Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001584

Physical Location & Seq

Genomic Coordinates Forward (+)

5943730 .. 5945558

Gene Structure 1829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g06100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGATCCAACATATTGAACATGTTTTCTTTAAGGGCTCAAACCCGATTTCCCAACCTTTGTTCCCATCCCAGCATCTGACGAATAGAGTCGTGAAGCTTGAAAAGGGCAAGAACTACTTCTACCCTGTGGAAGGCCTTAATCCGAGTGATGAGAATTCTGCCCTTGTCCACTATATCCAGGTTCATCGGGATGATTTTATGCTGAATGTGAAACTTCAGCTGTTTGCTCTTATTGCAAAGCAGCCTGCCTTCCACCAGCTTAGATCCGTTGAGCAACTCGGTTACATCACGGCCCTCGTGCAGAGGAATGATTTTGGTATTCGTGGGGTGCAGTTTATTATACAATCTACAGTGAAGGATCCAGCACATATTGATTTGAGAGTGGAGGAATTCCTCAAGGGGTTCGAGACTAAACTTTATGAGATGCCAAGTGACGAATTCACGAGCAATGTACATGCTTTGATCGACATGAAGCTTGAGAAGCACAAGAACTTAAGGGAAGAAGCTGGATTTTATTGGACGGAGATTTCTGATGGAACCCTCAAGTTTGATAGGAAAGAGTCTGAGATTGCAGCACTGAGGCAGCTTACGCAGCAAGAATTGAGAGACTTTTTCAATGAGCATATAAAAGTTGGGGCACCTCAAAAGAGGTCATTAAGTGTACGAGTGTATGGGAACTCACATTCATCCGGGTACACTACGGATAAAAGTTCACCAGTGAAACCTTGCTCTGTCAAAATCGACGATATATTCAGCTTCAGAAGGTCACAGCCTCTTTATGGTTCATTCAAGGGAAACCATGTGAAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

271

Amino Acids

31.17

Weight (kDa)

8.77

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41790 AT3G57470 AT3G57470 AT3G57470 AT3G57470 AT3G57470 AT3G57470
fragaria_vesca	FvH4_6g23690 FvH4_6g23690 FvH4_6g23690 FvH4_6g23690 FvH4_6g23690
malus_domestica	MD09G1162300.v1.1 MD12G1073300.v1.1 MD14G1071400.v1.1
prunus_persica	Prupe.7G061600_v2.0.a1
pyrus_communis	pycom12g06310 pycom12g06320 pycom14g06090 pycom14g06100 pycom14g06120
rosa_chinensis	RchiOBHm_Chr3g0481841 RchiOBHm_Chr3g0482151 RchiOBHm_Chr3g0482171
rosa_laevigata	RLG00000023367 RLG00000023371
rosa_multiflora	Rmu_sc0000192.1_g000006 Rmu_sc0000192.1_g000021 Rmu_sc0001738.1_g000037 Rmu_sc0001738.1_g000040 Rmu_sc0007237.1_g000003
rosa_roxburghii	Rroxscaffold_6G00399680 Rroxscaffold_6G00400000 Rroxscaffold_6G00400030
rosa_rugosa	Rorug03G0195200 Rorug03G0195300 Rorug03G0195400 Rorug03G0195500
rosa_samantha	Rh3AG245000 Rh3AG246300 Rh3AG246900 Rh3BG281400 Rh3BG281500 Rh3CG277400 Rh3CG277500 Rh3DG273700 Rh3DG274100
rosa_wichuraiana	Rw3G021870 Rw3G022020 Rw3G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	637
AclWI	GGATC	3 cut(s)	258, 353, 366
AcsI	RAATTY	3 cut(s)	154, 389, 437
AcuI	CTGAAG	2 cut(s)	200, 742
AfaI	GTAC	3 cut(s)	453, 663, 695
AfiI	CCNNNNNNNGG	2 cut(s)	131, 779
AflII	CTTAAG	1 cut(s)	493
AflIII	ACRYGT	1 cut(s)	19
AgsI	TTSAA	4 cut(s)	17, 101, 616, 790
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	7 cut(s)	97, 220, 259, 475, 506, 586, 756
AluI	AGCT	7 cut(s)	97, 220, 259, 475, 506, 586, 756
Alw26I	GTCTC	2 cut(s)	401, 600
AlwI	GGATC	3 cut(s)	258, 353, 366
AlwNI	CAGNNNCTG	1 cut(s)	76
AoxI	GGCC	2 cut(s)	133, 291
ApeKI	GCWGC	4 cut(s)	241, 572, 583, 592
ApoI	RAATTY	3 cut(s)	154, 389, 437
Asp700I	GAANNNNTTC	1 cut(s)	116
AspS9I	GGNCC	1 cut(s)	292
AsuC2I	CCSGG	1 cut(s)	691
AsuHPI	GGTGA	1 cut(s)	705
BaeGI	GKGCMC	1 cut(s)	640
BamHI	GGATCC	1 cut(s)	358
BanI	GGYRCC	1 cut(s)	637
BanII	GRGCYC	1 cut(s)	38
BauI	CACGAG	2 cut(s)	296, 442
BbvI	GCAGC	4 cut(s)	253, 584, 595, 604
BccI	CCATC	2 cut(s)	73, 527
BceAI	ACGGC	1 cut(s)	306
BciT130I	CCWGG	1 cut(s)	179
BcnI	CCSGG	1 cut(s)	691
BcoDI	GTCTC	2 cut(s)	401, 600
BfmI	CTRYAG	1 cut(s)	348
BfrI	CTTAAG	1 cut(s)	493
BisI	GCNGC	4 cut(s)	242, 573, 584, 593
BlsI	GCNGC	4 cut(s)	243, 574, 585, 594
Bme1390I	CCNGG	2 cut(s)	179, 691
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	3 cut(s)	360, 538, 639
BmrFI	CCNGG	2 cut(s)	179, 691
BmsI	GCATC	2 cut(s)	82, 414
BpuEI	CTTGAG	3 cut(s)	380, 497, 527
BpuMI	CCSGG	1 cut(s)	691
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 779
Bse1I	ACTGG	1 cut(s)	716
Bse3DI	GCAATG	1 cut(s)	454
BseBI	CCWGG	1 cut(s)	179
BseGI	GGATG	3 cut(s)	65, 196, 686
BseLI	CCNNNNNNNGG	2 cut(s)	131, 779
BseMI	GCAATG	1 cut(s)	454
BseMII	CTCAG	2 cut(s)	555, 569
BseNI	ACTGG	1 cut(s)	716
BseSI	GKGCMC	1 cut(s)	640
BseXI	GCAGC	4 cut(s)	253, 584, 595, 604
BseYI	CCCAGC	1 cut(s)	69
BsgI	GTGCAG	2 cut(s)	320, 350
BshFI	GGCC	2 cut(s)	135, 293
BshNI	GGYRCC	1 cut(s)	637
BsiSI	CCGG	1 cut(s)	690
BslI	CCNNNNNNNGG	2 cut(s)	131, 779
BsmAI	GTCTC	2 cut(s)	401, 600
BsnI	GGCC	2 cut(s)	135, 293
Bsp1286I	GDGCHC	2 cut(s)	38, 640
Bsp1407I	TGTACA	1 cut(s)	451
Bsp143I	GATC	4 cut(s)	3, 263, 358, 462
BspANI	GGCC	2 cut(s)	135, 293
BspCNI	CTCAG	2 cut(s)	556, 570
BspLI	GGNNCC	3 cut(s)	360, 538, 639
BspPI	GGATC	3 cut(s)	258, 353, 366
BspT107I	GGYRCC	1 cut(s)	637
BspTI	CTTAAG	1 cut(s)	493
BsrDI	GCAATG	1 cut(s)	454
BsrGI	TGTACA	1 cut(s)	451
BsrI	ACTGG	1 cut(s)	716
BssMI	GATC	4 cut(s)	3, 263, 358, 462
BssSI	CACGAG	2 cut(s)	296, 442
Bst2BI	CACGAG	2 cut(s)	296, 442
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	1 cut(s)	352
BstAFI	CTTAAG	1 cut(s)	493
BstAUI	TGTACA	1 cut(s)	451
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	3 cut(s)	260, 564, 578
BstENI	CCTNNNNNAGG	1 cut(s)	129
BstF5I	GGATG	3 cut(s)	65, 196, 686
BstKTI	GATC	4 cut(s)	6, 266, 361, 465
BstMAI	GTCTC	2 cut(s)	401, 600
BstMBI	GATC	4 cut(s)	3, 263, 358, 462
BstMWI	GCNNNNNNNGC	4 cut(s)	233, 481, 589, 592
BstNI	CCWGG	1 cut(s)	179
BstNSI	RCATGY	2 cut(s)	23, 458
BstSCI	CCNGG	2 cut(s)	177, 689
BstSFI	CTRYAG	1 cut(s)	348
BstSLI	GKGCMC	1 cut(s)	640
BstV1I	GCAGC	4 cut(s)	253, 584, 595, 604
BstX2I	RGATCY	2 cut(s)	263, 358
BstYI	RGATCY	2 cut(s)	263, 358
BsuRI	GGCC	2 cut(s)	135, 293
BtsCI	GGATG	3 cut(s)	65, 196, 686
BtsIMutI	CAGTG	3 cut(s)	357, 575, 723
Cac8I	GCNNGC	1 cut(s)	246
CaiI	CAGNNNCTG	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	292
Csp6I	GTAC	3 cut(s)	452, 662, 694
CviAII	CATG	4 cut(s)	20, 455, 469, 800
CviQI	GTAC	3 cut(s)	452, 662, 694
DdeI	CTNAG	3 cut(s)	260, 564, 578
DpnI	GATC	4 cut(s)	5, 265, 360, 464
DpnII	GATC	4 cut(s)	3, 263, 358, 462
Eco147I	AGGCCT	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	38
Eco57I	CTGAAG	2 cut(s)	200, 742
EcoNI	CCTNNNNNAGG	1 cut(s)	129
EcoRI	GAATTC	3 cut(s)	154, 389, 437
EcoRII	CCWGG	1 cut(s)	177
EcoT38I	GRGCYC	1 cut(s)	38
FaeI	CATG	4 cut(s)	23, 458, 472, 803
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FatI	CATG	4 cut(s)	19, 454, 468, 799
Fnu4HI	GCNGC	4 cut(s)	242, 573, 584, 593
FokI	GGATG	3 cut(s)	52, 203, 673
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	4 cut(s)	242, 573, 584, 593
GluI	GCNGC	4 cut(s)	242, 573, 584, 593
GsaI	CCCAGC	1 cut(s)	73
HaeIII	GGCC	2 cut(s)	135, 293
HapII	CCGG	1 cut(s)	690
Hin1II	CATG	4 cut(s)	23, 458, 472, 803
HindIII	AAGCTT	2 cut(s)	95, 473
HinfI	GANTC	2 cut(s)	87, 560
HpaII	CCGG	1 cut(s)	690
HphI	GGTGA	1 cut(s)	705
Hpy166II	GTNNAC	4 cut(s)	169, 662, 696, 713
Hpy188I	TCNGA	5 cut(s)	78, 144, 532, 565, 761
Hpy188III	TCNNGA	4 cut(s)	91, 188, 406, 442
Hpy8I	GTNNAC	4 cut(s)	169, 662, 696, 713
Hpy99I	CGWCG	1 cut(s)	746
HpyAV	CCTTC	4 cut(s)	125, 259, 349, 756
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4V	TGCA	4 cut(s)	236, 301, 331, 572
HpyF10VI	GCNNNNNNNGC	4 cut(s)	233, 481, 589, 592
HpyF3I	CTNAG	3 cut(s)	260, 564, 578
Hsp92II	CATG	4 cut(s)	23, 458, 472, 803
Kzo9I	GATC	4 cut(s)	3, 263, 358, 462
Lsp1109I	GCAGC	4 cut(s)	253, 584, 595, 604
LweI	GCATC	2 cut(s)	82, 414
MaeIII	GTNAC	3 cut(s)	281, 431, 765
MalI	GATC	4 cut(s)	5, 265, 360, 464
MboI	GATC	4 cut(s)	3, 263, 358, 462
MboII	GAAGA	1 cut(s)	512
MflI	RGATCY	2 cut(s)	263, 358
MhlI	GDGCHC	2 cut(s)	38, 640
MluCI	AATT	5 cut(s)	154, 389, 437, 599, 806
MlyI	GAGTC	2 cut(s)	96, 569
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	9 cut(s)	297, 305, 379, 404, 551, 573, 642, 651, 783
MroXI	GAANNNNTTC	1 cut(s)	116
MseI	TTAA	4 cut(s)	30, 138, 494, 656
MslI	CAYNNNNRTG	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	220
MspCI	CTTAAG	1 cut(s)	493
MspI	CCGG	1 cut(s)	690
MspR9I	CCNGG	2 cut(s)	179, 691
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	4 cut(s)	233, 481, 589, 592
NciI	CCSGG	1 cut(s)	691
NdeII	GATC	4 cut(s)	3, 263, 358, 462
NlaIII	CATG	4 cut(s)	23, 458, 472, 803
NlaIV	GGNNCC	3 cut(s)	360, 538, 639
NmuCI	GTSAC	2 cut(s)	431, 765
NspI	RCATGY	2 cut(s)	23, 458
PceI	AGGCCT	1 cut(s)	135
PciI	ACATGT	1 cut(s)	19
PdmI	GAANNNNTTC	1 cut(s)	116
PkrI	GCNGC	4 cut(s)	243, 574, 585, 594
PleI	GAGTC	2 cut(s)	95, 568
PpsI	GAGTC	2 cut(s)	95, 568
PscI	ACATGT	1 cut(s)	19
Psp6I	CCWGG	1 cut(s)	177
PspFI	CCCAGC	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	3 cut(s)	360, 538, 639
PspPI	GGNCC	1 cut(s)	292
PsrI	GAACNNNNNNTAC	2 cut(s)	104, 136
PstNI	CAGNNNCTG	1 cut(s)	76
PsuI	RGATCY	2 cut(s)	263, 358
PvuII	CAGCTG	1 cut(s)	220
RsaI	GTAC	3 cut(s)	453, 663, 695
RsaNI	GTAC	3 cut(s)	452, 662, 694
RseI	CAYNNNNRTG	1 cut(s)	189
SaqAI	TTAA	4 cut(s)	30, 138, 494, 656
SatI	GCNGC	4 cut(s)	242, 573, 584, 593
Sau3AI	GATC	4 cut(s)	3, 263, 358, 462
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	2 cut(s)	96, 569
ScrFI	CCNGG	2 cut(s)	179, 691
SduI	GDGCHC	2 cut(s)	38, 640
SfaNI	GCATC	2 cut(s)	82, 414
SfcI	CTRYAG	1 cut(s)	348
SmiMI	CAYNNNNRTG	1 cut(s)	189
SmlI	CTYRAG	4 cut(s)	395, 476, 493, 542
SmoI	CTYRAG	4 cut(s)	395, 476, 493, 542
Sse9I	AATT	5 cut(s)	154, 389, 437, 599, 806
SseBI	AGGCCT	1 cut(s)	135
StuI	AGGCCT	1 cut(s)	135
StyD4I	CCNGG	2 cut(s)	177, 689
TaaI	ACNGT	1 cut(s)	352
TaqI	TCGA	3 cut(s)	405, 465, 741
TasI	AATT	5 cut(s)	154, 389, 437, 599, 806
TatI	WGTACW	1 cut(s)	451
Tru1I	TTAA	4 cut(s)	30, 138, 494, 656
Tru9I	TTAA	4 cut(s)	30, 138, 494, 656
TscAI	CASTG	3 cut(s)	357, 582, 723
TseFI	GTSAC	2 cut(s)	431, 765
TseI	GCWGC	4 cut(s)	241, 572, 583, 592
Tsp45I	GTSAC	2 cut(s)	431, 765
TspDTI	ATGAA	4 cut(s)	173, 485, 675, 774
TspGWI	ACGGA	3 cut(s)	256, 536, 716
TspRI	CASTG	3 cut(s)	357, 582, 723
Vha464I	CTTAAG	1 cut(s)	493
XagI	CCTNNNNNAGG	1 cut(s)	129
XapI	RAATTY	3 cut(s)	154, 389, 437
XceI	RCATGY	2 cut(s)	23, 458
XmnI	GAANNNNTTC	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.