Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001738.1

Orthogroup ID

OG0001584

Physical Location & Seq

Genomic Coordinates Forward (+)

185270 .. 189943

Gene Structure 4674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001738.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

atgtcctatttctacagaatcttctgggagtccaagaaatttgaaggtgatacaaacatgtttgagccctggtatggaactgcttactgcatggagaaaattacgggctccagaattcaggaatggatagcatcttccccaaatgagaatttacacctaccagcacgtaatgttttcatccccacggacttgtctcttaagaatgagaatgagaaggtcaaatgtccagttctgttaagaaagtcaccatatgcaacactatggtacaagcctgatacaatgttttttactcctaaagcatacgtcaagattgatttcaattgtccccatgcaagtggctcccctgaagcagaagtcctgactaatatttttactcacttgttaatggattacttgaatgactatgcttattatgctaaggttgctggactgtactatggaataaaccacacagaaagtggttttcaggtgactctggttggttataatcacaaattgaggattttactggaaacggtagttgagaagatggcaagctttaaagtgaaagctgacaggttctctgtgatcaaggaaatggtcacaaagaagtaccaaaattacaaatttcaacagccctatgagcaggctatgtactatttctcattaattctacagtaccagacatggccattgatggaacaactagaagttcttcctcatcttgaagttgaagatcttgctaagtttgttccattgatgctctcaagggccttcttagagtgttacacagcagagagattttgtttttcaggaaaccttgaaagtactgaagctgagtcaatgatcctgcacgtagaagatgttttttttaagggttcaaaccctatttgccaacctttattcccatcccaacatttgacaaatagagtcgtgaagcttgaaaagggaaaaaactttatctatcctgtggaaggccttaatccaagtgatgagaattcttcccttgtccactatatccagagcaatgtaaatactttgatcgatatgaagcttgagaagcacaagaacttgagggaagaagctggattttattggagggagatttctgatgggaccctcaagtttgatcgtaaagaagcagagattgcagcactgaggcagcttacacaacaagagttgattgagttttataatgagcatataaaagttggggcacctcgtaagaggacattgagtgtacgagtatatgggaatcctcattcatctgagtatgcatcagataaaagctccccagtgcaaccttgcactgtcaaaatcgatgatatattcactttcagaaggtcacagcctctttatggttcattcaagggaaactttggtcatgtgaagttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

458

Amino Acids

53.4

Weight (kDa)

6.9

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41790 AT3G57470 AT3G57470 AT3G57470 AT3G57470 AT3G57470 AT3G57470
fragaria_vesca	FvH4_6g23690 FvH4_6g23690 FvH4_6g23690 FvH4_6g23690 FvH4_6g23690
malus_domestica	MD09G1162300.v1.1 MD12G1073300.v1.1 MD14G1071400.v1.1
prunus_persica	Prupe.7G061600_v2.0.a1
pyrus_communis	pycom12g06310 pycom12g06320 pycom14g06090 pycom14g06100 pycom14g06120
rosa_chinensis	RchiOBHm_Chr3g0481841 RchiOBHm_Chr3g0482151 RchiOBHm_Chr3g0482171
rosa_laevigata	RLG00000023367 RLG00000023371
rosa_multiflora	Rmu_sc0000192.1_g000006 Rmu_sc0000192.1_g000021 Rmu_sc0001738.1_g000037 Rmu_sc0001738.1_g000040 Rmu_sc0007237.1_g000003
rosa_roxburghii	Rroxscaffold_6G00399680 Rroxscaffold_6G00400000 Rroxscaffold_6G00400030
rosa_rugosa	Rorug03G0195200 Rorug03G0195300 Rorug03G0195400 Rorug03G0195500
rosa_samantha	Rh3AG245000 Rh3AG246300 Rh3AG246900 Rh3BG281400 Rh3BG281500 Rh3CG277400 Rh3CG277500 Rh3DG273700 Rh3DG274100
rosa_wichuraiana	Rw3G021870 Rw3G022020 Rw3G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	486, 1173
AccB1I	GGYRCC	1 cut(s)	1195
AclWI	GGATC	1 cut(s)	820
AcoI	YGGCCR	1 cut(s)	668
AcsI	RAATTY	5 cut(s)	38, 114, 148, 605, 976
AcuI	CTGAAG	2 cut(s)	366, 831
AfaI	GTAC	7 cut(s)	266, 434, 593, 635, 659, 808, 1221
AfiI	CCNNNNNNNGG	3 cut(s)	74, 953, 1337
AflII	CTTAAG	1 cut(s)	197
AflIII	ACRYGT	1 cut(s)	57
AjnI	CCWGG	1 cut(s)	68
AluBI	AGCT	8 cut(s)	537, 551, 815, 919, 1033, 1064, 1144, 1269
AluI	AGCT	8 cut(s)	537, 551, 815, 919, 1033, 1064, 1144, 1269
Alw26I	GTCTC	1 cut(s)	198
AlwI	GGATC	1 cut(s)	820
AoxI	GGCC	3 cut(s)	668, 750, 955
ApeKI	GCWGC	2 cut(s)	1130, 1141
ApoI	RAATTY	5 cut(s)	38, 114, 148, 605, 976
AseI	ATTAAT	1 cut(s)	647
Asp700I	GAANNNNTTC	1 cut(s)	693
AspS9I	GGNCC	2 cut(s)	750, 1095
AsuHPI	GGTGA	3 cut(s)	59, 237, 481
AvaII	GGWCC	1 cut(s)	1095
BaeGI	GKGCMC	1 cut(s)	1198
BalI	TGGCCA	1 cut(s)	670
BanI	GGYRCC	1 cut(s)	1195
BanII	GRGCYC	2 cut(s)	69, 110
BbvI	GCAGC	2 cut(s)	1142, 1153
BccI	CCATC	4 cut(s)	523, 670, 895, 1085
BciT130I	CCWGG	1 cut(s)	70
BclI	TGATCA	1 cut(s)	567
BcoDI	GTCTC	1 cut(s)	198
BfaI	CTAG	1 cut(s)	686
BfmI	CTRYAG	2 cut(s)	13, 653
BfrI	CTTAAG	1 cut(s)	197
BglII	AGATCT	1 cut(s)	715
BisI	GCNGC	2 cut(s)	1131, 1142
BlsI	GCNGC	2 cut(s)	1132, 1143
BmcAI	AGTACT	1 cut(s)	808
Bme1390I	CCNGG	1 cut(s)	70
Bme18I	GGWCC	1 cut(s)	1095
BmgT120I	GGNCC	2 cut(s)	750, 1095
BmiI	GGNNCC	5 cut(s)	109, 340, 1096, 1097, 1197
BmrFI	CCNGG	1 cut(s)	70
BmrI	ACTGGG	1 cut(s)	1268
BmsI	GCATC	3 cut(s)	140, 729, 1265
BmuI	ACTGGG	1 cut(s)	1268
BpmI	CTGGAG	1 cut(s)	94
Bpu10I	CCTNAGC	1 cut(s)	417
BpuEI	CTTGAG	4 cut(s)	730, 1055, 1072, 1085
Bsa29I	ATCGAT	2 cut(s)	1023, 1299
BsaAI	YACGTR	2 cut(s)	167, 835
BsaJI	CCNNGG	2 cut(s)	68, 183
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 953, 1337
Bse1I	ACTGG	3 cut(s)	227, 513, 1274
Bse3DI	GCAATG	1 cut(s)	1012
BseBI	CCWGG	1 cut(s)	70
BseCI	ATCGAT	2 cut(s)	1023, 1299
BseDI	CCNNGG	2 cut(s)	68, 183
BseGI	GGATG	2 cut(s)	177, 887
BseLI	CCNNNNNNNGG	3 cut(s)	74, 953, 1337
BseMI	GCAATG	1 cut(s)	1012
BseMII	CTCAG	3 cut(s)	807, 1127, 1239
BseNI	ACTGG	3 cut(s)	227, 513, 1274
BseSI	GKGCMC	1 cut(s)	1198
BseXI	GCAGC	2 cut(s)	1142, 1153
BsgI	GTGCAG	1 cut(s)	815
BshFI	GGCC	3 cut(s)	670, 752, 957
BshNI	GGYRCC	1 cut(s)	1195
BshVI	ATCGAT	2 cut(s)	1023, 1299
BslFI	GGGAC	2 cut(s)	309, 1108
BslI	CCNNNNNNNGG	3 cut(s)	74, 953, 1337
BsmAI	GTCTC	1 cut(s)	198
BsmFI	GGGAC	2 cut(s)	309, 1108
BsnI	GGCC	3 cut(s)	670, 752, 957
Bsp1286I	GDGCHC	3 cut(s)	69, 110, 1198
Bsp143I	GATC	5 cut(s)	567, 715, 825, 1020, 1108
BspANI	GGCC	3 cut(s)	670, 752, 957
BspCNI	CTCAG	3 cut(s)	808, 1128, 1240
BspDI	ATCGAT	2 cut(s)	1023, 1299
BspLI	GGNNCC	5 cut(s)	109, 340, 1096, 1097, 1197
BspPI	GGATC	1 cut(s)	820
BspT107I	GGYRCC	1 cut(s)	1195
BspTI	CTTAAG	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	1012
BsrI	ACTGG	3 cut(s)	227, 513, 1274
BssECI	CCNNGG	2 cut(s)	68, 183
BssMI	GATC	5 cut(s)	567, 715, 825, 1020, 1108
Bst2UI	CCWGG	1 cut(s)	70
Bst4CI	ACNGT	4 cut(s)	432, 517, 657, 1291
BstAFI	CTTAAG	1 cut(s)	197
BstAPI	GCANNNNNTGC	1 cut(s)	1127
BstBAI	YACGTR	2 cut(s)	167, 835
BstC8I	GCNNGC	2 cut(s)	535, 627
BstDEI	CTNAG	6 cut(s)	417, 723, 757, 816, 1136, 1248
BstDSI	CCRYGG	1 cut(s)	183
BstENI	CCTNNNNNAGG	1 cut(s)	951
BstF5I	GGATG	2 cut(s)	177, 887
BstKTI	GATC	5 cut(s)	570, 718, 828, 1023, 1111
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	5 cut(s)	567, 715, 825, 1020, 1108
BstMWI	GCNNNNNNNGC	5 cut(s)	413, 422, 622, 1039, 1127
BstNI	CCWGG	1 cut(s)	70
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	1 cut(s)	68
BstSFI	CTRYAG	2 cut(s)	13, 653
BstSLI	GKGCMC	1 cut(s)	1198
BstV1I	GCAGC	2 cut(s)	1142, 1153
BstX2I	RGATCY	1 cut(s)	715
BstXI	CCANNNNNNTGG	1 cut(s)	335
BstYI	RGATCY	1 cut(s)	715
Bsu15I	ATCGAT	2 cut(s)	1023, 1299
BsuRI	GGCC	3 cut(s)	670, 752, 957
BsuTUI	ATCGAT	2 cut(s)	1023, 1299
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	2 cut(s)	177, 887
BtsIMutI	CAGTG	3 cut(s)	1133, 1281, 1287
Cac8I	GCNNGC	2 cut(s)	535, 627
Cfr13I	GGNCC	2 cut(s)	750, 1095
ClaI	ATCGAT	2 cut(s)	1023, 1299
Csp6I	GTAC	7 cut(s)	265, 433, 592, 634, 658, 807, 1220
CviAII	CATG	5 cut(s)	58, 91, 329, 666, 1364
CviQI	GTAC	7 cut(s)	265, 433, 592, 634, 658, 807, 1220
DdeI	CTNAG	6 cut(s)	417, 723, 757, 816, 1136, 1248
DpnI	GATC	5 cut(s)	569, 717, 827, 1022, 1110
DpnII	GATC	5 cut(s)	567, 715, 825, 1020, 1108
DraI	TTTAAA	1 cut(s)	541
EaeI	YGGCCR	1 cut(s)	668
Eco147I	AGGCCT	1 cut(s)	957
Eco24I	GRGCYC	2 cut(s)	69, 110
Eco47I	GGWCC	1 cut(s)	1095
Eco57I	CTGAAG	2 cut(s)	366, 831
EcoNI	CCTNNNNNAGG	1 cut(s)	951
EcoO109I	RGGNCCY	2 cut(s)	750, 1095
EcoRI	GAATTC	2 cut(s)	114, 976
EcoRII	CCWGG	1 cut(s)	68
EcoT22I	ATGCAT	1 cut(s)	1258
EcoT38I	GRGCYC	2 cut(s)	69, 110
FaeI	CATG	5 cut(s)	61, 94, 332, 669, 1367
FalI	AAGNNNNNCTT	2 cut(s)	1340, 1372
FaqI	GGGAC	2 cut(s)	309, 1108
FatI	CATG	5 cut(s)	57, 90, 328, 665, 1363
FauNDI	CATATG	1 cut(s)	250
FbaI	TGATCA	1 cut(s)	567
Fnu4HI	GCNGC	2 cut(s)	1131, 1142
FokI	GGATG	2 cut(s)	164, 874
FriOI	GRGCYC	2 cut(s)	69, 110
Fsp4HI	GCNGC	2 cut(s)	1131, 1142
FspBI	CTAG	1 cut(s)	686
GluI	GCNGC	2 cut(s)	1131, 1142
GsuI	CTGGAG	1 cut(s)	94
HaeIII	GGCC	3 cut(s)	670, 752, 957
Hin1II	CATG	5 cut(s)	61, 94, 332, 669, 1367
HindIII	AAGCTT	3 cut(s)	535, 917, 1031
HinfI	GANTC	6 cut(s)	18, 29, 472, 818, 909, 1234
HphI	GGTGA	3 cut(s)	59, 237, 481
Hpy166II	GTNNAC	2 cut(s)	991, 1220
Hpy188I	TCNGA	4 cut(s)	1090, 1249, 1261, 1319
Hpy188III	TCNNGA	8 cut(s)	111, 119, 307, 358, 704, 792, 913, 1000
Hpy8I	GTNNAC	2 cut(s)	991, 1220
HpyAV	CCTTC	5 cut(s)	38, 208, 763, 947, 1314
HpyCH4III	ACNGT	4 cut(s)	432, 517, 657, 1291
HpyCH4IV	ACGT	3 cut(s)	166, 303, 834
HpyCH4V	TGCA	8 cut(s)	90, 254, 332, 832, 1130, 1256, 1279, 1287
HpyF10VI	GCNNNNNNNGC	5 cut(s)	413, 422, 622, 1039, 1127
HpyF3I	CTNAG	6 cut(s)	417, 723, 757, 816, 1136, 1248
HpySE526I	ACGT	3 cut(s)	166, 303, 834
Hsp92II	CATG	5 cut(s)	61, 94, 332, 669, 1367
KflI	GGGWCCC	1 cut(s)	1095
Ksp22I	TGATCA	1 cut(s)	567
Kzo9I	GATC	5 cut(s)	567, 715, 825, 1020, 1108
LmnI	GCTCC	3 cut(s)	113, 344, 1274
Lsp1109I	GCAGC	2 cut(s)	1142, 1153
LweI	GCATC	3 cut(s)	140, 729, 1265
MaeI	CTAG	1 cut(s)	686
MaeII	ACGT	3 cut(s)	166, 303, 834
MaeIII	GTNAC	5 cut(s)	243, 469, 580, 764, 1323
MalI	GATC	5 cut(s)	569, 717, 827, 1022, 1110
MboI	GATC	5 cut(s)	567, 715, 825, 1020, 1108
MboII	GAAGA	8 cut(s)	13, 126, 538, 686, 725, 851, 972, 1070
MfeI	CAATTG	1 cut(s)	319
MflI	RGATCY	1 cut(s)	715
MhlI	GDGCHC	3 cut(s)	69, 110, 1198
MlsI	TGGCCA	1 cut(s)	670
MluNI	TGGCCA	1 cut(s)	670
MlyI	GAGTC	4 cut(s)	38, 466, 827, 918
Mox20I	TGGCCA	1 cut(s)	670
Mph1103I	ATGCAT	1 cut(s)	1258
MroXI	GAANNNNTTC	1 cut(s)	693
MscI	TGGCCA	1 cut(s)	670
MseI	TTAA	7 cut(s)	198, 236, 383, 540, 647, 852, 960
MslI	CAYNNNNRTG	1 cut(s)	333
Msp20I	TGGCCA	1 cut(s)	670
MspCI	CTTAAG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	70
MunI	CAATTG	1 cut(s)	319
MvaI	CCWGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	5 cut(s)	413, 422, 622, 1039, 1127
NdeI	CATATG	1 cut(s)	250
NdeII	GATC	5 cut(s)	567, 715, 825, 1020, 1108
NlaIII	CATG	5 cut(s)	61, 94, 332, 669, 1367
NlaIV	GGNNCC	5 cut(s)	109, 340, 1096, 1097, 1197
NmuCI	GTSAC	4 cut(s)	243, 469, 580, 1323
NsiI	ATGCAT	1 cut(s)	1258
NspI	RCATGY	1 cut(s)	61
PceI	AGGCCT	1 cut(s)	957
PciI	ACATGT	1 cut(s)	57
PdmI	GAANNNNTTC	1 cut(s)	693
PfeI	GAWTC	2 cut(s)	18, 1234
PkrI	GCNGC	2 cut(s)	1132, 1143
PleI	GAGTC	4 cut(s)	37, 466, 826, 917
PpsI	GAGTC	4 cut(s)	37, 466, 826, 917
Ppu21I	YACGTR	2 cut(s)	167, 835
PpuMI	RGGWCCY	1 cut(s)	1095
PscI	ACATGT	1 cut(s)	57
PshBI	ATTAAT	1 cut(s)	647
PsiI	TTATAA	2 cut(s)	486, 1173
Psp5II	RGGWCCY	1 cut(s)	1095
Psp6I	CCWGG	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	5 cut(s)	109, 340, 1096, 1097, 1197
PspPI	GGNCC	2 cut(s)	750, 1095
PspPPI	RGGWCCY	1 cut(s)	1095
PsuI	RGATCY	1 cut(s)	715
RsaI	GTAC	7 cut(s)	266, 434, 593, 635, 659, 808, 1221
RsaNI	GTAC	7 cut(s)	265, 433, 592, 634, 658, 807, 1220
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	7 cut(s)	198, 236, 383, 540, 647, 852, 960
SatI	GCNGC	2 cut(s)	1131, 1142
Sau3AI	GATC	5 cut(s)	567, 715, 825, 1020, 1108
Sau96I	GGNCC	2 cut(s)	750, 1095
ScaI	AGTACT	1 cut(s)	808
SchI	GAGTC	4 cut(s)	38, 466, 827, 918
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	3 cut(s)	69, 110, 1198
SfaNI	GCATC	3 cut(s)	140, 729, 1265
SfcI	CTRYAG	2 cut(s)	13, 653
SinI	GGWCC	1 cut(s)	1095
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	5 cut(s)	197, 745, 1034, 1051, 1100
SmoI	CTYRAG	5 cut(s)	197, 745, 1034, 1051, 1100
SseBI	AGGCCT	1 cut(s)	957
SspI	AATATT	1 cut(s)	367
SspMI	CTAG	1 cut(s)	686
StuI	AGGCCT	1 cut(s)	957
StyD4I	CCNGG	1 cut(s)	68
TaaI	ACNGT	4 cut(s)	432, 517, 657, 1291
TaiI	ACGT	3 cut(s)	169, 306, 837
TaqI	TCGA	2 cut(s)	1023, 1299
TatI	WGTACW	3 cut(s)	432, 633, 806
TfiI	GAWTC	2 cut(s)	18, 1234
Tru1I	TTAA	7 cut(s)	198, 236, 383, 540, 647, 852, 960
Tru9I	TTAA	7 cut(s)	198, 236, 383, 540, 647, 852, 960
TscAI	CASTG	3 cut(s)	1140, 1281, 1294
TseFI	GTSAC	4 cut(s)	243, 469, 580, 1323
TseI	GCWGC	2 cut(s)	1130, 1141
Tsp45I	GTSAC	4 cut(s)	243, 469, 580, 1323
TspDTI	ATGAA	4 cut(s)	166, 1043, 1233, 1332
TspGWI	ACGGA	1 cut(s)	200
TspRI	CASTG	3 cut(s)	1140, 1281, 1294
Vha464I	CTTAAG	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	1095
VspI	ATTAAT	1 cut(s)	647
XagI	CCTNNNNNAGG	1 cut(s)	951
XapI	RAATTY	5 cut(s)	38, 114, 148, 605, 976
XceI	RCATGY	1 cut(s)	61
XcmI	CCANNNNNNNNNTGG	1 cut(s)	455
XmnI	GAANNNNTTC	1 cut(s)	693
XspI	CTAG	1 cut(s)	686
ZrmI	AGTACT	1 cut(s)	808
Zsp2I	ATGCAT	1 cut(s)	1258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.