BmrFI	CCNGG	4 cut(s)	53, 414, 649, 678
BmsI	GCATC	2 cut(s)	623, 661
BpiI	GAAGAC	1 cut(s)	292
BpmI	CTGGAG	1 cut(s)	74
BpuMI	CCSGG	2 cut(s)	414, 678
BsaAI	YACGTR	2 cut(s)	90, 235
BsaI	GGTCTC	2 cut(s)	50, 108
BsaJI	CCNNGG	4 cut(s)	280, 618, 647, 648
BsaWI	WCCGGW	2 cut(s)	140, 426
Bsc4I	CCNNNNNNNGG	3 cut(s)	207, 263, 565
Bse118I	RCCGGY	2 cut(s)	68, 99
Bse1I	ACTGG	4 cut(s)	392, 643, 776, 781
BseBI	CCWGG	2 cut(s)	53, 649
BseDI	CCNNGG	4 cut(s)	280, 618, 647, 648
BseGI	GGATG	1 cut(s)	614
BseLI	CCNNNNNNNGG	3 cut(s)	207, 263, 565
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	4 cut(s)	392, 643, 776, 781
BseRI	GAGGAG	1 cut(s)	159
BseSI	GKGCMC	1 cut(s)	648
BseXI	GCAGC	2 cut(s)	87, 598
BshFI	GGCC	5 cut(s)	99, 181, 330, 630, 732
BsiSI	CCGG	6 cut(s)	69, 100, 141, 413, 427, 678
BsiWI	CGTACG	1 cut(s)	90
BslFI	GGGAC	1 cut(s)	603
BslI	CCNNNNNNNGG	3 cut(s)	207, 263, 565
BsmAI	GTCTC	2 cut(s)	50, 108
BsmFI	GGGAC	1 cut(s)	603
BsnI	GGCC	5 cut(s)	99, 181, 330, 630, 732
Bso31I	GGTCTC	2 cut(s)	50, 108
Bsp1286I	GDGCHC	1 cut(s)	648
Bsp143I	GATC	1 cut(s)	687
Bsp19I	CCATGG	2 cut(s)	280, 618
BspACI	CCGC	4 cut(s)	72, 522, 572, 623
BspANI	GGCC	5 cut(s)	99, 181, 330, 630, 732
BspCNI	CTCAG	1 cut(s)	184
BspHI	TCATGA	2 cut(s)	250, 580
BspLI	GGNNCC	4 cut(s)	145, 245, 355, 591
BspTNI	GGTCTC	2 cut(s)	50, 108
BsrFI	RCCGGY	2 cut(s)	68, 99
BsrI	ACTGG	4 cut(s)	392, 643, 776, 781
BssAI	RCCGGY	2 cut(s)	68, 99
BssECI	CCNNGG	4 cut(s)	280, 618, 647, 648
BssMI	GATC	1 cut(s)	687
BssT1I	CCWWGG	2 cut(s)	280, 618
Bst2UI	CCWGG	2 cut(s)	53, 649
Bst4CI	ACNGT	4 cut(s)	119, 270, 444, 507
Bst6I	CTCTTC	1 cut(s)	140
BstBAI	YACGTR	2 cut(s)	90, 235
BstC8I	GCNNGC	4 cut(s)	70, 662, 730, 753
BstDEI	CTNAG	2 cut(s)	171, 344
BstDSI	CCRYGG	2 cut(s)	280, 618
BstF5I	GGATG	1 cut(s)	614
BstH2I	RGCGCY	1 cut(s)	684
BstHHI	GCGC	1 cut(s)	683
BstKTI	GATC	1 cut(s)	690
BstMAI	GTCTC	2 cut(s)	50, 108
BstMBI	GATC	1 cut(s)	687
BstMWI	GCNNNNNNNGC	2 cut(s)	620, 680
BstNI	CCWGG	2 cut(s)	53, 649
BstNSI	RCATGY	1 cut(s)	699
BstSCI	CCNGG	4 cut(s)	51, 412, 647, 676
BstSLI	GKGCMC	1 cut(s)	648
BstV1I	GCAGC	2 cut(s)	87, 598
BstV2I	GAAGAC	1 cut(s)	292
BstXI	CCANNNNNNTGG	1 cut(s)	759
BsuRI	GGCC	5 cut(s)	99, 181, 330, 630, 732
BtgI	CCRYGG	2 cut(s)	280, 618
BtrI	CACGTC	1 cut(s)	290
BtsCI	GGATG	1 cut(s)	614
Cac8I	GCNNGC	4 cut(s)	70, 662, 730, 753
CciI	TCATGA	2 cut(s)	250, 580
CfoI	GCGC	1 cut(s)	683
Cfr10I	RCCGGY	2 cut(s)	68, 99
Cfr13I	GGNCC	5 cut(s)	353, 524, 590, 628, 731
CpoI	CGGWCCG	1 cut(s)	524
Csp6I	GTAC	3 cut(s)	91, 508, 556
CspI	CGGWCCG	1 cut(s)	524
CviAII	CATG	5 cut(s)	251, 281, 581, 619, 696
CviQI	GTAC	3 cut(s)	91, 508, 556
DdeI	CTNAG	2 cut(s)	171, 344
DpnI	GATC	1 cut(s)	689
DpnII	GATC	1 cut(s)	687
DrdI	GACNNNNNNGTC	1 cut(s)	781
DseDI	GACNNNNNNGTC	1 cut(s)	781
EaeI	YGGCCR	2 cut(s)	97, 179
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
EciI	GGCGGA	2 cut(s)	537, 638
Eco130I	CCWWGG	2 cut(s)	280, 618
Eco147I	AGGCCT	1 cut(s)	330
Eco31I	GGTCTC	2 cut(s)	50, 108
Eco47I	GGWCC	3 cut(s)	353, 524, 590
EcoO109I	RGGNCCY	2 cut(s)	590, 628
EcoRII	CCWGG	2 cut(s)	51, 647
EcoT14I	CCWWGG	2 cut(s)	280, 618
EcoT22I	ATGCAT	1 cut(s)	697
ErhI	CCWWGG	2 cut(s)	280, 618
FaeI	CATG	5 cut(s)	254, 284, 584, 622, 699
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FaqI	GGGAC	1 cut(s)	603
FatI	CATG	5 cut(s)	250, 280, 580, 618, 695
FbaI	TGATCA	1 cut(s)	687
FblI	GTMKAC	1 cut(s)	483
Fnu4HI	GCNGC	4 cut(s)	73, 76, 573, 612
FokI	GGATG	1 cut(s)	601
Fsp4HI	GCNGC	4 cut(s)	73, 76, 573, 612
GlaI	GCGC	1 cut(s)	682
GluI	GCNGC	4 cut(s)	73, 76, 573, 612
GsuI	CTGGAG	1 cut(s)	74
HaeII	RGCGCY	1 cut(s)	684
HaeIII	GGCC	5 cut(s)	99, 181, 330, 630, 732
HapII	CCGG	6 cut(s)	69, 100, 141, 413, 427, 678
HhaI	GCGC	1 cut(s)	683
Hin1II	CATG	5 cut(s)	254, 284, 584, 622, 699
Hin6I	GCGC	1 cut(s)	681
HinP1I	GCGC	1 cut(s)	681
HinfI	GANTC	1 cut(s)	130
HpaII	CCGG	6 cut(s)	69, 100, 141, 413, 427, 678
Hpy166II	GTNNAC	3 cut(s)	319, 468, 484
Hpy188I	TCNGA	5 cut(s)	108, 174, 189, 366, 433
Hpy188III	TCNNGA	2 cut(s)	251, 581
Hpy8I	GTNNAC	3 cut(s)	319, 468, 484
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	4 cut(s)	200, 257, 367, 641
HpyCH4III	ACNGT	4 cut(s)	119, 270, 444, 507
HpyCH4IV	ACGT	4 cut(s)	84, 89, 234, 289
HpyCH4V	TGCA	5 cut(s)	35, 460, 614, 660, 695
HpyF10VI	GCNNNNNNNGC	2 cut(s)	620, 680
HpyF3I	CTNAG	2 cut(s)	171, 344
HpySE526I	ACGT	4 cut(s)	84, 89, 234, 289
Hsp92II	CATG	5 cut(s)	254, 284, 584, 622, 699
HspAI	GCGC	1 cut(s)	681
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
Ksp22I	TGATCA	1 cut(s)	687
Kzo9I	GATC	1 cut(s)	687
LmnI	GCTCC	1 cut(s)	679
Lsp1109I	GCAGC	2 cut(s)	87, 598
LweI	GCATC	2 cut(s)	623, 661
MaeII	ACGT	4 cut(s)	84, 89, 234, 289
MaeIII	GTNAC	3 cut(s)	85, 290, 537
MalI	GATC	1 cut(s)	689
MboI	GATC	1 cut(s)	687
MboII	GAAGA	3 cut(s)	16, 127, 297
MhlI	GDGCHC	1 cut(s)	648
MlsI	TGGCCA	1 cut(s)	181
MluCI	AATT	2 cut(s)	348, 756
MluNI	TGGCCA	1 cut(s)	181
MnlI	CCTC	6 cut(s)	70, 180, 456, 603, 619, 760
Mox20I	TGGCCA	1 cut(s)	181
Mph1103I	ATGCAT	1 cut(s)	697
MreI	CGCCGGCG	1 cut(s)	68
MroNI	GCCGGC	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	181
MseI	TTAA	2 cut(s)	401, 847
Msp20I	TGGCCA	1 cut(s)	181
MspI	CCGG	6 cut(s)	69, 100, 141, 413, 427, 678
MspR9I	CCNGG	4 cut(s)	53, 414, 649, 678
MvaI	CCWGG	2 cut(s)	53, 649
MwoI	GCNNNNNNNGC	2 cut(s)	620, 680
NaeI	GCCGGC	1 cut(s)	70
NciI	CCSGG	2 cut(s)	414, 678
NcoI	CCATGG	2 cut(s)	280, 618
NdeII	GATC	1 cut(s)	687
NgoMIV	GCCGGC	1 cut(s)	68
NlaIII	CATG	5 cut(s)	254, 284, 584, 622, 699
NlaIV	GGNNCC	4 cut(s)	145, 245, 355, 591
NmuCI	GTSAC	3 cut(s)	85, 290, 537
NsiI	ATGCAT	1 cut(s)	697
NspI	RCATGY	1 cut(s)	699
PagI	TCATGA	2 cut(s)	250, 580
PasI	CCCWGGG	1 cut(s)	648
PceI	AGGCCT	1 cut(s)	330
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PdiI	GCCGGC	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	130
Pfl23II	CGTACG	1 cut(s)	90
PflMI	CCANNNNNTGG	1 cut(s)	565
PkrI	GCNGC	4 cut(s)	74, 77, 574, 613
Ppu21I	YACGTR	2 cut(s)	90, 235
PpuMI	RGGWCCY	1 cut(s)	590
PsiI	TTATAA	1 cut(s)	308
Psp5II	RGGWCCY	1 cut(s)	590
Psp6I	CCWGG	2 cut(s)	51, 647
PspGI	CCWGG	2 cut(s)	51, 647
PspLI	CGTACG	1 cut(s)	90
PspN4I	GGNNCC	4 cut(s)	145, 245, 355, 591
PspPI	GGNCC	5 cut(s)	353, 524, 590, 628, 731
PspPPI	RGGWCCY	1 cut(s)	590
RsaI	GTAC	3 cut(s)	92, 509, 557
RsaNI	GTAC	3 cut(s)	91, 508, 556
Rsr2I	CGGWCCG	1 cut(s)	524
RsrII	CGGWCCG	1 cut(s)	524
SaqAI	TTAA	2 cut(s)	401, 847
SatI	GCNGC	4 cut(s)	73, 76, 573, 612
Sau3AI	GATC	1 cut(s)	687
Sau96I	GGNCC	5 cut(s)	353, 524, 590, 628, 731
ScrFI	CCNGG	4 cut(s)	53, 414, 649, 678
SduI	GDGCHC	1 cut(s)	648
SfaNI	GCATC	2 cut(s)	623, 661
SgrAI	CRCCGGYG	1 cut(s)	68
SinI	GGWCC	3 cut(s)	353, 524, 590
Sse9I	AATT	2 cut(s)	348, 756
SseBI	AGGCCT	1 cut(s)	330
SsiI	CCGC	4 cut(s)	72, 522, 572, 623
StuI	AGGCCT	1 cut(s)	330
StyD4I	CCNGG	4 cut(s)	51, 412, 647, 676
StyI	CCWWGG	2 cut(s)	280, 618
TaaI	ACNGT	4 cut(s)	119, 270, 444, 507
TaiI	ACGT	4 cut(s)	87, 92, 237, 292
TaqI	TCGA	1 cut(s)	114
TaqII	GACCGA	1 cut(s)	541
TasI	AATT	2 cut(s)	348, 756
TauI	GCSGC	2 cut(s)	75, 575
TfiI	GAWTC	1 cut(s)	130
Tru1I	TTAA	2 cut(s)	401, 847
Tru9I	TTAA	2 cut(s)	401, 847
TseFI	GTSAC	3 cut(s)	85, 290, 537
TseI	GCWGC	2 cut(s)	75, 611
Tsp45I	GTSAC	3 cut(s)	85, 290, 537
TspDTI	ATGAA	9 cut(s)	17, 62, 239, 267, 349, 453, 506, 569, 597
Van91I	CCANNNNNTGG	1 cut(s)	565
VpaK11BI	GGWCC	3 cut(s)	353, 524, 590
XceI	RCATGY	1 cut(s)	699
XmiI	GTMKAC	1 cut(s)	483
Zsp2I	ATGCAT	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.