Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001584

Physical Location & Seq

Genomic Coordinates Forward (+)

13169044 .. 13171988

Gene Structure 2945 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1162300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGCTCATGAAGGAGTACCAAAACTTGAAATTCAAACAGCCTTATGAGCAGGCTATGAATTACTCCGCATTAATTCTACATGATCATACTTCTCCATGGATGGAAGAACTTGAAGCTCTTCCTCACCTTCAAGTTGAAGATCTTGCTAAGTTTGTTCCTCTGATGCTCTCGAGGGCCTTCTTAGAGTGTTATACAGCAGGAAACCTTGAAAGGAATGAAGCTGAGTCAATGATCCAACATATTGAAGATGTTTTATTTAAGGGCTCAAACCCGATTTCCCAACCTTTGTTCCCATCCCAGCATTTGACTAATAGAGTCGTGAAGCTTGAAAAGGGCAAGAACTACTTCTACCCTGTGGAAGGCCTTAATCCGAGTGACGAGAATTCTGCCCTTGTCCACTATATCCAGGTTCATCGGGATGATTTTATGCTGAATGTGAAACTTCAGCTGTTTGCTCTTATTGCAAAGCAACCTGCCTTCCACCAGCTTAGATCCGTTGAGCAACTTGGTTACATCACGGCCCTCGTGCAGAGGAATGATTTTGGTATCCGTGGGGTGCAGTTTATTATACAATCTACAGTGAAGGATCCATCACATATTGATTTGAGAGTGGAGGAATTCCTCAAGGGGTTCGAGACTAAACTTTATAAGATGCCAAGTGACGAATTCAAGAGCAATGTAAATGCTTTGATCGACATGAAGCTTGAGAAGCACAAGAACTTACGGGAAGAAGCTGGATTTTATTGGACGGAGATTTCTGATGGGACCCTCAAGTTTGATAGGAAAGAGTCTGAGATTGCAGCACTGAGGCAGCTTACGCAGCAAGAATTGATAGATTTTTTCAATGAGCATATAAAAGTTGGGGCACCTCAAAAGAGGTCATTAAGTGTACGAGTGTACGGGAACTCACATTCATCCGAGTACACTACGGATGGAAGTTCACCTGTGAAACCTTGCTATGTCAAAATCGACGATATATTCAGCTTCAGAAGGTCACAGCCTCTTTATGGTTCATTCAAGGGAAATCATGTGAAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

347

Amino Acids

40.1

Weight (kDa)

6.37

Isoelectric Point (pI)

49.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M16_C	PF05193	43 - 230	1.1e-11	Peptidase M16 inactive domain
PqqF-like_C_4	PF22456	150 - 249	4.4e-22	PQQ synthase PqqF-like, C-terminal lobe domain 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41790 AT3G57470 AT3G57470 AT3G57470 AT3G57470 AT3G57470 AT3G57470
fragaria_vesca	FvH4_6g23690 FvH4_6g23690 FvH4_6g23690 FvH4_6g23690 FvH4_6g23690
malus_domestica	MD09G1162300.v1.1 MD12G1073300.v1.1 MD14G1071400.v1.1
prunus_persica	Prupe.7G061600_v2.0.a1
pyrus_communis	pycom12g06310 pycom12g06320 pycom14g06090 pycom14g06100 pycom14g06120
rosa_chinensis	RchiOBHm_Chr3g0481841 RchiOBHm_Chr3g0482151 RchiOBHm_Chr3g0482171
rosa_laevigata	RLG00000023367 RLG00000023371
rosa_multiflora	Rmu_sc0000192.1_g000006 Rmu_sc0000192.1_g000021 Rmu_sc0001738.1_g000037 Rmu_sc0001738.1_g000040 Rmu_sc0007237.1_g000003
rosa_roxburghii	Rroxscaffold_6G00399680 Rroxscaffold_6G00400000 Rroxscaffold_6G00400030
rosa_rugosa	Rorug03G0195200 Rorug03G0195300 Rorug03G0195400 Rorug03G0195500
rosa_samantha	Rh3AG245000 Rh3AG246300 Rh3AG246900 Rh3BG281400 Rh3BG281500 Rh3CG277400 Rh3CG277500 Rh3DG273700 Rh3DG274100
rosa_wichuraiana	Rw3G021870 Rw3G022020 Rw3G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	648
Acc36I	ACCTGC	1 cut(s)	481
AccB1I	GGYRCC	1 cut(s)	865
AciI	CCGC	1 cut(s)	66
AclWI	GGATC	4 cut(s)	226, 486, 581, 594
AcsI	RAATTY	4 cut(s)	29, 382, 617, 665
AcuI	CTGAAG	2 cut(s)	428, 970
AfaI	GTAC	4 cut(s)	17, 891, 899, 923
AfiI	CCNNNNNNNGG	2 cut(s)	359, 1007
AjnI	CCWGG	1 cut(s)	405
AluBI	AGCT	9 cut(s)	116, 221, 325, 448, 487, 703, 734, 814, 984
AluI	AGCT	9 cut(s)	116, 221, 325, 448, 487, 703, 734, 814, 984
Alw26I	GTCTC	1 cut(s)	629
AlwI	GGATC	4 cut(s)	226, 486, 581, 594
Ama87I	CYCGRG	1 cut(s)	169
AoxI	GGCC	3 cut(s)	174, 361, 519
ApeKI	GCWGC	3 cut(s)	800, 811, 820
ApoI	RAATTY	4 cut(s)	29, 382, 617, 665
AseI	ATTAAT	1 cut(s)	71
Asp700I	GAANNNNTTC	2 cut(s)	117, 344
AspS9I	GGNCC	3 cut(s)	174, 520, 765
AsuHPI	GGTGA	2 cut(s)	116, 933
AvaI	CYCGRG	1 cut(s)	169
AvaII	GGWCC	1 cut(s)	765
BaeGI	GKGCMC	1 cut(s)	868
BamHI	GGATCC	1 cut(s)	586
BanI	GGYRCC	1 cut(s)	865
BanII	GRGCYC	1 cut(s)	266
BauI	CACGAG	1 cut(s)	524
BbvI	GCAGC	3 cut(s)	812, 823, 832
BccI	CCATC	5 cut(s)	94, 301, 598, 755, 926
BceAI	ACGGC	1 cut(s)	534
BcgI	CGANNNNNNTGC	2 cut(s)	368, 402
BciT130I	CCWGG	1 cut(s)	407
BciVI	GTATCC	1 cut(s)	557
BclI	TGATCA	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	629
BfmI	CTRYAG	1 cut(s)	576
BfuAI	ACCTGC	1 cut(s)	481
BfuI	GTATCC	1 cut(s)	557
BglII	AGATCT	1 cut(s)	139
BisI	GCNGC	3 cut(s)	801, 812, 821
BlsI	GCNGC	3 cut(s)	802, 813, 822
Bme1390I	CCNGG	1 cut(s)	407
Bme18I	GGWCC	1 cut(s)	765
BmeT110I	CYCGRG	1 cut(s)	169
BmgT120I	GGNCC	3 cut(s)	174, 520, 765
BmiI	GGNNCC	4 cut(s)	588, 766, 767, 867
BmrFI	CCNGG	1 cut(s)	407
BmsI	GCATC	2 cut(s)	153, 642
BpuEI	CTTGAG	3 cut(s)	608, 725, 755
BsaJI	CCNNGG	2 cut(s)	95, 550
Bsc4I	CCNNNNNNNGG	2 cut(s)	359, 1007
Bse3DI	GCAATG	1 cut(s)	682
BseBI	CCWGG	1 cut(s)	407
BseDI	CCNNGG	2 cut(s)	95, 550
BseGI	GGATG	5 cut(s)	105, 293, 424, 914, 937
BseLI	CCNNNNNNNGG	2 cut(s)	359, 1007
BseMI	GCAATG	1 cut(s)	682
BseMII	CTCAG	3 cut(s)	213, 783, 797
BseSI	GKGCMC	1 cut(s)	868
BseXI	GCAGC	3 cut(s)	812, 823, 832
BseYI	CCCAGC	1 cut(s)	297
BsgI	GTGCAG	2 cut(s)	548, 578
BshFI	GGCC	3 cut(s)	176, 363, 521
BshNI	GGYRCC	1 cut(s)	865
BsiHKCI	CYCGRG	1 cut(s)	169
BslFI	GGGAC	1 cut(s)	778
BslI	CCNNNNNNNGG	2 cut(s)	359, 1007
BsmAI	GTCTC	1 cut(s)	629
BsmFI	GGGAC	1 cut(s)	778
BsnI	GGCC	3 cut(s)	176, 363, 521
BsoBI	CYCGRG	1 cut(s)	169
Bsp1286I	GDGCHC	2 cut(s)	266, 868
Bsp143I	GATC	6 cut(s)	82, 139, 231, 491, 586, 690
Bsp19I	CCATGG	1 cut(s)	95
BspACI	CCGC	1 cut(s)	66
BspANI	GGCC	3 cut(s)	176, 363, 521
BspCNI	CTCAG	3 cut(s)	214, 784, 798
BspHI	TCATGA	1 cut(s)	6
BspLI	GGNNCC	4 cut(s)	588, 766, 767, 867
BspMI	ACCTGC	1 cut(s)	481
BspPI	GGATC	4 cut(s)	226, 486, 581, 594
BspQI	GCTCTTC	1 cut(s)	123
BspT107I	GGYRCC	1 cut(s)	865
BsrDI	GCAATG	1 cut(s)	682
BssECI	CCNNGG	2 cut(s)	95, 550
BssMI	GATC	6 cut(s)	82, 139, 231, 491, 586, 690
BssSI	CACGAG	1 cut(s)	524
BssT1I	CCWWGG	1 cut(s)	95
Bst2BI	CACGAG	1 cut(s)	524
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	1 cut(s)	580
Bst6I	CTCTTC	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	6 cut(s)	147, 181, 222, 488, 792, 806
BstDSI	CCRYGG	2 cut(s)	95, 550
BstENI	CCTNNNNNAGG	1 cut(s)	357
BstF5I	GGATG	5 cut(s)	105, 293, 424, 914, 937
BstKTI	GATC	6 cut(s)	85, 142, 234, 494, 589, 693
BstMAI	GTCTC	1 cut(s)	629
BstMBI	GATC	6 cut(s)	82, 139, 231, 491, 586, 690
BstMWI	GCNNNNNNNGC	5 cut(s)	46, 461, 709, 817, 820
BstNI	CCWGG	1 cut(s)	407
BstSCI	CCNGG	1 cut(s)	405
BstSFI	CTRYAG	1 cut(s)	576
BstSLI	GKGCMC	1 cut(s)	868
BstV1I	GCAGC	3 cut(s)	812, 823, 832
BstX2I	RGATCY	3 cut(s)	139, 491, 586
BstYI	RGATCY	3 cut(s)	139, 491, 586
BsuI	GTATCC	1 cut(s)	557
BsuRI	GGCC	3 cut(s)	176, 363, 521
BtgI	CCRYGG	2 cut(s)	95, 550
BtsCI	GGATG	5 cut(s)	105, 293, 424, 914, 937
BtsIMutI	CAGTG	2 cut(s)	585, 803
BveI	ACCTGC	1 cut(s)	481
Cac8I	GCNNGC	1 cut(s)	51
CciI	TCATGA	1 cut(s)	6
Cfr13I	GGNCC	3 cut(s)	174, 520, 765
Csp6I	GTAC	4 cut(s)	16, 890, 898, 922
CviAII	CATG	5 cut(s)	7, 80, 96, 697, 1028
CviQI	GTAC	4 cut(s)	16, 890, 898, 922
DdeI	CTNAG	6 cut(s)	147, 181, 222, 488, 792, 806
DpnI	GATC	6 cut(s)	84, 141, 233, 493, 588, 692
DpnII	GATC	6 cut(s)	82, 139, 231, 491, 586, 690
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	95
Eco147I	AGGCCT	1 cut(s)	363
Eco24I	GRGCYC	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	765
Eco57I	CTGAAG	2 cut(s)	428, 970
Eco88I	CYCGRG	1 cut(s)	169
EcoNI	CCTNNNNNAGG	1 cut(s)	357
EcoO109I	RGGNCCY	2 cut(s)	174, 765
EcoRI	GAATTC	3 cut(s)	382, 617, 665
EcoRII	CCWGG	1 cut(s)	405
EcoT14I	CCWWGG	1 cut(s)	95
EcoT38I	GRGCYC	1 cut(s)	266
ErhI	CCWWGG	1 cut(s)	95
FaeI	CATG	5 cut(s)	10, 83, 99, 700, 1031
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FaqI	GGGAC	1 cut(s)	778
FatI	CATG	5 cut(s)	6, 79, 95, 696, 1027
FbaI	TGATCA	1 cut(s)	82
Fnu4HI	GCNGC	3 cut(s)	801, 812, 821
FokI	GGATG	5 cut(s)	112, 280, 431, 901, 944
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	3 cut(s)	801, 812, 821
GluI	GCNGC	3 cut(s)	801, 812, 821
GsaI	CCCAGC	1 cut(s)	301
HaeIII	GGCC	3 cut(s)	176, 363, 521
Hin1II	CATG	5 cut(s)	10, 83, 99, 700, 1031
HindIII	AAGCTT	2 cut(s)	323, 701
HinfI	GANTC	3 cut(s)	224, 315, 788
HphI	GGTGA	2 cut(s)	116, 933
Hpy166II	GTNNAC	5 cut(s)	397, 890, 898, 924, 941
Hpy188I	TCNGA	6 cut(s)	162, 372, 760, 793, 919, 989
Hpy188III	TCNNGA	6 cut(s)	7, 169, 319, 416, 634, 670
Hpy8I	GTNNAC	5 cut(s)	397, 890, 898, 924, 941
Hpy99I	CGWCG	1 cut(s)	974
HpyAV	CCTTC	7 cut(s)	4, 137, 187, 353, 487, 577, 984
HpyCH4III	ACNGT	1 cut(s)	580
HpyCH4V	TGCA	4 cut(s)	464, 529, 559, 800
HpyF10VI	GCNNNNNNNGC	5 cut(s)	46, 461, 709, 817, 820
HpyF3I	CTNAG	6 cut(s)	147, 181, 222, 488, 792, 806
Hsp92II	CATG	5 cut(s)	10, 83, 99, 700, 1031
KflI	GGGWCCC	1 cut(s)	765
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	6 cut(s)	82, 139, 231, 491, 586, 690
LguI	GCTCTTC	1 cut(s)	123
Lsp1109I	GCAGC	3 cut(s)	812, 823, 832
LweI	GCATC	2 cut(s)	153, 642
MaeIII	GTNAC	4 cut(s)	374, 509, 659, 993
MalI	GATC	6 cut(s)	84, 141, 233, 493, 588, 692
MboI	GATC	6 cut(s)	82, 139, 231, 491, 586, 690
MboII	GAAGA	5 cut(s)	110, 116, 149, 257, 740
MflI	RGATCY	3 cut(s)	139, 491, 586
MhlI	GDGCHC	2 cut(s)	266, 868
MluCI	AATT	8 cut(s)	29, 58, 72, 382, 617, 665, 827, 1034
MlyI	GAGTC	3 cut(s)	233, 324, 797
MmeI	TCCRAC	1 cut(s)	259
MroXI	GAANNNNTTC	2 cut(s)	117, 344
MseI	TTAA	4 cut(s)	71, 258, 366, 884
MslI	CAYNNNNRTG	1 cut(s)	417
MspA1I	CMGCKG	1 cut(s)	448
MspR9I	CCNGG	1 cut(s)	407
MvaI	CCWGG	1 cut(s)	407
MwoI	GCNNNNNNNGC	5 cut(s)	46, 461, 709, 817, 820
NcoI	CCATGG	1 cut(s)	95
NdeII	GATC	6 cut(s)	82, 139, 231, 491, 586, 690
NlaIII	CATG	5 cut(s)	10, 83, 99, 700, 1031
NlaIV	GGNNCC	4 cut(s)	588, 766, 767, 867
NmuCI	GTSAC	3 cut(s)	374, 659, 993
PaeR7I	CTCGAG	1 cut(s)	169
PagI	TCATGA	1 cut(s)	6
PceI	AGGCCT	1 cut(s)	363
PciSI	GCTCTTC	1 cut(s)	123
PdmI	GAANNNNTTC	2 cut(s)	117, 344
PkrI	GCNGC	3 cut(s)	802, 813, 822
PleI	GAGTC	3 cut(s)	232, 323, 796
PpsI	GAGTC	3 cut(s)	232, 323, 796
PpuMI	RGGWCCY	1 cut(s)	765
PshBI	ATTAAT	1 cut(s)	71
PsiI	TTATAA	1 cut(s)	648
Psp5II	RGGWCCY	1 cut(s)	765
Psp6I	CCWGG	1 cut(s)	405
PspFI	CCCAGC	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	405
PspN4I	GGNNCC	4 cut(s)	588, 766, 767, 867
PspPI	GGNCC	3 cut(s)	174, 520, 765
PspPPI	RGGWCCY	1 cut(s)	765
PsrI	GAACNNNNNNTAC	2 cut(s)	332, 364
PsuI	RGATCY	3 cut(s)	139, 491, 586
PvuII	CAGCTG	1 cut(s)	448
RsaI	GTAC	4 cut(s)	17, 891, 899, 923
RsaNI	GTAC	4 cut(s)	16, 890, 898, 922
RseI	CAYNNNNRTG	1 cut(s)	417
SapI	GCTCTTC	1 cut(s)	123
SaqAI	TTAA	4 cut(s)	71, 258, 366, 884
SatI	GCNGC	3 cut(s)	801, 812, 821
Sau3AI	GATC	6 cut(s)	82, 139, 231, 491, 586, 690
Sau96I	GGNCC	3 cut(s)	174, 520, 765
SchI	GAGTC	3 cut(s)	233, 324, 797
ScrFI	CCNGG	1 cut(s)	407
SduI	GDGCHC	2 cut(s)	266, 868
SfaNI	GCATC	2 cut(s)	153, 642
SfcI	CTRYAG	1 cut(s)	576
Sfr274I	CTCGAG	1 cut(s)	169
SinI	GGWCC	1 cut(s)	765
SlaI	CTCGAG	1 cut(s)	169
SmiMI	CAYNNNNRTG	1 cut(s)	417
SmlI	CTYRAG	4 cut(s)	169, 623, 704, 770
SmoI	CTYRAG	4 cut(s)	169, 623, 704, 770
Sse9I	AATT	8 cut(s)	29, 58, 72, 382, 617, 665, 827, 1034
SseBI	AGGCCT	1 cut(s)	363
SsiI	CCGC	1 cut(s)	66
StuI	AGGCCT	1 cut(s)	363
StyD4I	CCNGG	1 cut(s)	405
StyI	CCWWGG	1 cut(s)	95
TaaI	ACNGT	1 cut(s)	580
TaqI	TCGA	4 cut(s)	170, 633, 693, 969
TasI	AATT	8 cut(s)	29, 58, 72, 382, 617, 665, 827, 1034
TatI	WGTACW	1 cut(s)	921
Tru1I	TTAA	4 cut(s)	71, 258, 366, 884
Tru9I	TTAA	4 cut(s)	71, 258, 366, 884
TscAI	CASTG	2 cut(s)	585, 810
TseFI	GTSAC	3 cut(s)	374, 659, 993
TseI	GCWGC	3 cut(s)	800, 811, 820
Tsp45I	GTSAC	3 cut(s)	374, 659, 993
TspDTI	ATGAA	7 cut(s)	23, 71, 231, 401, 713, 903, 1002
TspGWI	ACGGA	4 cut(s)	484, 539, 764, 944
TspRI	CASTG	2 cut(s)	585, 810
VpaK11BI	GGWCC	1 cut(s)	765
VspI	ATTAAT	1 cut(s)	71
XagI	CCTNNNNNAGG	1 cut(s)	357
XapI	RAATTY	4 cut(s)	29, 382, 617, 665
XhoI	CTCGAG	1 cut(s)	169
XmnI	GAANNNNTTC	2 cut(s)	117, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.